TCONS_00009141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009141
Unique NameTCONS_00009141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009141 ID=TCONS_00009141|Name=TCONS_00009141|organism=Clytia hemisphaerica|type=transcript|length=1226bp
CGCGTTAACAACATTCGTTCAGATTTAAACTTTAAAGAAATGATTGTCAC
AACTTTCTTGGCAATTTTAATTTCTTCGAGGATTTCCAAATCTTCCTCAG
TGAACACAAAGAACATTCCGTGTGAAGATTATATCGCTGGTGACCGTTTC
TCTGCTTGCCATAATGGTTACATTTTCACTTATGTACCACAAAAATTGCT
TCCCTTCGATGGAATATTAGATTGCAACGCCCGAGGAGGTCATTTAGCCA
CCCTTCAAACTCTAGATGATTTGGTTGTATCCGAAGGATTAATAGCAAGG
AACAATGCACAAGGCGAGGTTGTGCTTGGTGGTACCCTCACTATCACAAT
ACCTGTAAATACTGATGGTACAGAAGTTAACCCTTTGATACCGACCCCTC
AAGATGGGTTTATAAGCTCTATAAACGTTGGTGATTCTACATTCAATGAT
ATCTCATCTGTATCATATATCGACAATACACCTTATGAATATCTCTGCAA
ATTCGTTTACCATGGCAACAGTAAAGCTTACATCACTTTTAAAGGAGTGC
TTGATGGTGGTGAAACTATTGACCGAGAGGAGATTGATTGTGGTGAGAAT
GGACAACTGAAAACATTCACCAATTTCAACAAAGTTGCCAGAATTACCAA
AGAACTTAGTTTGAGGACAAGAGAATTGCGTTACTTTATCGGAGCAAAAT
TCGACACAGCAACACTAAAGTTGATTTGGGATAATGGCAGCAAGTCACTA
GTCCGAAATTGGTGTTCTAGCCCACCCTCCATTGACAACCCCAATCATTT
GGACCCAGTCCCTGAACAATGCGTCATGGTGACGTCATCCGGTTGTTGGG
TGTTGCAGGATTGCCAGAGTGGGCCACCAAAGTTTCGTAATTACATCTGT
GACTTTGACCGGAGAGGAAGCCTTAATAGTGAAAATAACGATCAGCTCTT
AACGTTGGTCAATGTACTGAGAGCAAAAATCGACAGGATAACTAAAGATT
GTCAAACTTGTTCGATGAAACATTAAAAGACTCGACATGATTATAGGTTA
TGGGGTCTTTAGAAGACATCCTTAAAAAACTCAACAGGATCTTTCCCACC
Cttgcgagccagggccgatgataaacgattctgcgacttaaagaggccag
tcaacgcgtccatcagaatcatcaatagcgtaagggggttagataagcca
tggggtCGAGGGTGGATCTTTCCAAC
Run BLAST on NCBI

protein sequence of TCONS_00009141-protein

>TCONS_00009141-protein ID=TCONS_00009141-protein|Name=TCONS_00009141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
RVNNIRSDLNFKEMIVTTFLAILISSRISKSSSVNTKNIPCEDYIAGDRF
SACHNGYIFTYVPQKLLPFDGILDCNARGGHLATLQTLDDLVVSEGLIAR
NNAQGEVVLGGTLTITIPVNTDGTEVNPLIPTPQDGFISSINVGDSTFND
ISSVSYIDNTPYEYLCKFVYHGNSKAYITFKGVLDGGETIDREEIDCGEN
GQLKTFTNFNKVARITKELSLRTRELRYFIGAKFDTATLKLIWDNGSKSL
VRNWCSSPPSIDNPNHLDPVPEQCVMVTSSGCWVLQDCQSGPPKFRNYIC
DFDRRGSLNSENNDQLLTLVNVLRAKIDRITKDCQTCSMKH
Run BLAST on NCBI

transcript from alignment at sc0000090:374270..376981-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009141 ID=TCONS_00009141|Name=TCONS_00009141|organism=Clytia hemisphaerica|type=transcript|length=2712bp|location=Sequence derived from alignment at sc0000090:374270..376981- (Clytia hemisphaerica)
