TCONS_00009152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009152
Unique NameTCONS_00009152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1070

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009152 ID=TCONS_00009152|Name=TCONS_00009152|organism=Clytia hemisphaerica|type=transcript|length=1070bp
gaaaaatatttaaataagaAAGTCCAAGAAGTATACAGCAAAATAACGGA
AGACAAATCATACAAGAAAAGAAAACGATGGCGAGAGAAACCAACGCAAT
TTTATTCGTAGCAATCTTCAACATTTTCATGAAAGAATTGATTATCGAAG
GCAAACCAACATCAATAGTAGACTGCAGTAACCCAAAATGCATCAATGTT
CCCATAAAACATGTCTGTGGTGAGAAAAATGGGTCAATGTTGACTTTTGA
AAACAGATGTGAACTGGAGCTAGCCAAATGCAAAATTCCTGAAATCACTT
TTGTTCAGGAAGGAAAATGCAAAGAAAAATGGCGTTGTAAAGATGTTAAA
TGCCCAACAGGTCAATCTTGTATTTATGATCAAGATGGTTTCTCATACTG
CATCGAAACCAACTGCGAACAAGCATTGACCAAGAAATGTCCAGTAGAAG
GCAAGAAAGTTTGCGGTTTGAACAATATCACTTATGAATCGGAATGCCAC
TTAGAAAAAGAAGCCTGTAACACACACCAAGTGCTTTTGAAAAGATACGA
TGGTTCTTGCGAAGAAAAGAAGACATGCGCAGATACAGTATGTAGGAAAG
GAGAATCTTGCGTCACAGCTAAAGATGGTACCCCTCGTTGTATTGAATGT
TGTTTAAATAAGAAAGACACAAATTATAAAGTCCCAATGTGTGGTAGTGA
CGGTAAAACATATTCCTCTTGGTGTGAAATGCGCGCAGAGAGCTGTCGCT
TAGGTAAGCTGATCGAGTTCGTTGATTGGCTATGCTCGAAATAGATTGGT
CGTTGAAAATAATCTGTGAATTTGATCAGTAATCGAAAAAAACAACGGAC
GAAGGTTAGACAAATTTGAATGGAAAGTGTTATTCAAGATGAGCAAAGAC
ATAAGCAAAGAGGTTCGGCAAGTAATCATAAAACTATCAAAAGGATCGAA
GAGATATATTCATGAGTAAAATCCTCTACAAAAGCCATTACCAAAGGAAA
GAACACACAACAATGAACACATTTACCCAAACTCAAACCCAGACTCTTGG
TTCGCTtatttatgattctg
Run BLAST on NCBI

protein sequence of TCONS_00009152-protein

>TCONS_00009152-protein ID=TCONS_00009152-protein|Name=TCONS_00009152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MARETNAILFVAIFNIFMKELIIEGKPTSIVDCSNPKCINVPIKHVCGEK
NGSMLTFENRCELELAKCKIPEITFVQEGKCKEKWRCKDVKCPTGQSCIY
DQDGFSYCIETNCEQALTKKCPVEGKKVCGLNNITYESECHLEKEACNTH
QVLLKRYDGSCEEKKTCADTVCRKGESCVTAKDGTPRCIECCLNKKDTNY
KVPMCGSDGKTYSSWCEMRAESCRLGKLIEFVDWLCSK
Run BLAST on NCBI

transcript from alignment at sc0000090:632030..634705-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009152 ID=TCONS_00009152|Name=TCONS_00009152|organism=Clytia hemisphaerica|type=transcript|length=2676bp|location=Sequence derived from alignment at sc0000090:632030..634705- (Clytia hemisphaerica)
GAAAAATATTTAAATAAGAAAGTCCAAGAAGTATACAGCAAAATAACGGA
AGACAAATCATACAAGAAAAGAAAACGATGGCGAGAGAAACCAACGCAAT
