Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009210 ID=TCONS_00009210|Name=TCONS_00009210|organism=Clytia hemisphaerica|type=transcript|length=1418bp
TGCGAGGAAAAGTTTCAAACTTCTCAATTCTGTGGtttttatttgttgtt
ttttgtatcGAAAAAAACTTTGGTTCATTGATTACAACATGAAGTTGTTT
CAAATGGTTTCAAGAAGTTGCTTCAAAAGATAAAGCTGACGTGATGTGTT
TTGGTTGACTTGGATGTTTTGATGTGTTGCGACGGATGGTTAAATTGCCA
TCTTGCCAGCTTTTCAAGAGTGTGCAAAAATGGTCACCCCCTCCCGTCAT
GAGTATCGCCCTTCTTGAAGAACGTATACCTAACCCCTAAGAAAGTTATT
AAGTCATTTACTCCTccctttatttttcatttgcaCTCCTCTTTTGTGAC
TTTCTTCTACTCCCCATTTAGAAAGGGTATTTATTTCTTCCTCGTCTATT
AATTATTTACCCCTCCTTTTATGAGGCCCTTTTTTACCCCTCCTCTTTTT
GAGAAGCATCTACTCATCTATCTCATTTAGAATGGAGGAGGTTCCCTCTA
TTCTCGTCTTTCCAAGTTAAATTTCTTTACCCATACAACGGTCTAGTTGC
TACTTTTTACATTTCCAGGTTAGCAATAATTTACTACAGTACCATCAGAC
AACCATTGGAACTGAATCATGCCTGTTGACAAGTCATCGGCGACACCAAC
AAATTATCAATTGGTGCTTCTTGGAGATCACGGTGCTGGTAAATCAAGTA
TTTTCACTCGCTTCAAAGAAGATCCCTTCAAAACAACCTTTGAGGATTAT
TCTTTTGATCAAACCATTAAAGAATTTACCAGAAACAACCGCCAAATGCA
GCTTCAACTTTACGACACAGCTGGAATGGAACGTGCGGGTGATATGACGT
CAAGTTACTTCAGAACGGTGGACGGTGTATTACTTGTTTACTCGTGCACC
GACAATGAAACGTTAGTTAACATCAAGTCAAGGTGGGTGGAAAATTGTAA
ACGTTATTGTAAAGATAATACTTTATTCTTCGTTGTGGGTACAAAAATCG
ATAATTGTGATTCTATAACTGTCAAAGAGGATTACCCCAAAGAAATGTTG
CAATCGCTACCGATAAAGAtcgaaaatttctatcgaattTCTTCGAAGGA
AGGGACAAATTTTGATTCCTTTATCGATAATGTAATTGATATTATATTGG
CGAATCGTGACGTCAATGGAAACGATATTCCTGATGGTGGTAGAGTGGAT
ATTACGAAACACTGTGAAAAGAAGTCTTCCTGCGGATGCTCTTGATATAT
TGTGACTTGTTTTTCAGAATCTCAAGAGTAATTGAAATTCATTTCTAATC
ATCTCGTTCTTTCGACTTTTaacataccgggtgacccacgaaaaggttca
gacgtttctcgacgtcttgaggccgaacaaatctCCCAAAGTGCTTAgag
tttagatatttagaaagt Run BLAST on NCBI transcript from alignment at sc0000091:539883..541595+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009210 ID=TCONS_00009210|Name=TCONS_00009210|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at sc0000091:539883..541595+ (Clytia hemisphaerica)
TGCGAGGAAAAGTTTCAAACTTCTCAATTCTGTGGtttttatttgttgtt
ttttgtatcGAAAAAAACTTTGGTTCATTGATTACAACATGAAGTTGTTT
CAAATGGTTTCAAGAAGTTGCTTCAAAAGATAAAGCTGACGTGATGTGTT
TTGGTTGACTTGGATGTTTTGATGTGTTGCGACGGATGGTTAAATTGCCA
TCTTGCCAGCTTTTCAAGAGTGTGCAAAAATGGTCACCCCCTCCCGTCAT
GAGTATCGCCCTTCTTGAAGAACGTATACCTAACCCCTAAGAAAGTTATT
AAGTCATTTACTCCTccctttatttttcatttgcaCTCCTCTTTTGTGAC
TTTCTTCTACTCCCCATTTAGAAAGGGTATTTATTTCTTCCTCGTCTATT
AATTATTTACCCCTCCTTTTATGAGGCCCTTTTTTACCCCTCCTCTTTTT
GAGAAGCATCTACTCATCTATCTCATTTAGAATGGAGGAGGTTCCCTCTA
TTCTCGTCTTTCCAAGTTAAATTTCTTTACCCATACAACGGTCTAGTTGC
TACTTTTTACATTTCCAGGTTAGCAATAATTTACTACAGTACCATCAGAC
AACCATTGGAACTGAATCATGCCTGTTGACAAGTCATCGGCGACACCAAC
AAATTATCAATTGGTGCTTCTTGGAGATCACGGTGCTGGTAAATCAAGTA
TTTTCACTCGCTTCAAAGAAGATCCCTTCAAAACAACCTTTGAGGATTAT
TCTTTTGATCAAACCATTAAAGAATTTACCAGAAACAACCGCCAAATGCA
