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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009225 ID=TCONS_00009225|Name=TCONS_00009225|organism=Clytia hemisphaerica|type=transcript|length=621bp
acaatTTGTAACAGGACCGATAACCTTACATTTTGTTGTATTTATTGGTA
ACATCTAACATTGAATTTATATCTCATAGACAACTCTAAATAATACTAAC
ATTGGCTAAATGGTTAAATGACAAAATGAAGGCAATCTTATGGCAAATTT
TCTTGGTAGTTTCCCTCGTTGGTCAAACTTTGTGCGCAGAGAAACCAAAC
TTTGTTATCATCGTAGCTGACGATTTGGGCTGGAATGATGTCAGCTTCCA
TGGATCCGATCAAATCCCAACACCGAATATCGATAAATTGGCAAAAGAAG
gaattattttgaataattattaTGTTGCACCTATATGCTCACCATCTCGA
AGCGCTATCATGACTGGAAGATACCCTATTCATACAGGTATGCAGGAAAG
CACAGTGTTTGCTTCAGATACATGGGGAGTTGGtttaaatgaaacatttt
taccaGAGATTCTCAAAGAACAGGGATATTCAACGCATGCTGTCGGCAAG
TGGCATGTTGGTATGTTTGCGAAAGAATACACTCCAACATACAGAGGCTT
TGATTCGTTTTATGGCTACTACCTTGGGAAAGCTGATTATTGGGACCACT
CCAATAACGAGAAGTACTGGG Run BLAST on NCBI transcript from alignment at sc0000091:35957..43905- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009225 ID=TCONS_00009225|Name=TCONS_00009225|organism=Clytia hemisphaerica|type=transcript|length=7949bp|location=Sequence derived from alignment at sc0000091:35957..43905- (Clytia hemisphaerica)
ACAATTTGTAACAGGACCGATAACCTTACATTTTGTTGTATTTATTGGTA
ACATCTAACATTGAATTTATATCTCATAGACAACTCTAAATAATACTAAC
ATTGGCTAAATGGTTAAATGACAAAATGAAGGCAATCTTATGGCAAATTT
TCTTGGTAGTTTCCCTCGTTGGTCAAACTTTGTGCGCAGAGAAACCAAAC
TTTGTTATCATCGTAGCTGACGATTTGGTAAGTACTCTAACAAACTCATA
ACACTTTCTGAATCCTCGATATAGGATGGCAATCGATCCAGGGAGGTGGG
ATACCCAGGTATTTGCGGATCTTCAAATCTTGAAAAATCCTGTTGTATTT
TTTCTAAAAAATAAGAATATCGAGTCCCTCAAAAGGGTAATCGGTTCTCG
CAAAAATCTCACTGAGATACAACCTACCTGGACATAAATTGAACATTTGA
ATAAATTTATTTGATTGAAAAATTCAATTAGATTTATTTATTTTGGCCCT
CATTCATGTCTGCTTTTCCACCAAAGGGCTGGAATGATGTCAGCTTCCAT
GGATCCGATCAAATCCCAACACCGAATATCGATAAATTGGCAAAAGAAGG
AATTATTTTGAATAATTATTATGTTGCACCTATATGCTCACCATCTCGAA
GCGCTATCATGACTGGAAGATACCCTATTCATACAGGTTATCATTTTTTT
TGTTCTAACCAAATGACTCTGGTAGTGGAAACAACTGTTACTACAGAGAG
TTTACTGCTAAGCTTTTGGGTTTTAATGTTTACTATTCTATTTGTCATTT
CAGGTATGCAGGAAAGCACAGTGTTTGCTTCAGATACATGGGGAGTTGGT
TTAAATGAAACATTTTTACCAGAGATTCTCAAAGAACAGGGATATTCAAC
GCATGCTGTCGGCAAGGTATGTTTGTATATAATTTAATGATGTGAGATGC
TGTGCAATCTTATGAAGTGCTTGTGAGTCCCAATAAGAGCGAAATGCATA
CACCTGCTCTGAAAGAAAATAGTTGGACAGTTATATATATTAATTTCATT
