TCONS_00009208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009208
Unique NameTCONS_00009208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1182

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009208 ID=TCONS_00009208|Name=TCONS_00009208|organism=Clytia hemisphaerica|type=transcript|length=1182bp
tttagaacaaaacataaaaaagtaaaaattgaaaaagaaatacaaagaaa
tacTGTGAGTCATGAAGAAGAAGAATACAGGACAATTTCGAAATACAGTT
TGGGATCCACTCTTGATTACGTCACAAATCCTTTCTGTTCAAAGTGTGTT
TTATGCTTCTTATGGCCTGTTGACCTTCATTGTGTGCTCAGTGGCTGGAC
TACCAATTTCTGTTGGCCAAATGTTTGATTCAAAGATCATTGGTGCAGTC
TCATATGACGGCAAATTACAAATCATGGTTTTTCTCATCAATTCACTTAT
ATGTGCTTTATCAATATGGTTCATTGTCCAAAGAGCAAAACAAtGCTTAG
ATTTTACGGTAACGGCGCATTTTGTGCATTTCCTGTTATGTTGTTTCATT
GTTGGCTTTCCAAAATCTGGCATCTGGTGGGTCATGGTGATGGTCAGTGT
CATCATCACAGCCCTGGTAAGTGAATACCTTTGCATGAGGTACGAGATGA
AAGCTATCCCTGTCACCGTCTCCGGTGTATCATGATGAACAAGTCGAGTG
TCAATTTCTTGCTGGACGGAAGAAGGTGCAATGGCATGAAGATTTAGATA
TTTCGACCTCGAAATTTGGACAGTGGTTTTCTATGGCGAACAGTTGAAAT
CTTTCTACTGAGCAGATTATATCTGACTTTCAAGTTGTCATAAACGACAG
TATACAGATGCTACGATACATTAATGAATTAGATAGGCGAGTTCTCATGC
TTCAATTTCGAATGGATATTTCATCGTGGAATTTACTTTTGCACATCCCG
TTTTGTCATTGGGATGAACTTTAAAGAATCATTACGTCGTAGATGTCAAC
ATAATATTGCTCTAAATTACAGTATTATGCATGATGATTTCGATATTTAT
TTTAGTATTTTGTAGATCTGTTTTAGCCCTAAGCACTTATAGTTATTTTT
ATGTGCTATAGAAAAATGAATTATTTATTTTGGAAGTCCTGGTGACATAA
TATTGTTTATATTCGAATTTCTAAGAATTTCTATTGTATGAGGTttataa
taattaaaataattcaataattATTAGTCTTTTTAAGAGAGAGACTTCTG
ATCTATTTAGCTATTTTCcgatttctttgttcttttcacaaaaatctgct
tagAATGACAGAATTGACTGTGTCATCGTCAT
Run BLAST on NCBI

protein sequence of TCONS_00009208-protein

>TCONS_00009208-protein ID=TCONS_00009208-protein|Name=TCONS_00009208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MKKKNTGQFRNTVWDPLLITSQILSVQSVFYASYGLLTFIVCSVAGLPIS
VGQMFDSKIIGAVSYDGKLQIMVFLINSLICALSIWFIVQRAKQCLDFTV
TAHFVHFLLCCFIVGFPKSGIWWVMVMVSVIITALVSEYLCMRYEMKAIP
VTVSGVS
Run BLAST on NCBI

transcript from alignment at sc0000091:536549..539629+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009208 ID=TCONS_00009208|Name=TCONS_00009208|organism=Clytia hemisphaerica|type=transcript|length=3081bp|location=Sequence derived from alignment at sc0000091:536549..539629+ (Clytia hemisphaerica)
tttagaacaaaacataaaaaagtaaaaattgaaaaagaaatacaaagaaa
tacTGTGAGTCATGAAGAAGAAGAATACAGGACAATTTCGAAATACAGTT
TGGGATCCACTCTTGATTACGTCACAAATCCTTTCTGTTCAAAGTGTGTT
TTATGCTTCTTATGGCCTGTTGACCTTCATTGTGTGCTCAGTGGCTGGAC
TACCAATTTCTGTTGGCCAAATGTTTGATTCAAAGGTAAAGAGATTATAT
CaaagaactttttttctttatggGGTAAGGAAAAGTGCAATTACATTTTA
ATATAAATGTTATTTACAATAACAGACTCTCTTGTTCTAGTTAGTATTGA
GATTCTTTAGACCCTAAATATATTGTATATTTTGAATGATATTGGATGTC
TAAAACATTCAGCTTTCATGATACTAAATCACTCTGTGAAAGAATCAATG
