TCONS_00009209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009209
Unique NameTCONS_00009209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009209 ID=TCONS_00009209|Name=TCONS_00009209|organism=Clytia hemisphaerica|type=transcript|length=911bp
TGGTACTCATGATATGTCATGGGATATACTTTGTTTTGTGTAAACATTTA
ATCTTGTTGAGGTTAGCAATAATTTACTACAGTACCATCAGACAACCATT
GGAACTGAATCATGCCTGTTGACAAGTCATCGGCGACACCAACAAATTAT
CAATTGGTGCTTCTTGGAGATCACGGTGCTGGTAAATCAAGTATTTTCAC
TCGCTTCAAAGAAGATCCCTTCAAAACAACCTTTGAGGATTATTCTTTTG
ATCAAACCATTAAAGAATTTACCAGAAACAACCGCCAAATGCAGCTTCAA
CTTTACGACACAGCTGGAATGGAACGTGCGGGTGATATGACGTCAAGTTA
CTTCAGAACGGTGGACGGTGTATTACTTGTTTACTCGTGCACCGACAATG
AAACGTTAGTTAACATCAAGTCAAGGTGGGTGGAAAATTGTAAACGTTAT
TGTAAAGATAATACTTTATTCTTCGTTGTGGGTACAAAAATCGATAATTG
TGATTCTATAACTGTCAAAGAGGATTACCCCAAAGAAATGTTGCAATCGC
TACCGATAAAGAtcgaaaatttctatcgaattTCTTCGAAGGAAGGGACA
AATTTTGATTCCTTTATCGATAATGTAATTGATATTATATTGGCGAATCG
TGACGTCAATGGAAACGATATTCCTGATGGTGGTAGAGTGGATATTACGA
AACACTGTGAAAAGAAGTCTTCCTGCGGATGCTCTTGATATATTGTGACT
TGTTTTTCAGAATCTCAAGAGTAATTGAAATTCATTTCTAATCATCTCGT
TCTTTCGACTTTTaacataccgggtgacccacgaaaaggttcagacgttt
ctcgacgtcttgaggccgaacaaatctCCCAAAGTGCTTAgagtttagat
atttagaaagt
Run BLAST on NCBI

protein sequence of TCONS_00009209-protein

>TCONS_00009209-protein ID=TCONS_00009209-protein|Name=TCONS_00009209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MPVDKSSATPTNYQLVLLGDHGAGKSSIFTRFKEDPFKTTFEDYSFDQTI
KEFTRNNRQMQLQLYDTAGMERAGDMTSSYFRTVDGVLLVYSCTDNETLV
NIKSRWVENCKRYCKDNTLFFVVGTKIDNCDSITVKEDYPKEMLQSLPIK
IENFYRISSKEGTNFDSFIDNVIDIILANRDVNGNDIPDGGRVDITKHCE
KKSSCGCS
Run BLAST on NCBI

