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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009211 ID=TCONS_00009211|Name=TCONS_00009211|organism=Clytia hemisphaerica|type=transcript|length=1113bp CGAGTAATCAATCAACCCTTGCAATATCAACCCTTCTATCACGAACCCCC GGATTgtaaagaaaacaatttcagccaatcagaatcaAGAGAATCGACGA TACAACCCCTATATAACGATGCATCAAAGCAGGTTCAGAATCACTTACAA CTTGGATTCGagaggaaaaagaagaagaaaacgcAGAAATTCAAAAACTA AACATGGCTTGGGTCAAACTTTTCGCTCTTGCTTTCATTGCATTAGCAGC TgCAAGTGATTATCATTTGGAGTTCAATGAAAAACAACAGAAATATGACG AACGAGTTCACATTGACAAACAAAATGGTATCCTCATCTACAGAGTGCCA AAACACGCTGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAATAagCA AATGACAGTCTTGAAGGTTTTCACAGAGAAAAGATGCTACATTTCAAAGA TGGGAAAAGATGAACCATCAATCGATGACATTGAATTGGGAATGCAAAAA GCCAATGGAGTTTTTGATTCCAAGAAATATTGGATTGAAACTGAAGACGT CATCACCCTTGGTCACGCAAACAAATTAAGCCTTtcgtccgccattttga atttctgtGGAAGTTTTGACATCTTGGACACTGTGAAAAACAACCAACAA ACACGGGAAGCACTCAAAATGAAAGCCGTTGCCCAATACAAAAGTGGAAA AAGCAAACGATTACTCGTCGAAGATTACGTCTACTGCAAAAACGATCAAT CAAAAATGAGCGCTGAAATGGccaaatgtaataaaaaattcGATCAACTT GAATTCAACTGCAGATTCGTCAGACTTGGCACTTGCATTTACACAGTCAA ATGTCTCTTGACACAACAAGGATACAATTGCCCTGGTACACATCAATACA CTCATTTGAACTGCTGTACAATCAGATGTAAAGCttagataaataaattt gaaatttatatcagctaaatgattgaaaaaatacttcaaatGTATACAAA ATCTTTCTATTGTTTGTAATTTAAAGTCCAAATTTCAATACCCAACTCAT CTCCTAACAAAATCCTTAGACAATTGAATACCCTATTTTTTAGCTATGAG TAACCTCAAAATA Run BLAST on NCBI protein sequence of TCONS_00009211-protein >TCONS_00009211-protein ID=TCONS_00009211-protein|Name=TCONS_00009211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MAWVKLFALAFIALAAASDYHLEFNEKQQKYDERVHIDKQNGILIYRVPK HAGVVAAHYLKDFNKQMTVLKVFTEKRCYISKMGKDEPSIDDIELGMQKA NGVFDSKKYWIETEDVITLGHANKLSLSSAILNFCGSFDILDTVKNNQQT REALKMKAVAQYKSGKSKRLLVEDYVYCKNDQSKMSAEMAKCNKKFDQLE FNCRFVRLGTCIYTVKCLLTQQGYNCPGTHQYTHLNCCTIRCKA Run BLAST on NCBI transcript from alignment at sc0000091:545168..548441+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009211 ID=TCONS_00009211|Name=TCONS_00009211|organism=Clytia hemisphaerica|type=transcript|length=3274bp|location=Sequence derived from alignment at sc0000091:545168..548441+ (Clytia hemisphaerica) CGAGTAATCAATCAACCCTTGCAATATCAACCCTTCTATCACGAACCCCC
GGATTgtaaagaaaacaatttcagccaatcagaatcaAGAGAATCGACGA
TACAACCCCTATATAACGATGCATCAAAGCAGGTTCAGAATCACTTACAA
CTTGGATTCGagaggaaaaagaagaagaaaacgcAGAAATTCAAAAACTA
AACATGGTAAGAAGATATTTGTAGTCATACTCGTTACATACAATAGTTTA
ATATTGCTGTTAGGTTTGTCTCTTCCTTATCTTTTTCAGTACTATCCTTT
TAAATTTTCTACATTTATAAACAATTCTTTTGGCTGCCGGTGATTTTGAT
TGGGCCATAGGGGTCCTTTTTCACAATCTCGAAAGTCCcccaaaggggta
caaaaatcattaaaaagcaaagctccaaaattacgaaaatcaaaaatcga
ctccctcaaagggtcatgcatttttttaatttggactaaaatttgaaagt
