TCONS_00009223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009223
Unique NameTCONS_00009223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009223 ID=TCONS_00009223|Name=TCONS_00009223|organism=Clytia hemisphaerica|type=transcript|length=188bp
TTTAAATGAAACATTCTTACCAGAGATTCTCAAAGAACAGGGATATGCAA
CGCATGCTATCGGCAAGTGGCATGTTGGTATGTTTGCGAAAGAATACACT
CCAACATACAGAGGCTTTGATTCGTTTTATGGCTACTACCTTGGGAAAGC
TGATTATTGGGACCACTCCAATAACGAGAAGTACTGGG
Run BLAST on NCBI

transcript from alignment at sc0000091:35957..36367-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009223 ID=TCONS_00009223|Name=TCONS_00009223|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000091:35957..36367- (Clytia hemisphaerica)
TTTAAATGAAACATTCTTACCAGAGATTCTCAAAGAACAGGGATATGCAA
CGCATGCTATCGGCAAGGTATGTCGTGTATTAACATTCGGAGATTTTTTC
ATCCTGTGAGAGATGCTTTTTTTTCTTTGTTTGACTTATTAGTATTGCAC
GCGTTCTATGATTCGAGAAGCAATGTTCACAATCTTTTAGAGAGTCAAAG
TTGGATCTTCTTGAGAAATGAATGCACTCTACCCCAAGAATGAAATATAT
AATCCATAAAATCCAAACTTTCCGTCATTTTATTTCTTAGTGGCATGTTG
GTATGTTTGCGAAAGAATACACTCCAACATACAGAGGCTTTGATTCGTTT
TATGGCTACTACCTTGGGAAAGCTGATTATTGGGACCACTCCAATAACGA
GAAGTACTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005176XLOC_005176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009223-exon-sc0000091-1575043694:36301..36367TCONS_00009223-exon-sc0000091-1575043694:36301..36367Clytia hemisphaericaexon
TCONS_00009223-exon-sc0000091-1575043694:35957..36077TCONS_00009223-exon-sc0000091-1575043694:35957..36077Clytia hemisphaericaexon
TCONS_00009223-exon-sc0000091-1510915933:36301..36367TCONS_00009223-exon-sc0000091-1510915933:36301..36367Clytia hemisphaericaexon
TCONS_00009223-exon-sc0000091-1510915933:35957..36077TCONS_00009223-exon-sc0000091-1510915933:35957..36077Clytia hemisphaericaexon
TCONS_00009223-exon-sc0000091-1491911889:36301..36367TCONS_00009223-exon-sc0000091-1491911889:36301..36367Clytia hemisphaericaexon
TCONS_00009223-exon-sc0000091-1491911889:35957..36077TCONS_00009223-exon-sc0000091-1491911889:35957..36077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:35957..36367 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.50825	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00009223 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.566e-18
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 2 
Query:    2 LNETFLPEILKEQGYATHAIGKWHVGMFAKEYTPTYRGFDSFYGYYLGKADYWDH 166
            L+E  LP++LKE GY TH +GKWH+GM+ KE  PT RGFD+++GY LG  DY+ H
Sbjct:  124 LDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSH 178
The following BLAST results are available for this feature:
BLAST of TCONS_00009223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSB1.566e-1858.18Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1[more]
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