TTTATTCGTAGCAATCTTCAACATTTTCATGAAAGAATTGATTATCGAAG
GTAAGACGTATTTGTAATTAACATGGAAGTTCTAACTGAGTTTATCCAGG
GAGGGGAAGGGATACTCAACTTAAAAACACAAATTCGAGCGAGCATTTAA
CATTGCACATTGCACAGCATCTTGGTCCTACTTTTATAAGGGACTTTTTG
AGTTTTAAGCCTAAAAATGTTCTTAACATCTTCTTAATTTCACGTAATTT
CACCATTTTGTGAGTATTTTGGTCCATTTTCCCAAGCAATTGGGTATTTC
AAAGCTTTACAAAGACTTAAAATGTTCTAAAGATGTTCTTAAAATTTTGG
CCATCGAAGCCTTGTTTTTATATAGTTTGCTCTTATATAAAAAAATGTAT
ATTTACAGATATTTTTTCTTATCATTAGGCAAACCAACATCAATAGTAGA
CTGCAGTAACCCAAAATGCATCAATGTTCCCATAAAACATGTCTGTGGTG
AGAAAAATGGGTCAATGTTGACTTTTGAAAACAGATGTGAACTGGAGCTA
GCCAAATGCAAAATTCCTGAAATCACTTTTGTTCAGGAAGGAAAATGCAA
AGGTGAGATATTTCATCCATAACCAACTAATAATTTAGACCAGTAAAGAA
TAAAAGGAAGTCCGAGAAAATTCATCAAGCCAACATATTCAAAGCAAAAG
ATGAAAATTTTTGATTTAAAAACAGCTATATTTCCATATACATCATTCAG
GCAAATTTCTAAATCGAAGATTTTCACCTTTTGCTTTGTAGATCTTTGAT
CGGCTAATAAATACTGTACTTTTTTGACGCTTCAGTTATGCCCATAACGC
TCATTCAAATAATGTTCTCATTGCGTTAATAATATGACGTCCACATAAAT
TTATCATAACGTCTACATAACGTTCTCAAAACGTCCATGCAAGTTCACAT
AGCCTCTTTTTAACGCCCATTTTGAAATTAGATCGATGTTAAAAACAGGA
TTTCACAGATCTTTACTCAGAGAGGGGTGTTTTCGAAGGGGCGTTTAAAA
GAAGGGGCGTTTAAAAGAAGTAATACGGTAATCAATTTTCACTCTAATTA
TTATAGAAAAATGGCGTTGTAAAGATGTTAAATGCCCAACAGGTCAATCT
TGTATTTATGATCAAGATGGTTTCTCATACTGCATCGAAACCAACTGCGA
ACAAGCATTGACCAAGAAATGTCCAGTAGAAGGCAAGAAAGTTTGCGGTT
TGAACAATATCACTTATGAATCGGAATGCCACTTAGAAAAAGAAGCCTGT
AACACACACCAAGTGCTTTTGAAAAGATACGATGGTTCTTGCGAAGGTAC
AGGATAAAATATTTTACTTCTTCAAGTCATTGTGCTAGCTCTTTTTTCAA
ATATCACCCACTTAAATTTTGTGGCTAGACTAGTAAACCTCGTTGTTGTA
TTTTCCCAGCCGGCACACTACGTCAAAACAACGTCCATTTGAGATTCATA
ACGTCCAAATAACGTTATTTGAACGTTAAAACAACGTTGTGTGCCAGCTG
GGTTGTTGCAGCTTACCCTTTCATTAGACTACTCACTACGTACATTGAAT
ACAACGACTAGATCTAAGATAGGGATTTTTACTAAATAAACGGCTTTCCA
AACCTCTCTCTTCCGGTAATTAATATTCATATAAGAACCTAAGTAATATT
CCCGTTTTACCGTGTCTCAGGAAAGGTGCTTGCTAGTCTGAACCATAGAT
TTGTAAAGCCCGAAGGGCTAGATGTCGGGCTTTAAGCCATCACAGGCAAA
AGTGAATATCGGAAAAAAATATTGTTGCTATTGTTTTCGAAAACCCGCAA
AAGCTTCTTATTGGTCAAGCGCTGAAATTCTATTGTAATGTCACGTGACT
TAGGTAGGATTTCTTACCTAACTACGGCACACTTTTTAGCCCTTCGGGCT
TTACAAATCTATGGTCTGGACTACTTTATTTGATAAAAACCCGTATTTCT
TTCCTGCCTACTAGGTTAGTTAATTCTGTTCACTTTTAAAATTCACCAAG
ATTCTCTAATCTCTTTATAGAAAAGAAGACATGCGCAGATACAGTATGTA
GGAAAGGAGAATCTTGCGTCACAGCTAAAGATGGTACCCCTCGTTGTATT
GAATGTTGTTTAAATAAGAAAGACACAAATTATAAAGTCCCAATGTGTGG
TAGTGACGGTAAAACATATTCCTCTTGGTGTGAAATGCGCGCAGAGAGCT