GGTTTGTGTATGTGTTTTACATTAGTGGCACGTGGCTGCTATCCAAACTC
ATGTTTTGAAAGCCGTCGTCTGACAATGACATACCAGTGTCGGGGTATAG
AacaaaaaatcgattttttggTTGCGCATGCTTGGCTTCTTTAAAGTTTT
CCTTTAGAcaatgctatcgtccgttagagggATTAATAGTAAACACGGGA
AAATATATGCGTAGAGTAAAAAAATAGTGAATGGGATGGTGTAGTTTTCC
TTATAAATAATGTATCAATGACACAATTTCACATGTATTTTTTTAGCTTC
AACTTTACGACACAGCTGGAATGGAACGTGCGGGTGATATGACGTCAAGT
TACTTCAGAACGGTGGACGGTGTATTACTTGTTTACTCGTGCACCGACAA
TGAAACGTTAGTTAACATCAAGTCAAGGTGGGTGGAAAATTGTAAACGTT
ATTGTAAAGATAATACTTTATTCTTCGTTGTGGGTACAAAAATCGATAAT
TGTGATTCTATAACTGTCAAAGAGGATTACCCCAAAGAAATGTTGCAATC
GCTACCGATAAAGAtcgaaaatttctatcgaattTCTTCGAAGGAAGGGA
CAAATTTTGATTCCTTTATCGATAATGTAATTGATATTATATTGGCGAAT
CGTGACGTCAATGGAAACGATATTCCTGATGGTGGTAGAGTGGATATTAC
GAAACACTGTGAAAAGAAGTCTTCCTGCGGATGCTCTTGATATATTGTGA
CTTGTTTTTCAGAATCTCAAGAGTAATTGAAATTCATTTCTAATCATCTC
GTTCTTTCGACTTTTaacataccgggtgacccacgaaaaggttcagacgt
ttctcgacgtcttgaggccgaacaaatctCCCAAAGTGCTTAgagtttag
atatttagaaagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009210-exon-sc0000091-1491911889:539883..540683 | TCONS_00009210-exon-sc0000091-1491911889:539883..540683 | Clytia hemisphaerica | exon |
| TCONS_00009210-exon-sc0000091-1510915933:539883..540683 | TCONS_00009210-exon-sc0000091-1510915933:539883..540683 | Clytia hemisphaerica | exon |
| TCONS_00009210-exon-sc0000091-1575043694:539883..540683 | TCONS_00009210-exon-sc0000091-1575043694:539883..540683 | Clytia hemisphaerica | exon |
| TCONS_00009210-exon-sc0000091-1491911889:540979..541595 | TCONS_00009210-exon-sc0000091-1491911889:540979..541595 | Clytia hemisphaerica | exon |
| TCONS_00009210-exon-sc0000091-1510915933:540979..541595 | TCONS_00009210-exon-sc0000091-1510915933:540979..541595 | Clytia hemisphaerica | exon |
| TCONS_00009210-exon-sc0000091-1575043694:540979..541595 | TCONS_00009210-exon-sc0000091-1575043694:540979..541595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:539883..541595 + |
Blast
BLAST of TCONS_00009210 vs. Swiss-Prot (Human)
Match: RAB8B (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 2.513e-23 Identity = 64/196 (32.65%), Postives = 107/196 (54.59%), Query Frame = 1 Query: 655 YQLVLLGDHGAGKSSIFTRFKEDPFKTTF-EDYSFDQTIKEFTRNNRQMQLQLYDTAGMERAGDMTSSYFRTVDGVLLVYSCTDNETLVNIKSRWVENCKRYCKDNTLFFVVGTKIDNCDSITVKEDYPKEMLQSLPIKIENFYRISSKEGTNF-DSFIDNVIDIILA-NRDVN-GNDIPDGGRVDITKHCEKKSS 1230
++L+L+GD G GK+ + RF ED F TTF D I+ + ++++LQ++DTAG ER +T++Y+R G++LVY T+ ++ NIK+ W+ N + + + ++G K D D V ++ +++ IK F S+K N ++F DI+ NR +N N GG V IT++ KK+S
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIK---FLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKKTS 200
The following BLAST results are available for this feature:
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