CGCGTTAACAACATTCGTTCAGATTTAAACTTTAAAGAAATGATTGTCAC
AACTTTCTTGGCAATTTTAATTTCTTCGAGGATTTCCAAATCTTCCTCAG
TGAACACAAAGAACATTCCGTGTGAAGATTATATCGCTGGTGACCGTTTC
TCTGCTTGCCGTAAGTGCATTTCACCTTTGCTCTCACTCAGATTCCGAAT
ACAGTGAAGTTCTCTAAATTCGAACACACGCGGGCATAAGCTTTGTTATA
AGGCATTATTAGCTGAATTATTCTTTATCAGATAATGCTGCGGGAGCAAA
AATGTGGAAAGCAATGAGTTCGGGNATTCTTTATCAGATAATGCTGTGGG
AGCAAAAATGTGGAAAGCAATGAGTTCGGGATCAAAAATGGGCTTGGAAA
TCGGATCAAAGCATAGAATGGGAAGAACAAAAATGGGGAACGAAAACTAT
ATCTTTTGGAAGTGGGATGAAAAATAGGAAACGTGTACCATAACTGGCAA
CAGGGAGAGAAATTGGGATCAAAATAAAGAAAGAGAATGGGGACAGGAAT
GACGAGGGGAGCGAAGTCAGGAGCTTGAACAGAAATAAAGACATAAACAA
AATGAATTGAATAGGGATTGGGACATGATAAAGAACGGGAATGGGAATGT
GAAAATAAGGATAGCAAGGACAACATGATGGGAACATGTAAAATGTTTCA
AAAAATGAGCTAGATTAATCCCAGCCACGATCCGAAATTTGGAGTTGCTT
ATAAAAGAATGTGCACTCGTACCTCGTAAGTTTAACGTTTTTTTATTTTA
TTGAATTTTTCTTCATCAGATAATGGTTACATTTTCACTTATGTACCACA
AAAATTGCTTCCCTTCGATGGAATATTAGATTGCAACGCCCGAGGAGGTC
ATTTAGCCACCCTTCAAACTCTAGATGATTTGGTTGTATCCGAAGGATTA
ATAGCAAGGAAGTGAGTGACTTTGTTTGTATCTTTTTGTCTCTTATTCTT
ATTTTACTTGAGTAAAAAAGGGAGATTGCAGGTGTCAGCGAAACCTTTAC
TATTTGTAAACGAGGTAAGCATTACTCATGACCTAATTTATGAAAAGGTA
TATTAATGATTTTCAAATTTTTTACTCAAATCGAAAATCTTTATGATATG
TTTTGATATCTGTCTCTTTTATTGAATCCTTTTTAAGTTTCTTGCTCGTG
ATTTGATTTTTACGGCCTTCATTCAAGATCCTGGATCCTGGATGGAGCCT
GGATGGCTGTCATAGTAACTTGTTTTCTCGCTGAGTGTTAAATTGAATTA
GACCTCTCTTCACCTTACAGCATGTATTCATAACCGGTGATACTCTCTGT
ACCTTTTAACCTTTAATATATCTTTCTCAGCAATGCACAAGGCGAGGTTG
TGCTTGGTGGTACCCTCACTATCACAATACCTGTAAATACTGATGGTACA
GAAGTTAACCCTTTGATACCGACCCCTCAAGATGGGTTTATAAGCTCTAT
AAACGTTGGTGATTCTACATTCAATGATATCTCATCTGTATCATATATCG
ACAATACACCTTATGAATATCTCTGCAAATTCGTTTACCATGGCAACAGT
AAAGCTTACATCACTTTTAAAGGAGTGCTTGATGGTGGTGAAACTATTGA
CCGAGAGGAGATTGATTGTGGTGAGAATGGACAACTGAAAACATTCACCA
ATTTCAACAAAGTTGCCAGAATTACCAAAGAACTTAGTTTGAGGTATGGT
TAGTTACGTTTGCTATTCCAGTCTTTTAGAGATCGATTTTTTATGATTCT
GATATCTAGGGCTTATGAAAGATTGTACCAATATTCATCAGTATAACTTA
AAAAGTAGAGTGCAAATTGCTCTGGGTACGAGTTTGGTGTGATATGCTTT
TATATATAGCTTTTTACTTCGAACCTAGATAAATATTACACAAATAACAT
AGCTTAGATGTAGATGGTTCATATACCTAATATCGGTGATGGGAAAGTCA
GGGGTCATTTTTTACTCTTTTTACGGGGAGAAACTTCGTTACTCCTCATT
AAAACTTTTCGTTATTTTCTTTGATAAGGTAAAAGCTTACTTCTTCGGGA
TCATTAAATGGAAGGTTCAATAATGTACTGTTTGTTTTTGTATTTTCTCA
GGACAAGAGAATTGCGTTACTTTATCGGAGCAAAATTCGACACAGCAACA
CTAAAGTTGATTTGGGATAATGGCAGCAAGTCACTAGTCCGAAATTGGTG
TTCTAGCCCACCCTCCATTGACAACCCCAATCATTTGGACCCAGTCCCTG
AACAATGCGTCATGGTGACGTCATCCGGTTGTTGGGTGTTGCAGGATTGC