TTTTAGTTTGCGTGTTTCTTTAATTGTTATCTATCATATCATTGTTTACA
TAAATTACAAGACCAATAAGGTCAATTCTATCCATCTAAGGTCTATCCAA
TCAGAAAGTATAAATAAACCCATCAACCCTAAACGCCATGAAAGGGCTCG
AGTCAAGTTAAGTCAAAGAGTAATGACGTTAACACTCTTTGTGTTTGAAA
AAATCAATGCAACGATTTCAAACAATATTAATGTCTACCTTTCTTGGTAG
ACTCGGTAAACCCAGTCGCCGCACGTGCTTCAAGGGTCGATATAAGTGCT
TGATTTTAAACGAGATCAGTTTAAAGTGTCTCAAAATGACTATAATCAAC
AAAGATGGATTTCTCCCAATTCACCGTCTCTAACCAGTCAGTAGCcaaga
attcacttccagcTCTACCCAGTCGCAATTGAGTCCTCGGGTTCCGCATG
GATTcgtagctcaatggtagagcaaatgcccgcgaatggcatggttgtga
gttcgagtctcgccggatccgttggttttccaacagttccggtggctggt
cagaagacaacatgagagcgactgtattcacttcattgtaatacataagg
GCAATGTTCATAATTAACAAATCTCGTCTTTTTCAGATCATTGGTGCAGT
CTCATATGACGGCAAATTACAAATCATGGTTTTTCTCATCAATTCACTTA
TATGGTTAGTATGAATATCGAAAATCGTCTTTTAagcacacccctgtgtc
acagacccactgggaccctagctgcactggaaaatttggcaaaaatttcg
tccccggtgggaaaatactcTGGAATTTCAGCGCTACTaggaaaatgact
ttgatttcatccccattcgaaattcgatgtttaaaaattgtactccaaaa
ccgggatggattttttaatcttggaacaatagaacttctatccccatcgg
gatttcaataggaatttttatccccactgaggaaaaaagttccagtgGGG
ATGTGAGACAGCGGTCTTTAAGCCTTCTTCTCTGAAATATCATTGTACTG
CTAATGAATAAAGGAATGCACAATAAGGGCTTTTAACTAATACAATATTT
CACATTTCTTTTAACTTTGCATAGTGCTTTATCAATATGGTTCATTGTCC
AAAGAGCAAAACAAGTAAGCAATTTTCACTCAGTTcaaatatttcatgat
attgaaatttctctaaaataaaTGGAAATCATGTATTTTCATCAATCTAA
TTAATAGCTATTTAAAGGACATTATTTAACATCTCCTGACATAATTTTGT
TTACAaagcatttttcaacaaaagaaagaacagcTGCCCCCCCCCTCCCC
GCGCGTGcccaaattttaagaaattctattttttatttagcCTATAcaag
acgtcacccgcgttttttctacgcagtaACGTCTATTCTGCTTTGTGACT
TTTTCGAGTTTTTGGAGCCGAGGTTTTCGGAGATTTTTTGAAGTCATTTT
AAACTTTCGAAACTGCTCCTGCAGTAgcgtaaaaattgaatttgcgtcaa
aacacttgaaagacttatatttttcaaaaatcatcaaagtggaactcacc
aagaaacggaatgaaaaatcccggtttttggtgacgTGTTTGCTATTGTT
TATTCTGCTTTTTCAGCATAGAGGCTCTATAACATAAGAAAGGATATCTT
TAAACAAACATCATAACTAACTCTAATAACTAACTCTAATAACTaattaa
aaaagcaatttaaagtgaacttttcttatgttttattttcagtGCTTAGA
TTTTACGGTAACGGCGCATTTTGTGCATTTCCTGTTATGTTGTTTCATTG
TTGGCTTTCCAAAATCTGGCATCTGGTGGGTCATGGTGATGGTCAGTGTC
ATCATCACAGCCCTGGTAAGTGAATACCTTTGCATGAGGTACGAGATGAA
AGCTATCCCTGTCACCGTCTCCGGTGTATCATGATGAACAAGTCGAGTGT
CAATTTCTTGCTGGACGGAAGAAGGTGCAATGGCATGAAGATTTAGATAT
TTCGACCTCGAAATTTGGACAGTGGTTTTCTATGGCGAACAGTTGAAATC
TTTCTACTGAGCAGATTATATCTGACTTTCAAGTTGTCATAAACGACAGT
ATACAGATGCTACGATACATTAATGAATTAGATAGGCGAGTTCTCATGCT
TCAATTTCGAATGGATATTTCATCGTGGAATTTACTTTTGCACATCCCGT
TTTGTCATTGGGATGAACTTTAAAGAATCATTACGTCGTAGATGTCAACA
TAATATTGCTCTAAATTACAGTATTATGCATGATGATTTCGATATTTATT
TTAGTATTTTGTAGATCTGTTTTAGCCCTAAGCACTTATAGTTATTTTTA
TGTGCTATAGAAAAATGAATTATTTATTTTGGAAGTCCTGGTGACATAAT
ATTGTTTATATTCGAATTTCTAAGAATTTCTATTGTATGAGGTttataat
aattaaaataattcaataattATTAGTCTTTTTAAGAGAGAGACTTCTGA
TCTATTTAGCTATTTTCcgatttctttgttcttttcacaaaaatctgctt
