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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009165 ID=TCONS_00009165|Name=TCONS_00009165|organism=Clytia hemisphaerica|type=transcript|length=1544bp
GGTAGGATCAAACTTGTGGATTTTGAGCGATTCAATTAGCCAGTCGTGAG
GGATGGAGTCAAATGCCTTCTTGTAGTCAATCCACGCAGTGCTGATATTG
CGGCATTTCTTGACGGCGTCTGACATCACCATTGCATTGACTGCCAGTTG
ATCGATGGTACCGTAGGTTTTGTTCGAGCATCCTTTTTGCTCGTCCGGGA
CCAGATGGTTTTGGTCGATGTGGTTCTTCATCCGGTTCGTTATAATGCTC
GTCATGATTTTGTATATGATTGGCAGGCATGTGATGGGTCGATAGTTGGC
AGGGTTTCTGGTCTCGGCTTTCTTCGGAACAAGGGTTGTACGTCCAGTTG
TCAGCCATTGAGGTGTATCGTTGGGATTGTTGATAGTTTGGTGGAGTATG
TCTGCTATCTTTGGGTGTAGGTTAGTCAAGTAGCACCACCAGAAGTTATG
GATTTTGTCTATGCCTGGGCTTTTCCAGTTCTGGAATTTGGAAGTTGCTG
ATTTAACCTCTTCACTCGTAATGGGTTGATATTCGGATTCGACAATCTGT
TCGTTTACGTCATTTGTGTATTCGTCGAGCCAATACGCATCTTGATTGTA
ATGTTGCTCGTTGTTAAATATTGGCTTCCAAAACGAGTTGATGTCTTGCT
CTGTTGGAGGTTCGCTGATGTGTATTTTGTTATCGCGCACTTCGTCGTAG
AACTTGCCCGGATCATTTTCAAACGTGTTGTTGTGGTGGTATTGCTTTTC
ACGTTTGATGAATCGTTTTAGACGGTTGTTGAGCGCCATCAAACGTTGTT
TCAAGGTTTCTAGGATTTGGATTCGCGATTGTTCGTCTTGTATGCTGTAT
TTGATTTTCATACTGTTGTTGTTTCGTTTGATTTTTGACGATGGATCAAC
GATTGACATTTGCTCGATTTTGTTGATGTCGGTGCGGAGATTGTCGATGC
GAACTTTCATCTGGTGCTGCCAGTTGCTCTTTTTCGTTTGGCGCCGATCT
TGTTTTCTTACCAGACATTGTTTTTCGAGTTGCGCAATTTTGATAGAAAG
GAAGGCACACCCATAAGTGACGTCATTTAGTTGATTGACGTCAGATATGT
CGGTTAGCAATGGCATGCCTTCAAGGGCTTTGTTGAttttttgcaaagct
tttttaAGTTCAAATTCCTGTTTTTTCCCCGGCTTTCGAAAGGTATAACG
GTCCTCAAAAGGTGTAATATTGGCTATAGCATACATCCGAGATATCATAG
TTCTTACTCTGTCAATTTCGTCTTGGTTTTCGTTCTCTATATGTTCTGCA
AGCGGTTCAACGTTCGGTTGGATGGCGGGTGGTGGAAGTGGCGGTGGTGG
TAGATTCTCTTCCGTTTCGGCTGGTTGGTCTGGTTGATTGGTTTGGTTTT
CTTCTTGATTTGGTTGGTAGACTGGTTGATGTCGTTCGTCATTGATTTCG
GACTGAATGGTTCGTCTCATATCGTCAACTTCGATCTCCGTCAGCCAGCT
ACCTCTTGTGTTTTCTCTTGTGTTGATCTTTTTTTCTATCTGcc Run BLAST on NCBI protein sequence of TCONS_00009165-protein >TCONS_00009165-protein ID=TCONS_00009165-protein|Name=TCONS_00009165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
QIEKKINTRENTRGSWLTEIEVDDMRRTIQSEINDERHQPVYQPNQEENQ
TNQPDQPAETEENLPPPPLPPPAIQPNVEPLAEHIENENQDEIDRVRTMI
SRMYAIANITPFEDRYTFRKPGKKQEFELKKALQKINKALEGMPLLTDIS
DVNQLNDVTYGCAFLSIKIAQLEKQCLVRKQDRRQTKKSNWQHQMKVRID
NLRTDINKIEQMSIVDPSSKIKRNNNSMKIKYSIQDEQSRIQILETLKQR
LMALNNRLKRFIKREKQYHHNNTFENDPGKFYDEVRDNKIHISEPPTEQD
