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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009174 ID=TCONS_00009174|Name=TCONS_00009174|organism=Clytia hemisphaerica|type=transcript|length=1493bp
gctgtaagaatattttaggatgattttcccaaaaaagttaagaatatcca
tgatgaaatggatttacaccattcttataaaaaaaaagcgtgtaatggcA
GAAACCAGGGTCTTTTCGTAGAAgatattacgtcatgaatatcatgaatt
aaattCTTCTCTCAAAAATGAACTTACAAATGATAAAACAATCAAAGCCT
ACAATCTTTCTGATTAAAATGTTTTGTGGCAATGAGTTTTCTTCGTTACA
ATCTTTGGTATATttgattcatttcaaaattccaaaaaCAATTGCGGATC
GTTTATCACcgatatgaaaatcttttgaaacaTTAACAACACGACAATAT
TCAATACAAGCGTTCTGACTCTTTTGTCCAAACTTTAAATGCTTCCCAAA
ATCCTTTGTATGGAGAAGAAAGAAAGTTGCAGTTTCCCATGCAATTTTCA
AATCTTCAACCAGAAAATCATCGGATTCTTCTTTGTATACGTAACTGTTG
TCTTTTCTGTTCACGAAATCCAGATATTCATAGTCCTTATTGAATTCCTT
TCTCATGAACAAATATTTATCCTTCTTGAACACTTCTTTATTCCCCATCA
TCGCGGAAATCACTTTGTACCAGTCACCATAAGAAGGGTACAAAAGTGAA
GATTTATTTCCTTCGTGAAAATATTCTGCTCCCCAAACCAAACGTTCGAT
CGTCGTCATATTTTCCTCAACTTTATCCGCAGCTTGGTTTTGCTTTTGAA
TGacccttttcaaattttcaatttctctgTTTAAATGTTGGACAGTTGCT
TCTTTCTCTATCCTTTCTTTCTCCATCTCGCTCAATTTTGTCTCCGTTTg
taacattttgattttgtgttcattttccaaatctttcattttcattttcc
attcatttttcaaatctttcattttcattttccattcattttcttttgca
TCAGTTTCCTTTTCTTGTTCTTTCTTGTACAGAACCATTTCGTGCTCTTT
GGCTAGTAATTGTTTCTCCTTTTCAACTAACTTATTTTGCAGTTCGTCTT
TCTGTTTTTGGAGTTGTTGATCAGCTTGAATTTGACTTGATTGAGATTCA
CGAGAATTCTTTAACTTGAACATCTCAAATTGATGAGACaaagtttgaat
ttctttttctagctgcatgattttcaacgttttctcATTTTCAGATTCCA
GTTGTTGAATCTTAAATTCCATTTTGAGTTTCTCAATCTctttttgatgt
tcttttttcagttTCACAATCTCTCCACTATCCATTTCCACCCTTGGGTT
TCTACCGACAGCACTGTGTGAAATTTCTTTTATCTTCAGGATTCATTTTC
TCTTAAACAGCATCAACAAACATACAGAGACTCAGACATAAACAAGGACG
AATAAAAACTCAATGCTTCAAAAACGCAAGTAGTTGAGTTTATTTAAATC
ATCTCATATCGCCCGAACTGTTTTTAAATAACATCAAATTATC Run BLAST on NCBI protein sequence of TCONS_00009174-protein >TCONS_00009174-protein ID=TCONS_00009174-protein|Name=TCONS_00009174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MDSGEIVKLKKEHQKEIEKLKMEFKIQQLESENEKTLKIMQLEKEIQTLS
HQFEMFKLKNSRESQSSQIQADQQLQKQKDELQNKLVEKEKQLLAKEHEM
VLYKKEQEKETDAKENEWKMKMKDLKNEWKMKMKDLENEHKIKMLQTETK
LSEMEKERIEKEATVQHLNREIENLKRVIQKQNQAADKVEENMTTIERLV
WGAEYFHEGNKSSLLYPSYGDWYKVISAMMGNKEVFKKDKYLFMRKEFNK
DYEYLDFVNRKDNSYVYKEESDDFLVEDLKIAWETATFFLLHTKDFGKHL
KFGQKSQNACIEYCRVVNVSKDFHIGDKRSAIVFGILK Run BLAST on NCBI transcript from alignment at sc0000090:542729..544221 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009174 ID=TCONS_00009174|Name=TCONS_00009174|organism=Clytia hemisphaerica|type=transcript|length=1493bp|location=Sequence derived from alignment at sc0000090:542729..544221 (Clytia hemisphaerica)
GATAATTTGATGTTATTTAAAAACAGTTCGGGCGATATGAGATGATTTAA
ATAAACTCAACTACTTGCGTTTTTGAAGCATTGAGTTTTTATTCGTCCTT
GTTTATGTCTGAGTCTCTGTATGTTTGTTGATGCTGTTTAAGAGAAAATG
AATCCTGAAGATAAAAGAAATTTCACACAGTGCTGTCGGTAGAAACCCAA
GGGTGGAAATGGATAGTGGAGAGATTGTGAaactgaaaaaagaacatcaa
aaagAGATTGAGAAACTCAAAATGGAATTTAAGATTCAACAACTGGAATC
TGAAAATgagaaaacgttgaaaatcatgcagctagaaaaagaaattcaaa
ctttGTCTCATCAATTTGAGATGTTCAAGTTAAAGAATTCTCGTGAATCT