CAGAGTGGGCCACCAAAGTTTCGTAATTACATCTGTGACTTTGACCGGAG
AGGAAGCCTTAATAGTGAAAATAACGATCAGCTCTTAACGTTGGTCAATG
TACTGAGAGCAAAAATCGACAGGATAACTAAAGATTGTCAAACTTGTTCG
ATGAAACATTAAAAGACTCGACATGATTATAGGTTATGGGGTCTTTAGAA
GACATCCTTAAAAAACTCAACAGGATCTTTCCCACCCTTGCGAGCCAGGG
CCGATGATAAACGATTCTGCGACTTAAAGAGGCCAGTCAACGCGTCCATC
AGAATCATCAATAGCGTAAGGGGGTTAGATAAGCCATGGGGTCGAGGGTG
GATCTTTCCAAC

Coding sequence (CDS) from alignment at sc0000090:374270..376981-

>TCONS_00009141 ID=TCONS_00009141|Name=TCONS_00009141|organism=Clytia hemisphaerica|type=CDS|length=4104bp|location=Sequence derived from alignment at sc0000090:374270..376981- (Clytia hemisphaerica)
GACAAGAGAATTGCGTTACTTTATCGGAGCAAAATTCGACACAGCAACAC
TAAAGTTGATTTGGGATAATGGCAGCAAGTCACTAGTCCGAAATTGGTGT
TCTAGCCCACCCTCCATTGACAACCCCAATCATTTGGACCCAGTCCCTGA
ACAATGCGTCATGGTGACGTCATCCGGTTGTTGGGTGTTGCAGGATTGCC
AGAGTGGGCCACCAAAGTTTCGTAATTACATCTGTGACTTTGACCGGAGA
GGAAGCCTTAATAGTGAAAATAACGATCAGCTCTTAACGTTGGTCAATGT
ACTGAGAGCAAAAATCGACAGGATAACTAAAGATTGTCAAACTTGTTCGA
TGAAACATTAACAATGCACAAGGCGAGGTTGTGCTTGGTGGTACCCTCAC
TATCACAATACCTGTAAATACTGATGGTACAGAAGTTAACCCTTTGATAC
CGACCCCTCAAGATGGGTTTATAAGCTCTATAAACGTTGGTGATTCTACA
TTCAATGATATCTCATCTGTATCATATATCGACAATACACCTTATGAATA
TCTCTGCAAATTCGTTTACCATGGCAACAGTAAAGCTTACATCACTTTTA
AAGGAGTGCTTGATGGTGGTGAAACTATTGACCGAGAGGAGATTGATTGT
GGTGAGAATGGACAACTGAAAACATTCACCAATTTCAACAAAGTTGCCAG
AATTACCAAAGAACTTAGTTTGAGATAATGGTTACATTTTCACTTATGTA
CCACAAAAATTGCTTCCCTTCGATGGAATATTAGATTGCAACGCCCGAGG
AGGTCATTTAGCCACCCTTCAAACTCTAGATGATTTGGTTGTATCCGAAG
GATTAATAGCAAGGAACGCGTTAACAACATTCGTTCAGATTTAAACTTTA
AAGAAATGATTGTCACAACTTTCTTGGCAATTTTAATTTCTTCGAGGATT
TCCAAATCTTCCTCAGTGAACACAAAGAACATTCCGTGTGAAGATTATAT
CGCTGGTGACCGTTTCTCTGCTTGCCGACAAGAGAATTGCGTTACTTTAT
CGGAGCAAAATTCGACACAGCAACACTAAAGTTGATTTGGGATAATGGCA
GCAAGTCACTAGTCCGAAATTGGTGTTCTAGCCCACCCTCCATTGACAAC
CCCAATCATTTGGACCCAGTCCCTGAACAATGCGTCATGGTGACGTCATC
CGGTTGTTGGGTGTTGCAGGATTGCCAGAGTGGGCCACCAAAGTTTCGTA
ATTACATCTGTGACTTTGACCGGAGAGGAAGCCTTAATAGTGAAAATAAC
GATCAGCTCTTAACGTTGGTCAATGTACTGAGAGCAAAAATCGACAGGAT
AACTAAAGATTGTCAAACTTGTTCGATGAAACATTAACAATGCACAAGGC
GAGGTTGTGCTTGGTGGTACCCTCACTATCACAATACCTGTAAATACTGA
TGGTACAGAAGTTAACCCTTTGATACCGACCCCTCAAGATGGGTTTATAA
GCTCTATAAACGTTGGTGATTCTACATTCAATGATATCTCATCTGTATCA
TATATCGACAATACACCTTATGAATATCTCTGCAAATTCGTTTACCATGG
CAACAGTAAAGCTTACATCACTTTTAAAGGAGTGCTTGATGGTGGTGAAA
CTATTGACCGAGAGGAGATTGATTGTGGTGAGAATGGACAACTGAAAACA