agAATGACAGAATTGACTGTGTCATCGTCAT

Coding sequence (CDS) from alignment at sc0000091:536549..539629+

>TCONS_00009208 ID=TCONS_00009208|Name=TCONS_00009208|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at sc0000091:536549..539629+ (Clytia hemisphaerica)
ATGAAGAAGAAGAATACAGGACAATTTCGAAATACAGTTTGGGATCCACT
CTTGATTACGTCACAAATCCTTTCTGTTCAAAGTGTGTTTTATGCTTCTT
ATGGCCTGTTGACCTTCATTGTGTGCTCAGTGGCTGGACTACCAATTTCT
GTTGGCCAAATGTTTGATTCAAAGATCATTGGTGCAGTCTCATATGACGG
CAAATTACAAATCATGGTTTTTCTCATCAATTCACTTATATGTGCTTTAT
CAATATGGTTCATTGTCCAAAGAGCAAAACAAtGCTTAGATTTTACGGTA
ACGGCGCATTTTGTGCATTTCCTGTTATGTTGTTTCATTGTTGGCTTTCC
AAAATCTGGCATCTGGTGGGTCATGGTGATGGTCAGTGTCATCATCACAG
CCCTGGTAAGTGAATACCTTTGCATGAGGTACGAGATGAAAGCTATCCCT
GTCACCGTCTCCGGTGTATCATGAATGAAGAAGAAGAATACAGGACAATT
TCGAAATACAGTTTGGGATCCACTCTTGATTACGTCACAAATCCTTTCTG
TTCAAAGTGTGTTTTATGCTTCTTATGGCCTGTTGACCTTCATTGTGTGC
TCAGTGGCTGGACTACCAATTTCTGTTGGCCAAATGTTTGATTCAAAGAT
CATTGGTGCAGTCTCATATGACGGCAAATTACAAATCATGGTTTTTCTCA
TCAATTCACTTATATGTGCTTTATCAATATGGTTCATTGTCCAAAGAGCA
AAACAAtGCTTAGATTTTACGGTAACGGCGCATTTTGTGCATTTCCTGTT
ATGTTGTTTCATTGTTGGCTTTCCAAAATCTGGCATCTGGTGGGTCATGG
TGATGGTCAGTGTCATCATCACAGCCCTGGTAAGTGAATACCTTTGCATG
AGGTACGAGATGAAAGCTATCCCTGTCACCGTCTCCGGTGTATCATGAAT
GAAGAAGAAGAATACAGGACAATTTCGAAATACAGTTTGGGATCCACTCT
TGATTACGTCACAAATCCTTTCTGTTCAAAGTGTGTTTTATGCTTCTTAT
GGCCTGTTGACCTTCATTGTGTGCTCAGTGGCTGGACTACCAATTTCTGT
TGGCCAAATGTTTGATTCAAAGATCATTGGTGCAGTCTCATATGACGGCA
AATTACAAATCATGGTTTTTCTCATCAATTCACTTATATGTGCTTTATCA
ATATGGTTCATTGTCCAAAGAGCAAAACAAtGCTTAGATTTTACGGTAAC
GGCGCATTTTGTGCATTTCCTGTTATGTTGTTTCATTGTTGGCTTTCCAA
AATCTGGCATCTGGTGGGTCATGGTGATGGTCAGTGTCATCATCACAGCC
CTGGTAAGTGAATACCTTTGCATGAGGTACGAGATGAAAGCTATCCCTGT
CACCGTCTCCGGTGTATCATGAATGAAGAAGAAGAATACAGGACAATTTC
GAAATACAGTTTGGGATCCACTCTTGATTACGTCACAAATCCTTTCTGTT
CAAAGTGTGTTTTATGCTTCTTATGGCCTGTTGACCTTCATTGTGTGCTC
AGTGGCTGGACTACCAATTTCTGTTGGCCAAATGTTTGATTCAAAGATCA
TTGGTGCAGTCTCATATGACGGCAAATTACAAATCATGGTTTTTCTCATC
AATTCACTTATATGTGCTTTATCAATATGGTTCATTGTCCAAAGAGCAAA
ACAAtGCTTAGATTTTACGGTAACGGCGCATTTTGTGCATTTCCTGTTAT
GTTGTTTCATTGTTGGCTTTCCAAAATCTGGCATCTGGTGGGTCATGGTG
ATGGTCAGTGTCATCATCACAGCCCTGGTAAGTGAATACCTTTGCATGAG
GTACGAGATGAAAGCTATCCCTGTCACCGTCTCCGGTGTATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005170XLOC_005170Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009208-exon-sc0000091-1491911889:536549..536783TCONS_00009208-exon-sc0000091-1491911889:536549..536783Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1510915933:536549..536783TCONS_00009208-exon-sc0000091-1510915933:536549..536783Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1575043694:536549..536783TCONS_00009208-exon-sc0000091-1575043694:536549