GTCGCTTAGGTAAGCTGATCGAGTTCGTTGATTGGCTATGCTCGAAATAG
ATTGGTCGTTGAAAATAATCTGTGAATTTGATCAGTAATCGAAAAAAACA
ACGGACGAAGGTTAGACAAATTTGAATGGAAAGTGTTATTCAAGATGAGC
AAAGACATAAGCAAAGAGGTTCGGCAAGTAATCATAAAACTATCAAAAGG
ATCGAAGAGATATATTCATGAGTAAAATCCTCTACAAAAGCCATTACCAA
AGGAAAGAACACACAACAATGAACACATTTACCCAAACTCAAACCCAGAC
TCTTGGTTCGCTTATTTATGATTCTG

Coding sequence (CDS) from alignment at sc0000090:632030..634705-

>TCONS_00009152 ID=TCONS_00009152|Name=TCONS_00009152|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at sc0000090:632030..634705- (Clytia hemisphaerica)
AAAAGAAGACATGCGCAGATACAGTATGTAGGAAAGGAGAATCTTGCGTC
ACAGCTAAAGATGGTACCCCTCGTTGTATTGAATGTTGTTTAAATAAGAA
AGACACAAATTATAAAGTCCCAATGTGTGGTAGTGACGGTAAAACATATT
CCTCTTGGTGTGAAATGCGCGCAGAGAGCTGTCGCTTAGGTAAGCTGATC
GAGTTCGTTGATTGGCTATGCTCGAAATAGAAAAATGGCGTTGTAAAGAT
GTTAAATGCCCAACAGGTCAATCTTGTATTTATGATCAAGATGGTTTCTC
ATACTGCATCGAAACCAACTGCGAACAAGCATTGACCAAGAAATGTCCAG
TAGAAGGCAAGAAAGTTTGCGGTTTGAACAATATCACTTATGAATCGGAA
TGCCACTTAGAAAAAGAAGCCTGTAACACACACCAAGTGCTTTTGAAAAG
ATACGATGGTTCTTGCGAAGGCAAACCAACATCAATAGTAGACTGCAGTA
ACCCAAAATGCATCAATGTTCCCATAAAACATGTCTGTGGTGAGAAAAAT
GGGTCAATGTTGACTTTTGAAAACAGATGTGAACTGGAGCTAGCCAAATG
CAAAATTCCTGAAATCACTTTTGTTCAGGAAGGAAAATGCAAAGATGGCG
AGAGAAACCAACGCAATTTTATTCGTAGCAATCTTCAACATTTTCATGAA
AGAATTGATTATCGAAGAAAAGAAGACATGCGCAGATACAGTATGTAGGA
AAGGAGAATCTTGCGTCACAGCTAAAGATGGTACCCCTCGTTGTATTGAA
TGTTGTTTAAATAAGAAAGACACAAATTATAAAGTCCCAATGTGTGGTAG
TGACGGTAAAACATATTCCTCTTGGTGTGAAATGCGCGCAGAGAGCTGTC
GCTTAGGTAAGCTGATCGAGTTCGTTGATTGGCTATGCTCGAAATAGAAA
AATGGCGTTGTAAAGATGTTAAATGCCCAACAGGTCAATCTTGTATTTAT
GATCAAGATGGTTTCTCATACTGCATCGAAACCAACTGCGAACAAGCATT
GACCAAGAAATGTCCAGTAGAAGGCAAGAAAGTTTGCGGTTTGAACAATA
TCACTTATGAATCGGAATGCCACTTAGAAAAAGAAGCCTGTAACACACAC
CAAGTGCTTTTGAAAAGATACGATGGTTCTTGCGAAGGCAAACCAACATC
AATAGTAGACTGCAGTAACCCAAAATGCATCAATGTTCCCATAAAACATG
TCTGTGGTGAGAAAAATGGGTCAATGTTGACTTTTGAAAACAGATGTGAA
CTGGAGCTAGCCAAATGCAAAATTCCTGAAATCACTTTTGTTCAGGAAGG
AAAATGCAAAGATGGCGAGAGAAACCAACGCAATTTTATTCGTAGCAATC
TTCAACATTTTCATGAAAGAATTGATTATCGAAGAAAAGAAGACATGCGC
AGATACAGTATGTAGGAAAGGAGAATCTTGCGTCACAGCTAAAGATGGTA
CCCCTCGTTGTATTGAATGTTGTTTAAATAAGAAAGACACAAATTATAAA
GTCCCAATGTGTGGTAGTGACGGTAAAACATATTCCTCTTGGTGTGAAAT
GCGCGCAGAGAGCTGTCGCTTAGGTAAGCTGATCGAGTTCGTTGATTGGC