transcript from alignment at sc0000091:539765..541595+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009209 ID=TCONS_00009209|Name=TCONS_00009209|organism=Clytia hemisphaerica|type=transcript|length=1831bp|location=Sequence derived from alignment at sc0000091:539765..541595+ (Clytia hemisphaerica)
TGGTACTCATGATATGTCATGGGATATACTTTGTTTTGTGTAAACATTTA
ATCTTGTTGAGGTATAGTCAGGTATTTTTTAACGTACAACTGTAATGATA
GTACAGGATCGAATTTCATGCGAGGAAAAGTTTCAAACTTCTCAATTCTG
TGGtttttatttgttgttttttgtatcGAAAAAAACTTTGGTTCATTGAT
TACAACATGAAGTTGTTTCAAATGGTTTCAAGAAGTTGCTTCAAAAGATA
AAGCTGACGTGATGTGTTTTGGTTGACTTGGATGTTTTGATGTGTTGCGA
CGGATGGTTAAATTGCCATCTTGCCAGCTTTTCAAGAGTGTGCAAAAATG
GTCACCCCCTCCCGTCATGAGTATCGCCCTTCTTGAAGAACGTATACCTA
ACCCCTAAGAAAGTTATTAAGTCATTTACTCCTccctttatttttcattt
gcaCTCCTCTTTTGTGACTTTCTTCTACTCCCCATTTAGAAAGGGTATTT
ATTTCTTCCTCGTCTATTAATTATTTACCCCTCCTTTTATGAGGCCCTTT
TTTACCCCTCCTCTTTTTGAGAAGCATCTACTCATCTATCTCATTTAGAA
TGGAGGAGGTTCCCTCTATTCTCGTCTTTCCAAGTTAAATTTCTTTACCC
ATACAACGGTCTAGTTGCTACTTTTTACATTTCCAGGTTAGCAATAATTT
ACTACAGTACCATCAGACAACCATTGGAACTGAATCATGCCTGTTGACAA
GTCATCGGCGACACCAACAAATTATCAATTGGTGCTTCTTGGAGATCACG
GTGCTGGTAAATCAAGTATTTTCACTCGCTTCAAAGAAGATCCCTTCAAA
ACAACCTTTGAGGATTATTCTTTTGATCAAACCATTAAAGAATTTACCAG
AAACAACCGCCAAATGCAGGTTTGTGTATGTGTTTTACATTAGTGGCACG
TGGCTGCTATCCAAACTCATGTTTTGAAAGCCGTCGTCTGACAATGACAT
ACCAGTGTCGGGGTATAGAacaaaaaatcgattttttggTTGCGCATGCT
TGGCTTCTTTAAAGTTTTCCTTTAGAcaatgctatcgtccgttagagggA
TTAATAGTAAACACGGGAAAATATATGCGTAGAGTAAAAAAATAGTGAAT
GGGATGGTGTAGTTTTCCTTATAAATAATGTATCAATGACACAATTTCAC
ATGTATTTTTTTAGCTTCAACTTTACGACACAGCTGGAATGGAACGTGCG
GGTGATATGACGTCAAGTTACTTCAGAACGGTGGACGGTGTATTACTTGT
TTACTCGTGCACCGACAATGAAACGTTAGTTAACATCAAGTCAAGGTGGG
TGGAAAATTGTAAACGTTATTGTAAAGATAATACTTTATTCTTCGTTGTG
GGTACAAAAATCGATAATTGTGATTCTATAACTGTCAAAGAGGATTACCC
CAAAGAAATGTTGCAATCGCTACCGATAAAGAtcgaaaatttctatcgaa
ttTCTTCGAAGGAAGGGACAAATTTTGATTCCTTTATCGATAATGTAATT
GATATTATATTGGCGAATCGTGACGTCAATGGAAACGATATTCCTGATGG
TGGTAGAGTGGATATTACGAAACACTGTGAAAAGAAGTCTTCCTGCGGAT
GCTCTTGATATATTGTGACTTGTTTTTCAGAATCTCAAGAGTAATTGAAA
TTCATTTCTAATCATCTCGTTCTTTCGACTTTTaacataccgggtgaccc
acgaaaaggttcagacgtttctcgacgtcttgaggccgaacaaatctCCC
AAAGTGCTTAgagtttagatatttagaaagt

