TCONS_00009145 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009145
Unique Name	TCONS_00009145
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2412

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000090:432648..435059-

transcript sequence

>TCONS_00009145 ID=TCONS_00009145|Name=TCONS_00009145|organism=Clytia hemisphaerica|type=transcript|length=2412bp
GGATGAGATTGAACAATAGGTGAAGAGTCATGATGTTATATGGAGACTAG
ATATATATTTTTGACAATGAAGACATACTGTCCAAATAATCCCAAACTTT
ATCTTAGCTGATCTGGATTAATATGCCAATATACTAGTTAACTGAATATG
AAGATTCATTGTTGTCTTGTCGATGGTCAGGCTTCAACTGTCCTTGCTGG
AGAGAATGGACTCTCAAAACCACATGGCACAAGGAGGAGAGCTCACTCGG
CCCAATCTCCCAGCAAGGAACTCAAAGATGAAGTGCACTGGGGGCCAGTA
GAGATCTAGACTAGCCTCAAATACAAACAATGATCTCTACTGTCAGGGCA
AGATGGTAGACCCAGCTAGAATATATATTATACAAACATATTATCCATGT
AacatataatatatattatccTATAACATATAACAATCATAATACCAAAT
CAATATAACCTTAGTTTTGCTTCCTTACAACTCAGCATCTTGTCAATAAG
TCTATCAACCAATCCCATAGCAATAATCAACCAATACATGTGTGCAAGTT
TATTATACAATCATCCAAGTCAATAGGTCAAACCAACTTTAACAAAAATC
ACCATACATACCACTGTTGGAAAACAAAACAATCGGCATACAGTAGTTAG
TTGCATACATCCATCATCCAGAACAGGCCAATTCGAAATCGCATTAACTT
GGTTTACTTTATGGTAGCACCTGCATCCGTCTATCGTTCAAGATTGTAGT
ATCACGTTTCGTGTGGGTGGCAAACAACATGATGACAGCTGAGAGCGTGG
AGAGCTAGGTTGAAGATCCAATTTTCCTCCAGTGCTCAAATGCATGTTTG
ATGTAGTCGATGTACGTCCAACCATGTACAGATAACATGAAACAGAATAA
AAGTGAAGAAGTTAGTTACGAAAATCTCCCCAAGCNACAGATAACATGAA
ACAGAATAAAAGTGAAGAAGTTAGTCACGAAAATCTCCCCAAGCAAAACC
AGCGAGAAATTGGGAGTCGGGAGGCTGCCACAACCCTTTGCAATTAGGCT
CTACCTCCCTTTTCAGCTCACAGCCAGTTTCTGATCAACAATCTTCCCTC
CCTGTCTAAGTCCATAGGGCTAGGAAGAGGCAAGTCTGAATATAAAGCAT
CAGCCCGAATTCGGCCAACAAGTTTTGAAAGTATTGGAAGTTGCTCATGT
ACAGCCAGCACCCAGCTCTTCTGCAGTCTATTTGTCACATAGTGTCCCTC
CTCCACTTTCTGAAAATGATGGCACATCTACTCACATTCAATGATATCAT
TCCATCATAAAAAGTCAATGTTGTTTTGAGAATTCAGTcctttatcgacc
gccggaggcggtttctttcatagtggtacgctaatatcgttttgccttgg
ctcattactttgtctaccatttactttcggtttttttaactagattaccc
aggtgtttctcttttttttccctgaatgtaatttattcggaattgaataa
tcgagacatgaaaaatgactatattggaatctgttttcaatgaataatct
aaagtgtactggagatgacatgtaggcgttaataatgtgcgcgcgctctt
tcgcgagcgtgatgcgtgacggaaggcggtcgtttcagtgtggtttacat
ccacactgtgacctagtaccAATACAAACGATTtcgaaaagtttgtttac
aatttCTTTCACGTCTACGGATAccatttttaaatttcgaactGGCGTTT
ACAATTCCACCCGATTTTTCAACAAGTGTCttatttgtttaattttctCG
AATGGTAATTGCCCCAAACCAcgttgtttctttctttcctccTGAACTTC
ACCGAGCTTGCAAGcagcaaaaccaaaacaaacattgTAAGCATAAACTT
TAtctctttcttttcaaatatcatAGTTAAACCTCTCCTAAACCCATGAC
CCCTTTTGGGAGAGACTAGACAGGGAGCTTTTATAAATGTTCTGTGTTCA
ATGCGATTCTCTTTGCAcaacttttgatttaaataaaaattctcaGTTCT
AGCTGTCCCAGGAACAGCTTTTGTGACCAATTGCGGATTGGTCCCCTGGG
GGATCAACAATCTACCCCAGGGCcgtagaaaaatttgaaaaatgccaACA
TTTATAAATAAATGTTTTCCTTACTTGCAGGGTAATCAATATCCAAATCG
GCAGCTGATTTTACCGACGCCTAGCTCTTCACACCACTCAGCACAGTGCT
CAGTGCAAATCCAGCTCTTTATTGTCGTGTTGATTCCGTTGCCAAGATAA
GTTTCCATCAATGTTGACCAATGATGGGGCTTGATGTTGTGAAGCCGATG
AGATGAAGCCTGTCATGATCACCAAAAccaacaaccctctgctaccaATG
TGAGAAAGCGNN