INSFWKPIFNNEQHYNQDAYWLDEYTNDVNEQIVESEYQPITSEEVKSAT
SKFQNWKSPGIDKIHNFWWCYLTNLHPKIADILHQTINNPNDTPQWLTTG
RTTLVPKKAETRNPANYRPITCLPIIYKIMTSIITNRMKNHIDQNHLVPD
EQKGCSNKTYGTIDQLAVNAMVMSDAVKKCRNISTAWIDYKKAFDSIPHD
WLIESLKIHKFDPT Run BLAST on NCBI transcript from alignment at sc0000090:173890..175433 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009165 ID=TCONS_00009165|Name=TCONS_00009165|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0000090:173890..175433 (Clytia hemisphaerica)
ggCAGATAGAAAAAAAGATCAACACAAGAGAAAACACAAGAGGTAGCTGG
CTGACGGAGATCGAAGTTGACGATATGAGACGAACCATTCAGTCCGAAAT
CAATGACGAACGACATCAACCAGTCTACCAACCAAATCAAGAAGAAAACC
AAACCAATCAACCAGACCAACCAGCCGAAACGGAAGAGAATCTACCACCA
CCGCCACTTCCACCACCCGCCATCCAACCGAACGTTGAACCGCTTGCAGA
ACATATAGAGAACGAAAACCAAGACGAAATTGACAGAGTAAGAACTATGA
TATCTCGGATGTATGCTATAGCCAATATTACACCTTTTGAGGACCGTTAT
ACCTTTCGAAAGCCGGGGAAAAAACAGGAATTTGAACTtaaaaaagcttt
gcaaaaaaTCAACAAAGCCCTTGAAGGCATGCCATTGCTAACCGACATAT
CTGACGTCAATCAACTAAATGACGTCACTTATGGGTGTGCCTTCCTTTCT
ATCAAAATTGCGCAACTCGAAAAACAATGTCTGGTAAGAAAACAAGATCG
GCGCCAAACGAAAAAGAGCAACTGGCAGCACCAGATGAAAGTTCGCATCG
ACAATCTCCGCACCGACATCAACAAAATCGAGCAAATGTCAATCGTTGAT
CCATCGTCAAAAATCAAACGAAACAACAACAGTATGAAAATCAAATACAG
CATACAAGACGAACAATCGCGAATCCAAATCCTAGAAACCTTGAAACAAC
GTTTGATGGCGCTCAACAACCGTCTAAAACGATTCATCAAACGTGAAAAG
CAATACCACCACAACAACACGTTTGAAAATGATCCGGGCAAGTTCTACGA
CGAAGTGCGCGATAACAAAATACACATCAGCGAACCTCCAACAGAGCAAG
ACATCAACTCGTTTTGGAAGCCAATATTTAACAACGAGCAACATTACAAT
CAAGATGCGTATTGGCTCGACGAATACACAAATGACGTAAACGAACAGAT
TGTCGAATCCGAATATCAACCCATTACGAGTGAAGAGGTTAAATCAGCAA
CTTCCAAATTCCAGAACTGGAAAAGCCCAGGCATAGACAAAATCCATAAC
TTCTGGTGGTGCTACTTGACTAACCTACACCCAAAGATAGCAGACATACT
CCACCAAACTATCAACAATCCCAACGATACACCTCAATGGCTGACAACTG
GACGTACAACCCTTGTTCCGAAGAAAGCCGAGACCAGAAACCCTGCCAAC
TATCGACCCATCACATGCCTGCCAATCATATACAAAATCATGACGAGCAT
TATAACGAACCGGATGAAGAACCACATCGACCAAAACCATCTGGTCCCGG
ACGAGCAAAAAGGATGCTCGAACAAAACCTACGGTACCATCGATCAACTG
GCAGTCAATGCAATGGTGATGTCAGACGCCGTCAAGAAATGCCGCAATAT
CAGCACTGCGTGGATTGACTACAAGAAGGCATTTGACTCCATCCCTCACG
ACTGGCTAATTGAATCGCTCAAAATCCACAAGTTTGATCCTACC Coding sequence (CDS) from alignment at sc0000090:173890..175433 >TCONS_00009165 ID=TCONS_00009165|Name=TCONS_00009165|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at sc0000090:173890..175433 (Clytia hemisphaerica)
