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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009162 ID=TCONS_00009162|Name=TCONS_00009162|organism=Clytia hemisphaerica|type=transcript|length=1095bp
CTCTCGAAATACCAACTATTTTTATCAGCAAATGAGCCATTTCAATAACT
TTACtaactattttgaaaattctcaacATTAATACCCATGATTTCGGAtt
accgtaaatcctcgaataagcgcccgggTGCTTATTTAATTTTCTAGGCC
CTAAGGGGGGCGTATATTCAAGcagggcgcttattcgaggatttacggta
ttAAAACTGTATTATTTACAAAGAGATTTTATTCAAGACTCCAACCATCA
TTGCAAAACCTGGTTCATGGAAATCACTGGTGACATCAATTTGCCATTGG
CTATAATCATTATAATTATTTGTTTCATGCCAGGCTCGTTCGAACTCCAA
ACACTGCTCAATTTTCTTCGGATGGAGTAATATAAAACTACCTTTTCCCC
ATAATCCTCTgtaaagatcttcaaacatgaaCATGTGGTCATCTGTACAG
TCGAAAGCATCCCAAGGGTCATCGTTCTCGACTCCTTGGAAAATATACTG
TTTATACCATTCTGGATGTGTCTCGAAGTAATTCATATCTCgtttcataa
aaatatattttgatgtcCTATACGGAGTATTGTCCTCCATCATTTTCGAA
ATTCCCTCAAACCATTCCTCATAAGAGTCGTATAAAATATGACTCAATTT
CTTtccttggaaaaatgtttcagctCCCCAAACCATATGTTCTATATCAT
CGTGTGGtccaattttcattttgatatctTCAATCTGGCCTTTCACAATG
CCTAAAGTGTCTCTTGTCGTGTGGTactcattttcaattttgtcaatttt
ccccGGATGTTTTTCCCTTTCTGTCTTCATTTCATATTTTATTCCTTTAA
TTTCGTTTTTCAATCTCTCAATTGTTTCTTCATAACCCTTCTTGACATTC
CCCACTTTTTCGTTGACCAGTGTTCTTGTGCGTACATTTAGTTTAGGCCT
ATTTGCAGATGACATTCTCTTTGGctgatcttttttttaattttaatgtt
tTGCTAAAAGGAGAGACGAAGAGGAAATATTAAAAAGctcaaataaagaa
aaatgaaatgctGCATATGATATGAGGCTACGGCTCCATGAAAAC Run BLAST on NCBI protein sequence of TCONS_00009162-protein >TCONS_00009162-protein ID=TCONS_00009162-protein|Name=TCONS_00009162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MSSANRPKLNVRTRTLVNEKVGNVKKGYEETIERLKNEIKGIKYEMKTER
EKHPGKIDKIENEYHTTRDTLGIVKGQIEDIKMKIGPHDDIEHMVWGAET
FFQGKKLSHILYDSYEEWFEGISKMMEDNTPYRTSKYIFMKRDMNYFETH
PEWYKQYIFQGVENDDPWDAFDCTDDHMFMFEDLYRGLWGKGSFILLHPK
KIEQCLEFERAWHETNNYNDYSQWQIDVTSDFHEPGFAMMVGVLNKISL Run BLAST on NCBI transcript from alignment at sc0000090:108941..110035 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009162 ID=TCONS_00009162|Name=TCONS_00009162|organism=Clytia hemisphaerica|type=transcript|length=1095bp|location=Sequence derived from alignment at sc0000090:108941..110035 (Clytia hemisphaerica)
GTTTTCATGGAGCCGTAGCCTCATATCATATGCagcatttcatttttctt
tatttgagCTTTTTAATATTTCCTCTTCGTCTCTCCTTTTAGCAaaacat
taaaattaaaaaaaagatcagCCAAAGAGAATGTCATCTGCAAATAGGCC
TAAACTAAATGTACGCACAAGAACACTGGTCAACGAAAAAGTGGGGAATG
TCAAGAAGGGTTATGAAGAAACAATTGAGAGATTGAAAAACGAAATTAAA
GGAATAAAATATGAAATGAAGACAGAAAGGGAAAAACATCCggggaaaat