Coding sequence (CDS) from alignment at sc0000091:539765..541595+

>TCONS_00009209 ID=TCONS_00009209|Name=TCONS_00009209|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at sc0000091:539765..541595+ (Clytia hemisphaerica)
ATGCCTGTTGACAAGTCATCGGCGACACCAACAAATTATCAATTGGTGCT
TCTTGGAGATCACGGTGCTGGTAAATCAAGTATTTTCACTCGCTTCAAAG
AAGATCCCTTCAAAACAACCTTTGAGGATTATTCTTTTGATCAAACCATT
AAAGAATTTACCAGAAACAACCGCCAAATGCAGCTTCAACTTTACGACAC
AGCTGGAATGGAACGTGCGGGTGATATGACGTCAAGTTACTTCAGAACGG
TGGACGGTGTATTACTTGTTTACTCGTGCACCGACAATGAAACGTTAGTT
AACATCAAGTCAAGGTGGGTGGAAAATTGTAAACGTTATTGTAAAGATAA
TACTTTATTCTTCGTTGTGGGTACAAAAATCGATAATTGTGATTCTATAA
CTGTCAAAGAGGATTACCCCAAAGAAATGTTGCAATCGCTACCGATAAAG
AtcgaaaatttctatcgaattTCTTCGAAGGAAGGGACAAATTTTGATTC
CTTTATCGATAATGTAATTGATATTATATTGGCGAATCGTGACGTCAATG
GAAACGATATTCCTGATGGTGGTAGAGTGGATATTACGAAACACTGTGAA
AAGAAGTCTTCCTGCGGATGCTCTTGAATGCCTGTTGACAAGTCATCGGC
GACACCAACAAATTATCAATTGGTGCTTCTTGGAGATCACGGTGCTGGTA
AATCAAGTATTTTCACTCGCTTCAAAGAAGATCCCTTCAAAACAACCTTT
GAGGATTATTCTTTTGATCAAACCATTAAAGAATTTACCAGAAACAACCG
CCAAATGCAGCTTCAACTTTACGACACAGCTGGAATGGAACGTGCGGGTG
ATATGACGTCAAGTTACTTCAGAACGGTGGACGGTGTATTACTTGTTTAC
TCGTGCACCGACAATGAAACGTTAGTTAACATCAAGTCAAGGTGGGTGGA
AAATTGTAAACGTTATTGTAAAGATAATACTTTATTCTTCGTTGTGGGTA
CAAAAATCGATAATTGTGATTCTATAACTGTCAAAGAGGATTACCCCAAA
GAAATGTTGCAATCGCTACCGATAAAGAtcgaaaatttctatcgaattTC
TTCGAAGGAAGGGACAAATTTTGATTCCTTTATCGATAATGTAATTGATA
TTATATTGGCGAATCGTGACGTCAATGGAAACGATATTCCTGATGGTGGT
AGAGTGGATATTACGAAACACTGTGAAAAGAAGTCTTCCTGCGGATGCTC
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005171XLOC_005171Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009209-proteinTCONS_00009209-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009209-exon-sc0000091-1491911889:539765..539825TCONS_00009209-exon-sc0000091-1491911889:539765..539825Clytia hemisphaericaexon
TCONS_00009209-exon-sc0000091-1510915933:539765..539825TCONS_00009209-exon-sc0000091-1510915933:539765..539825Clytia hemisphaericaexon
TCONS_00009209-exon-sc0000091-1575043694:539765..539825TCONS_00009209-exon-sc0000091-1575043694:539765..539825Clytia hemisphaericaexon
TCONS_00009209-exon-sc0000091-1491911889:540451..540683TCONS_00009209-exon-sc0000091-1491911889:540451..540683Clytia hemisphaericaexon
TCONS_00009209-exon-sc0000091-1510915933:540451..540683TCONS_00009209-exon-sc0000091-1510915933:540451..540683Clytia hemisphaericaexon
TCONS_00009209-exon-sc0000091-1575043694:540451..540683TCONS_00009209-exon-sc0000091-1575043694:540451..540683Clytia hemisphaericaexon
TCONS_00009209-exon-sc0000091-1491911889:540979..541595TCONS_00009209-exon-sc0000091-1491911889:540979..541595Clytia hemisphaericaexon
TCONS_00009209-exon-sc0000091-1510915933:540979..541595TCONS_00009209-exon-sc0000091-1510915933:540979..541595Clytia hemisphaericaexon
TCONS_00009209-exon-sc0000091-1575043694:540979..541595TCONS_00009209-exon-sc0000091-1575043694:540979..541595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:539765..541595 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.991819	0.81963	0.41417	0.538776	4.7288	2.6845	1.49442	0.949861	1.55281	6.12323	2.12953	1.20651	8.46229	6.8979	5.98845	5.785	3.30067	2.2959	8.0502	8.6791	3.51814	2.3896	2.61005	2.38525	8.67333	9.43566	31.3748	37.3847	9.55977	6.45798
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00009209 vs. Swiss-Prot (Human)
Match: RAB8B (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.696e-24
Identity = 64/196 (32.65%), Postives = 107/196 (54.59%), Query Frame = 1 
Query:  148 YQLVLLGDHGAGKSSIFTRFKEDPFKTTF-EDYSFDQTIKEFTRNNRQMQLQLYDTAGMERAGDMTSSYFRTVDGVLLVYSCTDNETLVNIKSRWVENCKRYCKDNTLFFVVGTKIDNCDSITVKEDYPKEMLQSLPIKIENFYRISSKEGTNF-DSFIDNVIDIILA-NRDVN-GNDIPDGGRVDITKHCEKKSS 723
            ++L+L+GD G GK+ +  RF ED F TTF      D  I+    + ++++LQ++DTAG ER   +T++Y+R   G++LVY  T+ ++  NIK+ W+ N + +   +    ++G K D  D   V ++  +++     IK   F   S+K   N  ++F     DI+   NR +N  N    GG V IT++  KK+S
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIK---FLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKKTS 200
The following BLAST results are available for this feature:
BLAST of TCONS_00009209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB8B4.696e-2432.65Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
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