CAGATAGAAAAAAAGATCAACACAAGAGAAAACACAAGAGGTAGCTGGCT
GACGGAGATCGAAGTTGACGATATGAGACGAACCATTCAGTCCGAAATCA
ATGACGAACGACATCAACCAGTCTACCAACCAAATCAAGAAGAAAACCAA
ACCAATCAACCAGACCAACCAGCCGAAACGGAAGAGAATCTACCACCACC
GCCACTTCCACCACCCGCCATCCAACCGAACGTTGAACCGCTTGCAGAAC
ATATAGAGAACGAAAACCAAGACGAAATTGACAGAGTAAGAACTATGATA
TCTCGGATGTATGCTATAGCCAATATTACACCTTTTGAGGACCGTTATAC
CTTTCGAAAGCCGGGGAAAAAACAGGAATTTGAACTtaaaaaagctttgc
aaaaaaTCAACAAAGCCCTTGAAGGCATGCCATTGCTAACCGACATATCT
GACGTCAATCAACTAAATGACGTCACTTATGGGTGTGCCTTCCTTTCTAT
CAAAATTGCGCAACTCGAAAAACAATGTCTGGTAAGAAAACAAGATCGGC
GCCAAACGAAAAAGAGCAACTGGCAGCACCAGATGAAAGTTCGCATCGAC
AATCTCCGCACCGACATCAACAAAATCGAGCAAATGTCAATCGTTGATCC
ATCGTCAAAAATCAAACGAAACAACAACAGTATGAAAATCAAATACAGCA
TACAAGACGAACAATCGCGAATCCAAATCCTAGAAACCTTGAAACAACGT
TTGATGGCGCTCAACAACCGTCTAAAACGATTCATCAAACGTGAAAAGCA
ATACCACCACAACAACACGTTTGAAAATGATCCGGGCAAGTTCTACGACG
AAGTGCGCGATAACAAAATACACATCAGCGAACCTCCAACAGAGCAAGAC
ATCAACTCGTTTTGGAAGCCAATATTTAACAACGAGCAACATTACAATCA
AGATGCGTATTGGCTCGACGAATACACAAATGACGTAAACGAACAGATTG
TCGAATCCGAATATCAACCCATTACGAGTGAAGAGGTTAAATCAGCAACT
TCCAAATTCCAGAACTGGAAAAGCCCAGGCATAGACAAAATCCATAACTT
CTGGTGGTGCTACTTGACTAACCTACACCCAAAGATAGCAGACATACTCC
ACCAAACTATCAACAATCCCAACGATACACCTCAATGGCTGACAACTGGA
CGTACAACCCTTGTTCCGAAGAAAGCCGAGACCAGAAACCCTGCCAACTA
TCGACCCATCACATGCCTGCCAATCATATACAAAATCATGACGAGCATTA
TAACGAACCGGATGAAGAACCACATCGACCAAAACCATCTGGTCCCGGAC
GAGCAAAAAGGATGCTCGAACAAAACCTACGGTACCATCGATCAACTGGC
AGTCAATGCAATGGTGATGTCAGACGCCGTCAAGAAATGCCGCAATATCA
GCACTGCGTGGATTGACTACAAGAAGGCATTTGACTCCATCCCTCACGAC
TGGCTAATTGAATCGCTCAAAATCCACAAGTTTGATCCTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009165-exon-sc0000090-1491911889:173890..175433 | TCONS_00009165-exon-sc0000090-1491911889:173890..175433 | Clytia hemisphaerica | exon |
| TCONS_00009165-exon-sc0000090-1510915933:173890..175433 | TCONS_00009165-exon-sc0000090-1510915933:173890..175433 | Clytia hemisphaerica | exon |
| TCONS_00009165-exon-sc0000090-1575043694:173890..175433 | TCONS_00009165-exon-sc0000090-1575043694:173890..175433 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:173890..175433 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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