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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009228 ID=TCONS_00009228|Name=TCONS_00009228|organism=Clytia hemisphaerica|type=transcript|length=3701bpRun BLAST on NCBI protein sequence of TCONS_00009228-protein >TCONS_00009228-protein ID=TCONS_00009228-protein|Name=TCONS_00009228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp MEVFSLMLTLLLVSCLQFAFVESEQPPNVVFILADDLGWNDVGFHGSDQIRun BLAST on NCBI transcript from alignment at sc0000091:44547..62633- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009228 ID=TCONS_00009228|Name=TCONS_00009228|organism=Clytia hemisphaerica|type=transcript|length=18087bp|location=Sequence derived from alignment at sc0000091:44547..62633- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:44547..62633- >TCONS_00009228 ID=TCONS_00009228|Name=TCONS_00009228|organism=Clytia hemisphaerica|type=CDS|length=14580bp|location=Sequence derived from alignment at sc0000091:44547..62633- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009228 vs. Swiss-Prot (Human)
Match: ARSJ (Arylsulfatase J OS=Homo sapiens GN=ARSJ PE=2 SV=1) HSP 1 Score: 391.349 bits (1004), Expect = 3.939e-121 Identity = 216/510 (42.35%), Postives = 305/510 (59.80%), Query Frame = 2
Query: 2006 SEQPPNVVFILADDLGWNDVGFHGSDQIETPNIDKLAKEGIILNNYYVQPICCPTRSALMTGRYPIHTGMYHSVIRPEEPWGLSLDEKMLPQYLKEQGYTTHMVGKWHLGYFAKEYTPTYRGFDTFYGYYNGAEDYFYHNRSGYHFPQYSGVDLHHAVHEQMTHDWFQDGHYSGDLFTSKAIDIIQDHPTTDPLFLYLPFQNVHDPWDAPKEWVDKFSNKIEDEQRRTFAAMVGALDEAIGKIYEALDEKNMLDNSIIIFTSDNGGIPTDGHSSNFPLRGQKWNAYEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKITKEI--DGFDQWKTLQSDVESPRKEILLNIDDIFN------------------QEALIVGEWKILTDFVHRSTRKKDTIDHGYQDGWIKAPGHNSTGKATSPVNCGSKPEKVTHCI-ETHCLFNLQSDPCEYNDVSSQYPEIYQQMKNKLENYKKGMVQSRKKPGDKTADPRLHGGVWMPW 3472
S P+++FILADD G+ DVG+HGS+ I+TP +DKLA EG+ L NYYVQPIC P+RS +TG+Y IHTG+ HS+IRP +P L LD LPQ LKE GY+THMVGKWHLG++ KE PT RGFDTF+G G+ DY+ H + P G DL+ + +D +G YS ++T + I+ H T P+FLY+ +Q VH P AP + + + + I +RR +AAM+ LDEAI + AL +NSIII++SDNGG PT G SN+PLRG K +EGG+R F++SPLLK G +++H+TDW PT+++LA+G+I ++I DG+D W+T+ + SPR +IL NID I+ Q A+ V WK+LT + GY D W+ ++ G E++T ++ LFN+ +DP E D+S++YP I +++ +L + K V R P D ++PRL+GGVW PW
Sbjct: 72 STSQPHLIFILADDQGFRDVGYHGSE-IKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHYKC--DSPGMCGYDLYENDNAAWDYD---NGIYSTQMYTQRVQQILASHNPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIININRRR-YAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAG-GSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTG------------NPGYSD-WVPPQSFSNLGPNR------WHNERITLSTGKSVWLFNITADPYERVDLSNRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPW 554 HSP 2 Score: 361.688 bits (927), Expect = 3.313e-110 Identity = 196/502 (39.04%), Postives = 298/502 (59.36%), Query Frame = 3
Query: 105 SEQPPNVVLIVADDLGWTDVSFHGCDQIKTPNIDKLAKEGIILNNYYVQPICTPTRSALMTGRYPIHTGMQHGVLLASEPWGLSLDEKTLPQYLKEMGYATHAIGKWHLGMFAKEYTPTYRGFDTFXXXXXXXXXXXXHNVSDMHFPQYSGLDLRKDSNGQSQPVWT-QSGNYSSFVFAEEAVNVISSQSKEQPLFLYLPFQNVHFPFEAPQEWIDKFSFIEDEKRRTFAAMVALLDDAVRKIYEALEATDMVDNTLIIFTSDNGGRSSQGYASNFPLRGEKGKIFEGGVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKITKEI--DGFDQWKTLQSDVESPRKEILLNID------------------TEVGEEGLIFDQWKIIKEITTADGWMKPAGYNASGKATTVVDCGPKP---DKMT-HCNETHCLFNLQNDPCEYNDVSSQYPEIYQQMKNKLEDYKKGMVPPVNQPGDKNCDPDLFGGVWTPWIE 1535
S P+++ I+ADD G+ DV +HG +IKTP +DKLA EG+ L NYYVQPICTP+RS +TG+Y IHTG+QH ++ ++P L LD TLPQ LKE+GY+TH +GKWHLG + KE PT RGFDTF+G G+ DYY H D P G DL ++ N W +G YS+ ++ + +++S + +P+FLY+ +Q VH P +AP + + + I + RR +AAM++ LD+A+ + AL+ +N++II++SDNGG+ + G SN+PLRG KG +EGG+R F++SPLLK G +++H+TDW PT+++LA+G+I ++I DG+D W+T+ + SPR +IL NID + + WK++ W+ P ++ + GP +++T ++ LFN+ DP E D+S++YP I +++ +L + K VP P D +P L GGVW PW +
Sbjct: 72 STSQPHLIFILADDQGFRDVGYHG-SEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHYKCDS--PGMCGYDLYENDNA----AWDYDNGIYSTQMYTQRVQQILASHNPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIININRRRYAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAG-GSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTGNPGYSDWVPPQSFS---------NLGPNRWHNERITLSTGKSVWLFNITADPYERVDLSNRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPWYK 556 The following BLAST results are available for this feature:
BLAST of TCONS_00009228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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