ttttgactgaaattttgtgGAAATAGTCTCTAAGGGtgacaaaaacgtca
aaaaacggactaaattttcgaaatttagttTCCCTTTTCATCTTGCAAAC
CCATTGCGTTTGAAGTTTACATATTGTGGCTTTGAAAAATCACCTAAATT
TCAGTTTTCCAAAATACTGAAGAGTTAACCTGTAATATTAATCAATTACT
TTTGTTCCGTTTCAGGCTTGGGTCAAACTTTTCGCTCTTGCTTTCATTGC
ATTAGCAGCTGTAAGTAATTTATTAAAAGATTATCAAAAAGCTAATATTT
TTCGGTATTTCCTCCATCCAAAATGGAAGGTTAAATATTTTATCTGCCAA
TCAAAAGTCTTCACTGCTGTTTAGAACCATACCCAAACCCTGCAAAAGAA
CATCTACTTGTAGAAGAACcatttaaggggggggggggggcaattcCGAG
ACTCTGCCAAGTTCTGTCACATCCACTCACTTTGGTTGAAATCCTTGTTT
CGGGGCAAGATGCGTTCTAGAGCTCAACATAATATAGGacctataaattt
aaatttggcggaaagTAGTTGTAAGCGACTTTGGCGAAATCTTTTGataa
ttcgccaaattcgccaaaatttcttcccttaaggtatctcTGCACAAAAA
TATTAGatatcactttttttttgcaggCAAGTGATTATCATTTGGAGTTC
AATGAAAAACAACAGAAATATGACGAACGAGTTCACATTGACAAACAAAA
TGGTATCCTCATCTACAGAGTGCCAAAACACGCTGGAGTGGTTGCTGCTC
ACTATTTGAAAGATTTCAATAaggtattttctttttgaattatagaGAAA
GTCTCTAATTTGGGGACAAGGAGAGATATTTTCTGATCGGTAAGGTCCTG
ATGAGAAAAGGCACATGCAGATCTATAAAAGGTcagattttgaaagattt
tgtttttatttaaaatgaaGTTTAACAAAGAACtaaatttttctttccaa
aaaccaGTATGTCATAATATGGAACCTTAAAGtatgtctcaaaagtatgt
gagCAGTCTTTTTACCTTTTCTAAGCACCCATTTATGCTATGTTCGAAAC
TTAtaaaccgttggaaagatatttctaaGGAGAATAATTCAAgggtaaaa
gatttttgaaaaatttgaaaattattaagaatgatttggaaatatctttc
caacggtgtataactttcTAACAAAGCATTGCtgagaaaatgctaaaaaa
ctaaagtgtccacatacttttgagacagactttagttgtAAGTAGTAGGT
TTTTTCTGAAATGTGTGAACGATCTCTTTTATTATCTGACACTTTGATTA
CCCAGCGGTATACTCTTTATACTTTTTGTTGTAGCAAATGACAGTCTTGA
AGGTTTTCACAGAGAAAAGATGCTACATTTCAAAGATGGGAAAAGATGAA
CCATCAATCGATGACATTGAATTGGGAATGCAAAAAGTGAGTATAGAACG
GGTATAAAACTAAATGAAACTATATGAGCACTTCCAGAAAAATATTGtct
gaaaatagaatatcactTTATCGTTTAAGGATAAATTTACAGCGAAAAGC
TGCTTTCGATTtaaattttcaaccttttcaCCGCGAAATCACCCAAAAAT
CTAAGAGATCATAACAGCATTTTTCATCCTGTTCGGAGTataacatcccc
ttctcacagacccggtgggaacCTCTCCCACTGGAATAATTAGCCAAAAA
GTCTTCCCCAATGGAAATCTATGCCAGCTATAAAAAACATGGGAGTATCA
ACCCCCATCGGTTACTTTcaccccactggctgaaaaaatcttaccgGGCT
TGTAAGAAGACGGTTTTAGGAACCTTGATatctattttttaaaaacatcg
aGTGAAAATCCGTTTATTCCTTTTCCACTAACAGGCCAATGGAGTTTTTG
ATTCCAAGAAATATTGGATTGAAACTGAAGACGTCATCACCCTTGGTCAC
GCAAACAAATTAAGCCTTtcgtccgccattttgaatttctgtGGAAGTTT
TGACATCTTGGACACTGTGAAAAACAACCAACAAACACGGGAAGCACTCA
AAATGAAAGCCGTTGGTGAGTTGATTGGCTTTTGAGGGGTCTGGTAATGA
ATATACaagaaaatgacgtcaaaatactttattttaagaaaatgtcaatg
caatgacttcttagATTTGAGTGGTTTTGGAACATGGTTTTAGATTTCTC
GAAATTACCCTCTTCTCGAAGACAATCTTTACGCTTTAGCCTGACTAGTT
TTGAACTTTTCAACTTATTTAGCACGTCTAATTTTCTTCCAGCCCAATAC
AAAAGTGGAAAAAGCAAACGATTACTCGTCGAAGATTACGTCTACTGCAA
AAACGATCAATCAAAAATGAGCGCTGAAATGGccaaatgtaataaaaaat
tcGATCAACTTGAATTCAACTGCAGATTCGTCAGACTTGGCACTTGCATT
TACACAGTCAAATGTCTCTTGACACAACAAGGATACAATTGCCCTGGTAC
