TCONS_00009146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009146
Unique NameTCONS_00009146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009146 ID=TCONS_00009146|Name=TCONS_00009146|organism=Clytia hemisphaerica|type=transcript|length=588bp
ACTTGGTTTACTTTATGGTAGCACCTGCATCCGTCTATCGTTCAAGATTG
TAGTATCACGTTTCGTGTGGGTGGCAAACAACATGATGACAGCTGAGAGC
GTGGAGAGCTAGGTTGAAGATCCAATTTTCCTCCAGTGCTCAAATGCATG
TTTGATGTAGTCGATGTACGTCCAACCATGTACAGATAACATGAAACAGA
ATAAAAGTGAAGAAGTTAGTCACGAAAATCTCCCCAAGCAAAACCAGCGA
GAAATTGGGAGTCGGGAGGCTGCCACAACCCTTTGCAATTAGGCTCTACC
TCCCTTTTCAGCTCACAGCCAGTTTCTGATCAACAATCTTCCCTCCCTGT
CTAAGTCCATAGGGCTAGGAAGAGGCAAGTCTGAATATAAAGCATCAGCC
CGAATTCGGCCAACAAGTTTTGAAAGTATTGGAAGTTGCTCATGTACAGC
CAGCACCCAGCTCTTCTGCAGTCTATTTGTCACATAGTGTCCCTCCTCCA
CTTTCTGAAAATGATGGCACATCTACTCACATTCAATGATATCATTCCAT
CATAAAAAGTCAATGTTGTTTTGAGAATTCAGTccttt
Run BLAST on NCBI

transcript from alignment at sc0000090:433717..434363-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009146 ID=TCONS_00009146|Name=TCONS_00009146|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at sc0000090:433717..434363- (Clytia hemisphaerica)
ACTTGGTTTACTTTATGGTAGCACCTGCATCCGTCTATCGTTCAAGATTG
TAGTATCACGTTTCGTGTGGGTGGCAAACAACATGATGACAGCTGAGAGC
GTGGAGAGCTAGGTTGAAGATCCAATTTTCCTCCAGTGCTCAAATGCATG
TTTGATGTAGTCGATGTACGTCCAACCATGTACAGATAACATGAAACAGA
ATAAAAGTGAAGAAGTTAGTTACGAAAATCTCCCCAAGCNACAGATAACA
TGAAACAGAATAAAAGTGAAGAAGTTAGTCACGAAAATCTCCCCAAGCAA
AACCAGCGAGAAATTGGGAGTCGGGAGGCTGCCACAACCCTTTGCAATTA
GGCTCTACCTCCCTTTTCAGCTCACAGCCAGTTTCTGATCAACAATCTTC
CCTCCCTGTCTAAGTCCATAGGGCTAGGAAGAGGCAAGTCTGAATATAAA
GCATCAGCCCGAATTCGGCCAACAAGTTTTGAAAGTATTGGAAGTTGCTC
ATGTACAGCCAGCACCCAGCTCTTCTGCAGTCTATTTGTCACATAGTGTC
CCTCCTCCACTTTCTGAAAATGATGGCACATCTACTCACATTCAATGATA
TCATTCCATCATAAAAAGTCAATGTTGTTTTGAGAATTCAGTCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005124XLOC_005124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009146-exon-sc0000090-1575043694:434174..434363TCONS_00009146-exon-sc0000090-1575043694:434174..434363Clytia hemisphaericaexon
TCONS_00009146-exon-sc0000090-1575043694:433717..434114TCONS_00009146-exon-sc0000090-1575043694:433717..434114Clytia hemisphaericaexon
TCONS_00009146-exon-sc0000090-1510915933:434174..434363TCONS_00009146-exon-sc0000090-1510915933:434174..434363Clytia hemisphaericaexon
TCONS_00009146-exon-sc0000090-1510915933:433717..434114TCONS_00009146-exon-sc0000090-1510915933:433717..434114Clytia hemisphaericaexon
TCONS_00009146-exon-sc0000090-1491911889:434174..434363TCONS_00009146-exon-sc0000090-1491911889:434174..434363Clytia hemisphaericaexon
TCONS_00009146-exon-sc0000090-1491911889:433717..434114TCONS_00009146-exon-sc0000090-1491911889:433717..434114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:433717..434363 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.557161	0	6.22448	1.9271	6.69459	12.4923	4.15019	5.56191	0.456534	0.0201658	0.59457	0.976202	1.50225	2.44309	0	0	0	0	0.291351	0.0903726	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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