TATGCTCGAAATAGAAAAATGGCGTTGTAAAGATGTTAAATGCCCAACAG
GTCAATCTTGTATTTATGATCAAGATGGTTTCTCATACTGCATCGAAACC
AACTGCGAACAAGCATTGACCAAGAAATGTCCAGTAGAAGGCAAGAAAGT
TTGCGGTTTGAACAATATCACTTATGAATCGGAATGCCACTTAGAAAAAG
AAGCCTGTAACACACACCAAGTGCTTTTGAAAAGATACGATGGTTCTTGC
GAAGGCAAACCAACATCAATAGTAGACTGCAGTAACCCAAAATGCATCAA
TGTTCCCATAAAACATGTCTGTGGTGAGAAAAATGGGTCAATGTTGACTT
TTGAAAACAGATGTGAACTGGAGCTAGCCAAATGCAAAATTCCTGAAATC
ACTTTTGTTCAGGAAGGAAAATGCAAAGATGGCGAGAGAAACCAACGCAA
TTTTATTCGTAGCAATCTTCAACATTTTCATGAAAGAATTGATTATCGAA
GAAAAGAAGACATGCGCAGATACAGTATGTAGGAAAGGAGAATCTTGCGT
CACAGCTAAAGATGGTACCCCTCGTTGTATTGAATGTTGTTTAAATAAGA
AAGACACAAATTATAAAGTCCCAATGTGTGGTAGTGACGGTAAAACATAT
TCCTCTTGGTGTGAAATGCGCGCAGAGAGCTGTCGCTTAGGTAAGCTGAT
CGAGTTCGTTGATTGGCTATGCTCGAAATAGAAAAATGGCGTTGTAAAGA
TGTTAAATGCCCAACAGGTCAATCTTGTATTTATGATCAAGATGGTTTCT
CATACTGCATCGAAACCAACTGCGAACAAGCATTGACCAAGAAATGTCCA
GTAGAAGGCAAGAAAGTTTGCGGTTTGAACAATATCACTTATGAATCGGA
ATGCCACTTAGAAAAAGAAGCCTGTAACACACACCAAGTGCTTTTGAAAA
GATACGATGGTTCTTGCGAAGGCAAACCAACATCAATAGTAGACTGCAGT
AACCCAAAATGCATCAATGTTCCCATAAAACATGTCTGTGGTGAGAAAAA
TGGGTCAATGTTGACTTTTGAAAACAGATGTGAACTGGAGCTAGCCAAAT
GCAAAATTCCTGAAATCACTTTTGTTCAGGAAGGAAAATGCAAAGATGGC
GAGAGAAACCAACGCAATTTTATTCGTAGCAATCTTCAACATTTTCATGA
AAGAATTGATTATCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005127XLOC_005127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009152-exon-sc0000090-1575043694:634556..634705TCONS_00009152-exon-sc0000090-1575043694:634556..634705Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1575043694:634004..634177TCONS_00009152-exon-sc0000090-1575043694:634004..634177Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1575043694:633260..633499TCONS_00009152-exon-sc0000090-1575043694:633260..633499Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1575043694:632030..632535TCONS_00009152-exon-sc0000090-1575043694:632030..632535Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1510915933:634556..634705TCONS_00009152-exon-sc0000090-1510915933:634556..634705Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1510915933:634004..634177TCONS_00009152-exon-sc0000090-1510915933:634004..634177Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1510915933:633260..633499TCONS_00009152-exon-sc0000090-1510915933:633260..633499Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1510915933:632030..632535TCONS_00009152-exon-sc0000090-1510915933:632030..632535Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1491911889:634556..634705TCONS_00009152-exon-sc0000090-1491911889:634556..634705Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1491911889:634004..634177TCONS_00009152-exon-sc0000090-1491911889:634004..634177Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1491911889:633260..633499TCONS_00009152-exon-sc0000090-1491911889:633260..633499Clytia hemisphaericaexon
TCONS_00009152-exon-sc0000090-1491911889:632030..632535TCONS_00009152-exon-sc0000090-1491911889:632030..632535Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009152-proteinTCONS_00009152-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:632030..634705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.111135	0.0878206	3.01963	2.82694	3.05561	1.2903	2.00383	2.82658	27.8154	18.4134	9.31229	11.0732	11.2286	19.6888	0.876042	0.779208	58.2853	59.1132	11.4806	7.51672	35.0383	17.728	0.226002	0.964784	4.07038	5.73135
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003645Fol_N
IPR002350Kazal_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00009152 vs. Swiss-Prot (Human)
Match: FST (Follistatin OS=Homo sapiens GN=FST PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.242e-23
Identity = 70/202 (34.65%), Postives = 100/202 (49.50%), Query Frame = 3 
Query:  183 PKCINVPIKH-VCGEKNGSMLTFENRCELELAKCK-IPEITFVQEGKCKEKWRCKDVKCPTGQSCIYDQDGFSYCIETNCEQALTKKCPVEG---KKVCGLNNITYESECHLEKEACNTHQVLLKRYDGSCEEKKTCADTVCRKGESCV-TAKDGTPRCIECCLNKKDTNYKVPMCGSDGKTYSSWCEMRAESCRLGKLIEF 770
            P C N+  K  VCG       T+ N C L  A+CK  PE+    +G+CK+   C+DV CP   +C+ DQ   +YC+  N      + CP      + +CG + +TY S CHL K  C   + +   Y+G C + K+C D  C  G+ C+   K G  RC  C     D+    P+C SD  TY+S C M+  +C  G L+E 
Sbjct:  120 PDCSNITWKGPVCGLDGK---TYRNECALLKARCKEQPELEVQYQGRCKKT--CRDVFCPGSSTCVVDQTNNAYCVTCN------RICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECAMKEAACSSGVLLEV 310
The following BLAST results are available for this feature:
BLAST of TCONS_00009152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FST8.242e-2334.65Follistatin OS=Homo sapiens GN=FST PE=1 SV=2[more]
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