ACATCAATACACTCATTTGAACTGCTGTACAATCAGATGTAAAGCttaga
taaataaatttgaaatttatatcagctaaatgattgaaaaaatacttcaa
atGTATACAAAATCTTTCTATTGTTTGTAATTTAAAGTCCAAATTTCAAT
ACCCAACTCATCTCCTAACAAAATCCTTAGACAATTGAATACCCTATTTT
TTAGCTATGAGTAACCTCAAAATA Coding sequence (CDS) from alignment at sc0000091:545168..548441+ >TCONS_00009211 ID=TCONS_00009211|Name=TCONS_00009211|organism=Clytia hemisphaerica|type=CDS|length=4410bp|location=Sequence derived from alignment at sc0000091:545168..548441+ (Clytia hemisphaerica) ATGGCTTGGGTCAAACTTTTCGCTCTTGCTTTCATTGCATTAGCAGCTgC AAGTGATTATCATTTGGAGTTCAATGAAAAACAACAGAAATATGACGAAC GAGTTCACATTGACAAACAAAATGGTATCCTCATCTACAGAGTGCCAAAA CACGCTGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAATAagCAAAT GACAGTCTTGAAGGTTTTCACAGAGAAAAGATGCTACATTTCAAAGATGG GAAAAGATGAACCATCAATCGATGACATTGAATTGGGAATGCAAAAAGCC AATGGAGTTTTTGATTCCAAGAAATATTGGATTGAAACTGAAGACGTCAT CACCCTTGGTCACGCAAACAAATTAAGCCTTtcgtccgccattttgaatt tctgtGGAAGTTTTGACATCTTGGACACTGTGAAAAACAACCAACAAACA CGGGAAGCACTCAAAATGAAAGCCGTTGCCCAATACAAAAGTGGAAAAAG CAAACGATTACTCGTCGAAGATTACGTCTACTGCAAAAACGATCAATCAA AAATGAGCGCTGAAATGGccaaatgtaataaaaaattcGATCAACTTGAA TTCAACTGCAGATTCGTCAGACTTGGCACTTGCATTTACACAGTCAAATG TCTCTTGACACAACAAGGATACAATTGCCCTGGTACACATCAATACACTC ATTTGAACTGCTGTACAATCAGATGTAAAGCttagATGGCTTGGGTCAAA CTTTTCGCTCTTGCTTTCATTGCATTAGCAGCTgCAAGTGATTATCATTT GGAGTTCAATGAAAAACAACAGAAATATGACGAACGAGTTCACATTGACA AACAAAATGGTATCCTCATCTACAGAGTGCCAAAACACGCTGGAGTGGTT GCTGCTCACTATTTGAAAGATTTCAATAagCAAATGACAGTCTTGAAGGT TTTCACAGAGAAAAGATGCTACATTTCAAAGATGGGAAAAGATGAACCAT CAATCGATGACATTGAATTGGGAATGCAAAAAGCCAATGGAGTTTTTGAT TCCAAGAAATATTGGATTGAAACTGAAGACGTCATCACCCTTGGTCACGC AAACAAATTAAGCCTTtcgtccgccattttgaatttctgtGGAAGTTTTG ACATCTTGGACACTGTGAAAAACAACCAACAAACACGGGAAGCACTCAAA ATGAAAGCCGTTGCCCAATACAAAAGTGGAAAAAGCAAACGATTACTCGT CGAAGATTACGTCTACTGCAAAAACGATCAATCAAAAATGAGCGCTGAAA TGGccaaatgtaataaaaaattcGATCAACTTGAATTCAACTGCAGATTC GTCAGACTTGGCACTTGCATTTACACAGTCAAATGTCTCTTGACACAACA AGGATACAATTGCCCTGGTACACATCAATACACTCATTTGAACTGCTGTA CAATCAGATGTAAAGCttagATGGCTTGGGTCAAACTTTTCGCTCTTGCT TTCATTGCATTAGCAGCTgCAAGTGATTATCATTTGGAGTTCAATGAAAA ACAACAGAAATATGACGAACGAGTTCACATTGACAAACAAAATGGTATCC TCATCTACAGAGTGCCAAAACACGCTGGAGTGGTTGCTGCTCACTATTTG AAAGATTTCAATAagCAAATGACAGTCTTGAAGGTTTTCACAGAGAAAAG ATGCTACATTTCAAAGATGGGAAAAGATGAACCATCAATCGATGACATTG AATTGGGAATGCAAAAAGCCAATGGAGTTTTTGATTCCAAGAAATATTGG ATTGAAACTGAAGACGTCATCACCCTTGGTCACGCAAACAAATTAAGCCT TtcgtccgccattttgaatttctgtGGAAGTTTTGACATCTTGGACACTG TGAAAAACAACCAACAAACACGGGAAGCACTCAAAATGAAAGCCGTTGCC CAATACAAAAGTGGAAAAAGCAAACGATTACTCGTCGAAGATTACGTCTA CTGCAAAAACGATCAATCAAAAATGAGCGCTGAAATGGccaaatgtaata