TTCACCAATTTCAACAAAGTTGCCAGAATTACCAAAGAACTTAGTTTGAG
ATAATGGTTACATTTTCACTTATGTACCACAAAAATTGCTTCCCTTCGAT
GGAATATTAGATTGCAACGCCCGAGGAGGTCATTTAGCCACCCTTCAAAC
TCTAGATGATTTGGTTGTATCCGAAGGATTAATAGCAAGGAACGCGTTAA
CAACATTCGTTCAGATTTAAACTTTAAAGAAATGATTGTCACAACTTTCT
TGGCAATTTTAATTTCTTCGAGGATTTCCAAATCTTCCTCAGTGAACACA
AAGAACATTCCGTGTGAAGATTATATCGCTGGTGACCGTTTCTCTGCTTG
CCGACAAGAGAATTGCGTTACTTTATCGGAGCAAAATTCGACACAGCAAC
ACTAAAGTTGATTTGGGATAATGGCAGCAAGTCACTAGTCCGAAATTGGT
GTTCTAGCCCACCCTCCATTGACAACCCCAATCATTTGGACCCAGTCCCT
GAACAATGCGTCATGGTGACGTCATCCGGTTGTTGGGTGTTGCAGGATTG
CCAGAGTGGGCCACCAAAGTTTCGTAATTACATCTGTGACTTTGACCGGA
GAGGAAGCCTTAATAGTGAAAATAACGATCAGCTCTTAACGTTGGTCAAT
GTACTGAGAGCAAAAATCGACAGGATAACTAAAGATTGTCAAACTTGTTC
GATGAAACATTAACAATGCACAAGGCGAGGTTGTGCTTGGTGGTACCCTC
ACTATCACAATACCTGTAAATACTGATGGTACAGAAGTTAACCCTTTGAT
ACCGACCCCTCAAGATGGGTTTATAAGCTCTATAAACGTTGGTGATTCTA
CATTCAATGATATCTCATCTGTATCATATATCGACAATACACCTTATGAA
TATCTCTGCAAATTCGTTTACCATGGCAACAGTAAAGCTTACATCACTTT
TAAAGGAGTGCTTGATGGTGGTGAAACTATTGACCGAGAGGAGATTGATT
GTGGTGAGAATGGACAACTGAAAACATTCACCAATTTCAACAAAGTTGCC
AGAATTACCAAAGAACTTAGTTTGAGATAATGGTTACATTTTCACTTATG
TACCACAAAAATTGCTTCCCTTCGATGGAATATTAGATTGCAACGCCCGA
GGAGGTCATTTAGCCACCCTTCAAACTCTAGATGATTTGGTTGTATCCGA
AGGATTAATAGCAAGGAACGCGTTAACAACATTCGTTCAGATTTAAACTT
TAAAGAAATGATTGTCACAACTTTCTTGGCAATTTTAATTTCTTCGAGGA
TTTCCAAATCTTCCTCAGTGAACACAAAGAACATTCCGTGTGAAGATTAT
ATCGCTGGTGACCGTTTCTCTGCTTGCCGACAAGAGAATTGCGTTACTTT
ATCGGAGCAAAATTCGACACAGCAACACTAAAGTTGATTTGGGATAATGG
CAGCAAGTCACTAGTCCGAAATTGGTGTTCTAGCCCACCCTCCATTGACA
ACCCCAATCATTTGGACCCAGTCCCTGAACAATGCGTCATGGTGACGTCA
TCCGGTTGTTGGGTGTTGCAGGATTGCCAGAGTGGGCCACCAAAGTTTCG
TAATTACATCTGTGACTTTGACCGGAGAGGAAGCCTTAATAGTGAAAATA
ACGATCAGCTCTTAACGTTGGTCAATGTACTGAGAGCAAAAATCGACAGG
ATAACTAAAGATTGTCAAACTTGTTCGATGAAACATTAACAATGCACAAG
GCGAGGTTGTGCTTGGTGGTACCCTCACTATCACAATACCTGTAAATACT
GATGGTACAGAAGTTAACCCTTTGATACCGACCCCTCAAGATGGGTTTAT
AAGCTCTATAAACGTTGGTGATTCTACATTCAATGATATCTCATCTGTAT
CATATATCGACAATACACCTTATGAATATCTCTGCAAATTCGTTTACCAT
GGCAACAGTAAAGCTTACATCACTTTTAAAGGAGTGCTTGATGGTGGTGA
AACTATTGACCGAGAGGAGATTGATTGTGGTGAGAATGGACAACTGAAAA
CATTCACCAATTTCAACAAAGTTGCCAGAATTACCAAAGAACTTAGTTTG
AGATAATGGTTACATTTTCACTTATGTACCACAAAAATTGCTTCCCTTCG
ATGGAATATTAGATTGCAACGCCCGAGGAGGTCATTTAGCCACCCTTCAA
ACTCTAGATGATTTGGTTGTATCCGAAGGATTAATAGCAAGGAACGCGTT
AACAACATTCGTTCAGATTTAAACTTTAAAGAAATGATTGTCACAACTTT