CACTTTGAAACTTGTTTTTACTTTGGTTTTAGTACAAGTAGTGCTCTATG
AATTGCTTTCTCTGATTCGGTTTGCTCAAGTCAATACTTAGACCAAGGAC
ACTTGTATAGCGTATACAAGTGTCCTTGCTTAGACTCAAAGTAAGCCGAA
TTTGACCTTTCTGAAAAACGAGGACACTTCATCTCAATGAATGAAATAAA
TGTAAAATATTTTTTTATAGTGGCATGTTGGTATGTTTGCGAAAGAATAC
ACTCCAACATACAGAGGCTTTGATTCGTTTTATGGTTACTACCTTGGGAA
AGCTGATTATTGGGACCACTCCAATAATGAGAAGTACTGGGGACTCGATC
TGCATGATAATTTTGAGGTCAGTGTTCTTTATTATATACTCAACTGCTCC
CCTCTGATATTGATAACGATGTTGTGAAATTCTTGTTGACATATTTTTAC
TTGAGCATTATCATTTTTTATAATCTAGGGTGTTACCGGATTTGTGGGTT
GTCTGACTGAAAGTTTTTTGATTTCTTTCATAATTTCCAAAGACAGTCTA
TGAGGAACTGATTTCTTCGTTTCCGTGTACTTGTGACTCTTTTAAGGATG
AGCAAAGTAGAAAAGCCAGTGACCTATCTTGTATGCCTTTTTATTTGTCT
ATGTGCTCCTGAGCTCAGCCCTGGATAATTCAAATCCCTAAAAGTGATCT
CTATTTGTTCTTACCAACATCATTATCTTGTATCTTTAATAAATTTAGAT
GGTACAAACATCAGCCTTTCTTTGTTTATACTTCTAATTTTTCGTCATTT
TAGCCGGTATACACACAATGGGGTAACTACAGTACGGAGATGTACACAGC
TGAAGCAGAAGGTCGTATACACAATCATGACCAATCGAAACCACTCTTCT
TATACCTCGCATATCAAGCGGTTCACAGTGCTAATAGGGACGCAGATGCA
CTGCAAGCCCCCGATTCATGGATACGAAAGTATAATTACATTCAGCACGA
AGGACGTAGAAAATTTGCAGCTATGATGGGTTANCTAAAAGAGCACTCCT
TCCGCCCGCGCGACTTGCAAAAACCTCTCCTCATTGAGGAGAGGTTTTTT
ATACTTGATACTTGCTGTTAAAAGTCAAGGGATGATAAAGATCCTTTCTG
TCACCGTTCAAACTAATTTTTTTCCATTTAACAGCAAAATAAACATTTAA
AACCGAAGAACCACTGCTTAGATTGCTTANCAATGCTTATATTATGCTGA
ATTTTACTGCCATCTAAATTTCCTTGCTATTTAGCAACTCAACCATACTT
CCGAACAAAACAATATTTACCATAAATTTACTCATGTACCTGACCAATAT
ATAGCTTATTACAGAGTGAAACCCACTGACCTTTATATATCCATGGACCA
AGCTATATCCGCCATCTTTGATTGGTTTTTTTTTGGAATTGGTTCCCGAG
AAGAAGCCATTGCAATGTTAAAAATTAACGTCTAACGGCGCTACATCATC
AAAAGTATTCGAGAACTAGCCGTATTGTATAAGGGTNCGCAATTTGATCA
ACTTCAGATTCTAAGTCCGTGTTTCGGCTTGCGGTAACTTTATTGCTGTT
CACTGCTAGGGTACACCATTTTAAAACGGCTTCTTTCGCAGTCCTAGCTA
CCAAACCGAGAAAGTTTTCGTGGCTTCAAGCCAAACCATTCAAGGTCATT
TTGATAAAATCATCGGTTTGAAGATGTGATTTATATAGCAAATTTTATAG
CAAATTTTCGCTTGGGATAGAAGTTAAAGGTACGTGCACACAAATAGCAA
AACTTCTTCGCTCATAAATTCGCTTTGCAAAAAGTAGATCTAGTGCTCTC
GATGCACTCAAAACTACATATATGAGTAGTGCCGCCATTAGGATACCATT
TTCAAAAAAACTCCGATCNTTAGCAAAATAAGAGACACTCTAAAAATCCC
TCTAATAAAGCCGCTATGAGACAGGTTCGTAAGAGCCTTAATGCCCAAAC
ACACCACATAATCCACGGCGGCACAACACCCGCCGCCACCCGCGCATCGC
TCTTTTTTTCATTCTAGTTATTCTAGTGTAAATGGTGCCTTAATAAAATC
GAAGGATATTCGTCGAACGATGATCGAACATTTTTATCCGAATCACGAAT