aaaaattcGATCAACTTGAATTCAACTGCAGATTCGTCAGACTTGGCACT TGCATTTACACAGTCAAATGTCTCTTGACACAACAAGGATACAATTGCCC TGGTACACATCAATACACTCATTTGAACTGCTGTACAATCAGATGTAAAG CttagATGGCTTGGGTCAAACTTTTCGCTCTTGCTTTCATTGCATTAGCA GCTgCAAGTGATTATCATTTGGAGTTCAATGAAAAACAACAGAAATATGA CGAACGAGTTCACATTGACAAACAAAATGGTATCCTCATCTACAGAGTGC CAAAACACGCTGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAATAag CAAATGACAGTCTTGAAGGTTTTCACAGAGAAAAGATGCTACATTTCAAA GATGGGAAAAGATGAACCATCAATCGATGACATTGAATTGGGAATGCAAA AAGCCAATGGAGTTTTTGATTCCAAGAAATATTGGATTGAAACTGAAGAC GTCATCACCCTTGGTCACGCAAACAAATTAAGCCTTtcgtccgccatttt gaatttctgtGGAAGTTTTGACATCTTGGACACTGTGAAAAACAACCAAC AAACACGGGAAGCACTCAAAATGAAAGCCGTTGCCCAATACAAAAGTGGA AAAAGCAAACGATTACTCGTCGAAGATTACGTCTACTGCAAAAACGATCA ATCAAAAATGAGCGCTGAAATGGccaaatgtaataaaaaattcGATCAAC TTGAATTCAACTGCAGATTCGTCAGACTTGGCACTTGCATTTACACAGTC AAATGTCTCTTGACACAACAAGGATACAATTGCCCTGGTACACATCAATA CACTCATTTGAACTGCTGTACAATCAGATGTAAAGCttagATGGCTTGGG TCAAACTTTTCGCTCTTGCTTTCATTGCATTAGCAGCTgCAAGTGATTAT CATTTGGAGTTCAATGAAAAACAACAGAAATATGACGAACGAGTTCACAT TGACAAACAAAATGGTATCCTCATCTACAGAGTGCCAAAACACGCTGGAG TGGTTGCTGCTCACTATTTGAAAGATTTCAATAagCAAATGACAGTCTTG AAGGTTTTCACAGAGAAAAGATGCTACATTTCAAAGATGGGAAAAGATGA ACCATCAATCGATGACATTGAATTGGGAATGCAAAAAGCCAATGGAGTTT TTGATTCCAAGAAATATTGGATTGAAACTGAAGACGTCATCACCCTTGGT CACGCAAACAAATTAAGCCTTtcgtccgccattttgaatttctgtGGAAG TTTTGACATCTTGGACACTGTGAAAAACAACCAACAAACACGGGAAGCAC TCAAAATGAAAGCCGTTGCCCAATACAAAAGTGGAAAAAGCAAACGATTA CTCGTCGAAGATTACGTCTACTGCAAAAACGATCAATCAAAAATGAGCGC TGAAATGGccaaatgtaataaaaaattcGATCAACTTGAATTCAACTGCA GATTCGTCAGACTTGGCACTTGCATTTACACAGTCAAATGTCTCTTGACA CAACAAGGATACAATTGCCCTGGTACACATCAATACACTCATTTGAACTG CTGTACAATCAGATGTAAAGCttagATGGCTTGGGTCAAACTTTTCGCTC TTGCTTTCATTGCATTAGCAGCTgCAAGTGATTATCATTTGGAGTTCAAT GAAAAACAACAGAAATATGACGAACGAGTTCACATTGACAAACAAAATGG TATCCTCATCTACAGAGTGCCAAAACACGCTGGAGTGGTTGCTGCTCACT ATTTGAAAGATTTCAATAagCAAATGACAGTCTTGAAGGTTTTCACAGAG AAAAGATGCTACATTTCAAAGATGGGAAAAGATGAACCATCAATCGATGA CATTGAATTGGGAATGCAAAAAGCCAATGGAGTTTTTGATTCCAAGAAAT ATTGGATTGAAACTGAAGACGTCATCACCCTTGGTCACGCAAACAAATTA AGCCTTtcgtccgccattttgaatttctgtGGAAGTTTTGACATCTTGGA CACTGTGAAAAACAACCAACAAACACGGGAAGCACTCAAAATGAAAGCCG TTGCCCAATACAAAAGTGGAAAAAGCAAACGATTACTCGTCGAAGATTAC GTCTACTGCAAAAACGATCAATCAAAAATGAGCGCTGAAATGGccaaatg taataaaaaattcGATCAACTTGAATTCAACTGCAGATTCGTCAGACTTG GCACTTGCATTTACACAGTCAAATGTCTCTTGACACAACAAGGATACAAT TGCCCTGGTACACATCAATACACTCATTTGAACTGCTGTACAATCAGATG TAAAGCttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009211-exon-sc0000091-1491911889:545168..545373 | TCONS_00009211-exon-sc0000091-1491911889:545168..545373 