CTTGGCAATTTTAATTTCTTCGAGGATTTCCAAATCTTCCTCAGTGAACA
CAAAGAACATTCCGTGTGAAGATTATATCGCTGGTGACCGTTTCTCTGCT
TGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005122XLOC_005122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009141-exon-sc0000090-1575043694:376822..376981TCONS_00009141-exon-sc0000090-1575043694:376822..376981Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1575043694:376021..376162TCONS_00009141-exon-sc0000090-1575043694:376021..376162Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1575043694:375239..375601TCONS_00009141-exon-sc0000090-1575043694:375239..375601Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1575043694:374270..374830TCONS_00009141-exon-sc0000090-1575043694:374270..374830Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1510915933:376822..376981TCONS_00009141-exon-sc0000090-1510915933:376822..376981Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1510915933:376021..376162TCONS_00009141-exon-sc0000090-1510915933:376021..376162Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1510915933:375239..375601TCONS_00009141-exon-sc0000090-1510915933:375239..375601Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1510915933:374270..374830TCONS_00009141-exon-sc0000090-1510915933:374270..374830Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1491911889:376822..376981TCONS_00009141-exon-sc0000090-1491911889:376822..376981Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1491911889:376021..376162TCONS_00009141-exon-sc0000090-1491911889:376021..376162Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1491911889:375239..375601TCONS_00009141-exon-sc0000090-1491911889:375239..375601Clytia hemisphaericaexon
TCONS_00009141-exon-sc0000090-1491911889:374270..374830TCONS_00009141-exon-sc0000090-1491911889:374270..374830Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009141-proteinTCONS_00009141-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:374270..376981 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279078	0.547074	0.169082	0.115929	0.23522	0.557622	0.284075	0.653401	0.335984	0.370652	0.107586	0.795847	0.0469415	1.03605	0.522651	0.517145	0.240249	0.107367	0	0.0394677	0.136694	0.148064	0.159992	0.184359	0.194907	0.0719436	0	0.223513	0.0856981	0.0812662
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
IPR001304C-type_lectin-like
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top