CGTCTGTCGAAATCATCAAAACATAAAANTCAGTCCAAAGCTCAACCATT
TACGCAAATTTTATATCGGCCAAACCTCTTAAAACAAAATTTCATGTTTT
TTCGTTGCCACAGGTCCACGATGCTCTGGTAAAGACAGGCATGATCAATA
ACACAGTCATCATTTTCACCACAGATAACGGAGGTCCTGCTAATGGTTTT
GACGCAAACTGGGCCAATAATTTCCCTTTAAGAGGTGTCAAGGCTACGCT
ATGGGAAGGTACGGCCCGAGCGCTATTCCAACTTCGTTTCAGCATCCATT
TAACGTTTTAAGGGCGTTATAGGCGTTAGCTAGACGTTGTTTTGATATTT
TCAGACATCTTGGAGAAGGTCTTACCTGTTGCTGTATGATTCTTAAGTCG
AATTCATAAGATCAAAAGCTCTCCTTTAAGCTACTCAACCACTTTCAAAT
TACTTGCAATTTCATCTATTGAATCTTGAACGAATAAACTATTTTTTAAG
AAGTCAGAAAACCAGCGAAATTTTACGGACCTTTGACTTTTTATTATTTT
AAGGAGGTGTGCGAGCGGCTGGATTTGTTCATAGTAACTTGTTAAAGAAG
CCAGGTCGAACATCCATGGACTTAATACACATTACCGATTGGGTTCCAAC
GCTGGTCAATTTAGCAGGTGGATCTTCAAAAGCTCCCTTTGATGGTGTGG
ATCAATGGCCTTGTTTATCTGAAGGTCTACCTTCTGCTAGAGAAGAGATT
TTGCTGAATATTGATCACCATGACTGGAAAAATAGAGCTTTACGAATGGG
TGATTGGAAAATTATACAAGAAAGTATGATGGTTTTGATTTTTTTTCCAT
GCTTTCTTTTGTACGCTAGCAATACAGCATCAGTTTTATTGAGTTGTAGA
TTAAAAAAGGTAGTGTCCTTAGCGAAAAGAAAAGGTGGGATAAGATTATT
GTTTTCTATTCTTATTGATATTGTGTGTTTCGTTAGATACTAACTACAAA
ATATACAAGTGTCGCTGTATAATAACGTGGTCAATCAATTTTCCCCGACG
GTCAGATTCTTTTACTTTCAAGTATATTTTTGAATGTGAAAATATTTTTC
TTCTAAAAAGCTATTTTAATATACTGTAATCGATTTTAATCAATCATCAA
TGTTGAAACAATTAATGTTTATTGTTCTTGCCTTTTAAAAATTAGATAAA
CAATATTATCTCCTTTATCTTTCCTTTTTAGCTGGTACATGGGACGGTTG
GTATGCCCCGCCAGGGGTTATTGGTATGGAAAACAATATTCTGGTTGACG
ACCCTTATATCACATTCCACAGTCAACTAGTGGTCAACTGTGGTGCTAAA
CCTGCCAATGTTTCGAGCACGTGTTTTAAGAAACCCAATTTCTGTTTATT
CAACATCATCGACGATCCTTGCGAATATCATGATTTGTCAGGCAAATATC
CTGAACTTCTGGAAACGATGAAGAAAAGATTACAATTTTATGAAGATAGT
GCAGTTCCACCAAGAAGAAATGAGACAGGGGACCCCAGAGCAAACCCAAA
GCTCCATAACGGTGTATGGGTACCTTGGATCACTCTACCTTAAAACCAAA
GTCAAGAAATTGATTCTTAAAAGGATTATTGTTATTCGTAAGGTTTGTAG
GGTCCTAGACCTAACACCTAGAGCCACTAAAAAACTGTGCTACATTTCGT
CGTCCATCGATGCATTTTTGAATTTAGACTTTAAAGGGAACGACGCATGG
TATATTTATGAAATGCTGATCTAGCATTGGCACAAACACCCATACGGAGG
AGTATTTAGGAGTGCTGGATCATAACAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
AAACGTCTTTGCAATCTTTTTGTTTACATTTTGTCTTCATTCACTTTCGT
TTACTGTTGAAAACATAACAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNATTACTCCTTATAATTATGTGTAGTTTTTAGAGTTTATG
TGTAAAGAGTTTATTTAGAGTTTAATCGATTCACTTTCACTTCACTGTAG
GAAGGGTTGTCAAGAGCAAGGTGTTAGATTTTCAAAAGAACACACATTAT
GCTCAAGAATCAACTTGTTGGTGACGTAATTGAAGTGTGTGTCATTCATT