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1510915933:545168..545373 | TCONS_00009211-exon-sc0000091-1510915933:545168..545373 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1575043694:545168..545373 | TCONS_00009211-exon-sc0000091-1575043694:545168..545373 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1491911889:545883..545927 | TCONS_00009211-exon-sc0000091-1491911889:545883..545927 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1510915933:545883..545927 | TCONS_00009211-exon-sc0000091-1510915933:545883..545927 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1575043694:545883..545927 | TCONS_00009211-exon-sc0000091-1575043694:545883..545927 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1491911889:546344..546490 | TCONS_00009211-exon-sc0000091-1491911889:546344..546490 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1510915933:546344..546490 | TCONS_00009211-exon-sc0000091-1510915933:546344..546490 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1575043694:546344..546490 | TCONS_00009211-exon-sc0000091-1575043694:546344..546490 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1491911889:547052..547153 | TCONS_00009211-exon-sc0000091-1491911889:547052..547153 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1510915933:547052..547153 | TCONS_00009211-exon-sc0000091-1510915933:547052..547153 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1575043694:547052..547153 | TCONS_00009211-exon-sc0000091-1575043694:547052..547153 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1491911889:547602..547782 | TCONS_00009211-exon-sc0000091-1491911889:547602..547782 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1510915933:547602..547782 | TCONS_00009211-exon-sc0000091-1510915933:547602..547782 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1575043694:547602..547782 | TCONS_00009211-exon-sc0000091-1575043694:547602..547782 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1491911889:548010..548441 | TCONS_00009211-exon-sc0000091-1491911889:548010..548441 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1510915933:548010..548441 | TCONS_00009211-exon-sc0000091-1510915933:548010..548441 | Clytia hemisphaerica | exon |
TCONS_00009211-exon-sc0000091-1575043694:548010..548441 | TCONS_00009211-exon-sc0000091-1575043694:548010..548441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000091 | supercontig | sc0000091:545168..548441 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR007084 | BRICHOS_dom |
Blast
The following BLAST results are available for this feature:
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