tgacaaaattgaaaatgagtACCACACGACAAGAGACACTTTAGGCATTG
TGAAAGGCCAGATTGAagatatcaaaatgaaaattggaCCACACGATGAT
ATAGAACATATGGTTTGGGGagctgaaacatttttccaaggaAAGAAATT
GAGTCATATTTTATACGACTCTTATGAGGAATGGTTTGAGGGAATTTCGA
AAATGATGGAGGACAATACTCCGTATAGgacatcaaaatatatttttatg
aaacGAGATATGAATTACTTCGAGACACATCCAGAATGGTATAAACAGTA
TATTTTCCAAGGAGTCGAGAACGATGACCCTTGGGATGCTTTCGACTGTA
CAGATGACCACATGttcatgtttgaagatctttacAGAGGATTATGGGGA
AAAGGTAGTTTTATATTACTCCATCCGAAGAAAATTGAGCAGTGTTTGGA
GTTCGAACGAGCCTGGCATGAAACAAATAATTATAATGATTATAGCCAAT
GGCAAATTGATGTCACCAGTGATTTCCATGAACCAGGTTTTGCAATGATG
GTTGGAGTCTTGAATAAAATCTCTTTGTAAATAATACAGTTTTaataccg
taaatcctcgaataagcgccctgCTTGAATATACGCCCCCCTTAGGGCCT
AGAAAATTAAATAAGCAcccgggcgcttattcgaggatttacggtaaTCC
GAAATCATGGGTATTAATgttgagaattttcaaaatagttaGTAAAGTTA
TTGAAATGGCTCATTTGCTGATAAAAATAGTTGGTATTTCGAGAG Coding sequence (CDS) from alignment at sc0000090:108941..110035 >TCONS_00009162 ID=TCONS_00009162|Name=TCONS_00009162|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0000090:108941..110035 (Clytia hemisphaerica)
ATGTCATCTGCAAATAGGCCTAAACTAAATGTACGCACAAGAACACTGGT
CAACGAAAAAGTGGGGAATGTCAAGAAGGGTTATGAAGAAACAATTGAGA
GATTGAAAAACGAAATTAAAGGAATAAAATATGAAATGAAGACAGAAAGG
GAAAAACATCCggggaaaattgacaaaattgaaaatgagtACCACACGAC
AAGAGACACTTTAGGCATTGTGAAAGGCCAGATTGAagatatcaaaatga
aaattggaCCACACGATGATATAGAACATATGGTTTGGGGagctgaaaca
tttttccaaggaAAGAAATTGAGTCATATTTTATACGACTCTTATGAGGA
ATGGTTTGAGGGAATTTCGAAAATGATGGAGGACAATACTCCGTATAGga
catcaaaatatatttttatgaaacGAGATATGAATTACTTCGAGACACAT
CCAGAATGGTATAAACAGTATATTTTCCAAGGAGTCGAGAACGATGACCC
TTGGGATGCTTTCGACTGTACAGATGACCACATGttcatgtttgaagatc
tttacAGAGGATTATGGGGAAAAGGTAGTTTTATATTACTCCATCCGAAG
AAAATTGAGCAGTGTTTGGAGTTCGAACGAGCCTGGCATGAAACAAATAA
TTATAATGATTATAGCCAATGGCAAATTGATGTCACCAGTGATTTCCATG
AACCAGGTTTTGCAATGATGGTTGGAGTCTTGAATAAAATCTCTTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009162-exon-sc0000090-1491911889:108941..110035 | TCONS_00009162-exon-sc0000090-1491911889:108941..110035 | Clytia hemisphaerica | exon |
| TCONS_00009162-exon-sc0000090-1510915933:108941..110035 | TCONS_00009162-exon-sc0000090-1510915933:108941..110035 | Clytia hemisphaerica | exon |
| TCONS_00009162-exon-sc0000090-1575043694:108941..110035 | TCONS_00009162-exon-sc0000090-1575043694:108941..110035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:108941..110035 . |
Blast
The following BLAST results are available for this feature:
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