TTCTCTTTAAATGTATATCTTTAAACTCTCCTCTCCTTTGGACGGTGGGA
ACCTTTTTTGAAAATTTTGACTTCGCAATTCCTACTCTTACATATACCTA
AAAGATATATAATGATGACAAAAACAGACGATCTAATCCTTGGGTTGAAC
ATTTGGTGCATGATAGAACGGAGTAATAAAAAGTGCTATTGATTAATACT
TTAAAACTAACTTTTAGCCTGTAATAAGCCTGTATGATGGCGGAGTACTT
TCTCATATTTTAGAGATACAGACACACAAACTTTTCTACTCAATGACATG
CTCCTAAGCTCGACACACTGATTTTTTATACAAGATGACATCATCGATAT
GTATGCATACTTGATACTGCCAAAAATACAATTAAAATCTAACTGTCATA
AGGTTTTTCTAATCTCCCCATGTTATGATGTTGTCTTTAAATAATTTCTC
ACCGTTTTTGACAATTTTTCAGTTTTATTTCATATATGTCATTTTGATAC
GCATTTCAAATTTTTAGATAAATACAATGTGAGTGCGATGTAACTTAGTG
AGAAAACATTTTAATTATAAAGTCTTGTAACAACTTTCTGTCATATGATC
TTGATCTTTTTGAGCAAGTTTTTTATTTTACGTTCATTGCTAACAATTTT
TTTCAGTTTCAACCTTGTGAACTGTATAAATTTGTTGTAATATCTCCACA
CATAATATTGAGATTTATCTTAATAGACAACTCTTAACACAGGGTAAATA
GTTAAATGACAAAATGAAGGCAATTTTATGGCAATTTTTCTTGGTAGCTT
CCCTCGTTGGTCAAATTTTGTGCGCAGAGAAACCAAACTTTGTTATTATC
GTAGCTGACGACTTGGTAAGAACACGACAAATTGAACCATAGGTAAACCC
AAAAATCTAATAGAAGAAAGGGATGCTATAATCCTGAAGCAAAATCTTAA
GATCTCAAATGTGCGAACCTTAAGATCTCCAAATTCTGTTGTAATTTTTT
ACAAATTCATGAATCGTAGAAATTGAGTCCCTTAATTGAAAGGGGCGTTA
ATTCAGGGGTTGGACAATCTCACCATTCTACAACAGACCTATGACCCTGG
GCTTAATAAAATTTGAAAAGCTTTGGTCAATGAGAAAATCCACCTAAACT
AATTTGTGTTAGCCTTTTCTAATGTCTGCTTTTCCACCAAAGGGATGGAA
TGATGTCAGCTTCCACGGATCAGATCAAATCCCAACACCTAACATTGATA
AATTGGCAAAAGAAGGAATTATTTTGAATAATTATTATGTTGCACCTATA
TGCTCACCATCTCGGAGTGCCATCATGACTGGGAGATACCCTATTCATAC
AGGTTGATTATTTTCTTATCAAGTTCATAGGATTTAATTTCAATAAAACA
CGAAAATTTCTGTATCATTATTACAAGAAATACCAAGCAAGGTTTTCAAG
CTTGCTAACGTTTAAATTTCAAGTCAGTACTCTCAAACTGACCAGCGCCA
GTTGCAAAAGCCATTGACAAATAAGAAAGAATGAAATGTTTTGAGGGGGT
TGGATATGGTCTAATTATAGTATTTCTACTTTTGATGTTCAGGTATGCAA
GTAAGCACAATATTTGCATATGACACATGGGGTGTCAGTTTAAATGAAAC
ATTCTTACCAGAGATTCTCAAAGAACAGGGATATGCAACGCATGCTATCG
GCAAGGTATGTCGTGTATTAACATTCGGAGATTTTTTCATCCTGTGAGAG
ATGCTTTTTTTTCTTTGTTTGACTTATTAGTATTGCACGCGTTCTATGAT
TCGAGAAGCAATGTTCACAATCTTTTAGAGAGTCAAAGTTGGATCTTCTT
GAGAAATGAATGCACTCTACCCCAAGAATGAAATATATAATCCATAAAAT
CCAAACTTTCCGTCATTTTATTTCTTAGTGGCATGTTGGTATGTTTGCGA
AAGAATACACTCCAACATACAGAGGCTTTGATTCGTTTTATGGCTACTAC