Run BLAST on NCBI

transcript from alignment at sc0000090:432648..435059-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009145 ID=TCONS_00009145|Name=TCONS_00009145|organism=Clytia hemisphaerica|type=transcript|length=2412bp|location=Sequence derived from alignment at sc0000090:432648..435059- (Clytia hemisphaerica)
GGATGAGATTGAACAATAGGTGAAGAGTCATGATGTTATATGGAGACTAG
ATATATATTTTTGACAATGAAGACATACTGTCCAAATAATCCCAAACTTT
ATCTTAGCTGATCTGGATTAATATGCCAATATACTAGTTAACTGAATATG
AAGATTCATTGTTGTCTTGTCGATGGTCAGGCTTCAACTGTCCTTGCTGG
AGAGAATGGACTCTCAAAACCACATGGCACAAGGAGGAGAGCTCACTCGG
CCCAATCTCCCAGCAAGGAACTCAAAGATGAAGTGCACTGGGGGCCAGTA
GAGATCTAGACTAGCCTCAAATACAAACAATGATCTCTACTGTCAGGGCA
AGATGGTAGACCCAGCTAGAATATATATTATACAAACATATTATCCATGT
AACATATAATATATATTATCCTATAACATATAACAATCATAATACCAAAT
CAATATAACCTTAGTTTTGCTTCCTTACAACTCAGCATCTTGTCAATAAG
TCTATCAACCAATCCCATAGCAATAATCAACCAATACATGTGTGCAAGTT
TATTATACAATCATCCAAGTCAATAGGTCAAACCAACTTTAACAAAAATC
ACCATACATACCACTGTTGGAAAACAAAACAATCGGCATACAGTAGTTAG
TTGCATACATCCATCATCCAGAACAGGCCAATTCGAAATCGCATTAACTT
GGTTTACTTTATGGTAGCACCTGCATCCGTCTATCGTTCAAGATTGTAGT
ATCACGTTTCGTGTGGGTGGCAAACAACATGATGACAGCTGAGAGCGTGG
AGAGCTAGGTTGAAGATCCAATTTTCCTCCAGTGCTCAAATGCATGTTTG
ATGTAGTCGATGTACGTCCAACCATGTACAGATAACATGAAACAGAATAA
AAGTGAAGAAGTTAGTTACGAAAATCTCCCCAAGCNACAGATAACATGAA
ACAGAATAAAAGTGAAGAAGTTAGTCACGAAAATCTCCCCAAGCAAAACC
AGCGAGAAATTGGGAGTCGGGAGGCTGCCACAACCCTTTGCAATTAGGCT
CTACCTCCCTTTTCAGCTCACAGCCAGTTTCTGATCAACAATCTTCCCTC
CCTGTCTAAGTCCATAGGGCTAGGAAGAGGCAAGTCTGAATATAAAGCAT
CAGCCCGAATTCGGCCAACAAGTTTTGAAAGTATTGGAAGTTGCTCATGT
ACAGCCAGCACCCAGCTCTTCTGCAGTCTATTTGTCACATAGTGTCCCTC
CTCCACTTTCTGAAAATGATGGCACATCTACTCACATTCAATGATATCAT
TCCATCATAAAAAGTCAATGTTGTTTTGAGAATTCAGTCCTTTATCGACC
GCCGGAGGCGGTTTCTTTCATAGTGGTACGCTAATATCGTTTTGCCTTGG
CTCATTACTTTGTCTACCATTTACTTTCGGTTTTTTTAACTAGATTACCC
AGGTGTTTCTCTTTTTTTTCCCTGAATGTAATTTATTCGGAATTGAATAA
TCGAGACATGAAAAATGACTATATTGGAATCTGTTTTCAATGAATAATCT
AAAGTGTACTGGAGATGACATGTAGGCGTTAATAATGTGCGCGCGCTCTT