CAATCAAGTCAAATTCAAGCTGATCAACAACTCCAAAAACAGAAAGACGA
ACTGCAAAATAAGTTAGTTGAAAAGGAGAAACAATTACTAGCCAAAGAGC
ACGAAATGGTTCTGTACAAGAAAGAACAAGAAAAGGAAACTGAtgcaaaa
gaaaatgaatggaaaatgaaaatgaaagatttgaaaaatgaatggaaaat
gaaaatgaaagatttggaaaatgaacacaaaatcaaaatgttacAAACGG
AGACAAAATTGAGCGAGATGGAGAAAGAAAGGATAGAGAAAGAAGCAACT
GTCCAACATTTAAAcagagaaattgaaaatttgaaaagggtCATTCAAAA
GCAAAACCAAGCTGCGGATAAAGTTGAGGAAAATATGACGACGATCGAAC
GTTTGGTTTGGGGAGCAGAATATTTTCACGAAGGAAATAAATCTTCACTT
TTGTACCCTTCTTATGGTGACTGGTACAAAGTGATTTCCGCGATGATGGG
GAATAAAGAAGTGTTCAAGAAGGATAAATATTTGTTCATGAGAAAGGAAT
TCAATAAGGACTATGAATATCTGGATTTCGTGAACAGAAAAGACAACAGT
TACGTATACAAAGAAGAATCCGATGATTTTCTGGTTGAAGATTTGAAAAT
TGCATGGGAAACTGCAACTTTCTTTCTTCTCCATACAAAGGATTTTGGGA
AGCATTTAAAGTTTGGACAAAAGAGTCAGAACGCTTGTATTGAATATTGT
CGTGTTGTTAAtgtttcaaaagattttcatatcgGTGATAAACGATCCGC
AATTGtttttggaattttgaaatgaatcaaATATACCAAAGATTGTAACG
AAGAAAACTCATTGCCACAAAACATTTTAATCAGAAAGATTGTAGGCTTT
GATTGTTTTATCATTTGTAAGTTCATTTTTGAGAGAAGaatttaattcat
gatattcatgacgtaatatcTTCTACGAAAAGACCCTGGTTTCTgccatt
acacgctttttttttataagaatggtgtaaatccatttcatcatggatat
tcttaacttttttgggaaaatcatcctaaaatattcttacagc Coding sequence (CDS) from alignment at sc0000090:542729..544221 >TCONS_00009174 ID=TCONS_00009174|Name=TCONS_00009174|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at sc0000090:542729..544221 (Clytia hemisphaerica)
ATGGATAGTGGAGAGATTGTGAaactgaaaaaagaacatcaaaaagAGAT
TGAGAAACTCAAAATGGAATTTAAGATTCAACAACTGGAATCTGAAAATg
agaaaacgttgaaaatcatgcagctagaaaaagaaattcaaactttGTCT
CATCAATTTGAGATGTTCAAGTTAAAGAATTCTCGTGAATCTCAATCAAG
TCAAATTCAAGCTGATCAACAACTCCAAAAACAGAAAGACGAACTGCAAA
ATAAGTTAGTTGAAAAGGAGAAACAATTACTAGCCAAAGAGCACGAAATG
GTTCTGTACAAGAAAGAACAAGAAAAGGAAACTGAtgcaaaagaaaatga
atggaaaatgaaaatgaaagatttgaaaaatgaatggaaaatgaaaatga
aagatttggaaaatgaacacaaaatcaaaatgttacAAACGGAGACAAAA
TTGAGCGAGATGGAGAAAGAAAGGATAGAGAAAGAAGCAACTGTCCAACA
TTTAAAcagagaaattgaaaatttgaaaagggtCATTCAAAAGCAAAACC
AAGCTGCGGATAAAGTTGAGGAAAATATGACGACGATCGAACGTTTGGTT
TGGGGAGCAGAATATTTTCACGAAGGAAATAAATCTTCACTTTTGTACCC
TTCTTATGGTGACTGGTACAAAGTGATTTCCGCGATGATGGGGAATAAAG
AAGTGTTCAAGAAGGATAAATATTTGTTCATGAGAAAGGAATTCAATAAG
GACTATGAATATCTGGATTTCGTGAACAGAAAAGACAACAGTTACGTATA
CAAAGAAGAATCCGATGATTTTCTGGTTGAAGATTTGAAAATTGCATGGG
AAACTGCAACTTTCTTTCTTCTCCATACAAAGGATTTTGGGAAGCATTTA
AAGTTTGGACAAAAGAGTCAGAACGCTTGTATTGAATATTGTCGTGTTGT
TAAtgtttcaaaagattttcatatcgGTGATAAACGATCCGCAATTGttt
ttggaattttgaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009174-exon-sc0000090-1491911889:542729..544221 | TCONS_00009174-exon-sc0000090-1491911889:542729..544221 | Clytia hemisphaerica | exon |
| TCONS_00009174-exon-sc0000090-1510915933:542729..544221 | TCONS_00009174-exon-sc0000090-1510915933:542729..544221 | Clytia hemisphaerica | exon |
| TCONS_00009174-exon-sc0000090-1575043694:542729..544221 | TCONS_00009174-exon-sc0000090-1575043694:542729..544221 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:542729..544221 . |
Blast
The following BLAST results are available for this feature:
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