CTTGGGAAAGCTGATTATTGGGACCACTCCAATAACGAGAAGTACTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009225-exon-sc0000091-1575043694:43679..43905 | TCONS_00009225-exon-sc0000091-1575043694:43679..43905 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1575043694:43220..43379 | TCONS_00009225-exon-sc0000091-1575043694:43220..43379 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1575043694:42990..43102 | TCONS_00009225-exon-sc0000091-1575043694:42990..43102 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1575043694:35957..36077 | TCONS_00009225-exon-sc0000091-1575043694:35957..36077 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1510915933:43679..43905 | TCONS_00009225-exon-sc0000091-1510915933:43679..43905 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1510915933:43220..43379 | TCONS_00009225-exon-sc0000091-1510915933:43220..43379 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1510915933:42990..43102 | TCONS_00009225-exon-sc0000091-1510915933:42990..43102 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1510915933:35957..36077 | TCONS_00009225-exon-sc0000091-1510915933:35957..36077 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1491911889:43679..43905 | TCONS_00009225-exon-sc0000091-1491911889:43679..43905 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1491911889:43220..43379 | TCONS_00009225-exon-sc0000091-1491911889:43220..43379 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1491911889:42990..43102 | TCONS_00009225-exon-sc0000091-1491911889:42990..43102 | Clytia hemisphaerica | exon |
| TCONS_00009225-exon-sc0000091-1491911889:35957..36077 | TCONS_00009225-exon-sc0000091-1491911889:35957..36077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:35957..43905 - |
Blast
BLAST of TCONS_00009225 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 9.040e-49 Identity = 74/141 (52.48%), Postives = 101/141 (71.63%), Query Frame = 3
Query: 183 CAEKPNFVIIVADDLGWNDVSFHGSDQIPTPNIDKLAKEGIILNNYYVAPICSPSRSAIMTGRYPIHTGMQESTVFASDTWGVGLNETFLPEILKEQGYSTHAVGKWHVGMFAKEYTPTYRGFDSFYGYYLGKADYWDHSN 605
+ P+ V ++ADDLGWNDV FHGS +I TP++D LA G++L+NYY P+C+PSRS ++TGRY I TG+Q ++ V L+E LP++LKE GY+TH VGKWH+GM+ KE PT RGFD+++GY LG DY+ H
Sbjct: 41 ASRPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHER 180
The following BLAST results are available for this feature:
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