TCGCGAGCGTGATGCGTGACGGAAGGCGGTCGTTTCAGTGTGGTTTACAT
CCACACTGTGACCTAGTACCAATACAAACGATTTCGAAAAGTTTGTTTAC
AATTTCTTTCACGTCTACGGATACCATTTTTAAATTTCGAACTGGCGTTT
ACAATTCCACCCGATTTTTCAACAAGTGTCTTATTTGTTTAATTTTCTCG
AATGGTAATTGCCCCAAACCACGTTGTTTCTTTCTTTCCTCCTGAACTTC
ACCGAGCTTGCAAGCAGCAAAACCAAAACAAACATTGTAAGCATAAACTT
TATCTCTTTCTTTTCAAATATCATAGTTAAACCTCTCCTAAACCCATGAC
CCCTTTTGGGAGAGACTAGACAGGGAGCTTTTATAAATGTTCTGTGTTCA
ATGCGATTCTCTTTGCACAACTTTTGATTTAAATAAAAATTCTCAGTTCT
AGCTGTCCCAGGAACAGCTTTTGTGACCAATTGCGGATTGGTCCCCTGGG
GGATCAACAATCTACCCCAGGGCCGTAGAAAAATTTGAAAAATGCCAACA
TTTATAAATAAATGTTTTCCTTACTTGCAGGGTAATCAATATCCAAATCG
GCAGCTGATTTTACCGACGCCTAGCTCTTCACACCACTCAGCACAGTGCT
CAGTGCAAATCCAGCTCTTTATTGTCGTGTTGATTCCGTTGCCAAGATAA
GTTTCCATCAATGTTGACCAATGATGGGGCTTGATGTTGTGAAGCCGATG
AGATGAAGCCTGTCATGATCACCAAAACCAACAACCCTCTGCTACCAATG
TGAGAAAGCGNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005124	XLOC_005124	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009145-exon-sc0000090-1575043694:432648..435059	TCONS_00009145-exon-sc0000090-1575043694:432648..435059	Clytia hemisphaerica	exon
TCONS_00009145-exon-sc0000090-1510915933:432648..435059	TCONS_00009145-exon-sc0000090-1510915933:432648..435059	Clytia hemisphaerica	exon
TCONS_00009145-exon-sc0000090-1491911889:432648..435059	TCONS_00009145-exon-sc0000090-1491911889:432648..435059	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000090	supercontig	sc0000090:432648..435059 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.6999	50.4153	34.035	36.4698	6.90076	5.43718	4.2568	4.33538	8.15301	3.25642	6.68661	13.9379	7.08376	7.61792	1.25257	1.88733	2.27734	1.84144	3.78566	3.70048	2.31486	2.93631	52.89	42.0643	1.08139	1.25508	3.39739	4.66294	42.4657	49.6052

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009145 vs. Swiss-Prot (Human)

BLAST of TCONS_00009145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00009145 (transcript) - C. hemisphaerica