..536783Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1491911889:537635..537702TCONS_00009208-exon-sc0000091-1491911889:537635..537702Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1510915933:537635..537702TCONS_00009208-exon-sc0000091-1510915933:537635..537702Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1575043694:537635..537702TCONS_00009208-exon-sc0000091-1575043694:537635..537702Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1491911889:538123..538162TCONS_00009208-exon-sc0000091-1491911889:538123..538162Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1510915933:538123..538162TCONS_00009208-exon-sc0000091-1510915933:538123..538162Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1575043694:538123..538162TCONS_00009208-exon-sc0000091-1575043694:538123..538162Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1491911889:538791..539629TCONS_00009208-exon-sc0000091-1491911889:538791..539629Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1510915933:538791..539629TCONS_00009208-exon-sc0000091-1510915933:538791..539629Clytia hemisphaericaexon
TCONS_00009208-exon-sc0000091-1575043694:538791..539629TCONS_00009208-exon-sc0000091-1575043694:538791..539629Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009208-proteinTCONS_00009208-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:536549..539629 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.1846	18.0627	4.04587	1.61561	7.22819	4.6627	5.85974	5.96857	6.08375	7.15512	8.0901	4.49247	4.94698	4.73454	4.61709	5.79917	5.80288	6.87359	5.38766	4.58325	6.94499	6.29357	25.8784	23.3752	4.50201	6.39375	9.44942	8.48394	16.9166	17.2765
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019185Integral_membrane_SYS1-rel
Blast
[Close]
BLAST of TCONS_00009208 vs. Swiss-Prot (Human)
Match: SYS1 (Protein SYS1 homolog OS=Homo sapiens GN=SYS1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.450e-35
Identity = 69/146 (47.26%), Postives = 98/146 (67.12%), Query Frame = 2 
Query:   77 TGQFRNTVWDPLLITSQILSVQSVFYASYGLLTFIVCSVAGLPISVGQMFDSKIIGAVSYDGKLQIMVFLINSLICALSIWFIVQRAKQCLDFTVTAHFVHFLLCCFIVG-FPKSGXXXXXXXXXXXXTALVSEYLCMRYEMKAIP 511
             GQFR+ VWDPLLI SQI+ +Q+V+Y S GL   +V  +     S+ QMFD++I+G  +  G+L +M F++N+L CAL + + ++R KQCLDFTVT HF H L C F    FP +  WW++  V + + A++ EYLCMR E+K IP
Sbjct:    2 AGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRTELKEIP 147
The following BLAST results are available for this feature:
BLAST of TCONS_00009208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYS12.450e-3547.26Protein SYS1 homolog OS=Homo sapiens GN=SYS1 PE=1 ... [more]
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