|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009136 ID=TCONS_00009136|Name=TCONS_00009136|organism=Clytia hemisphaerica|type=transcript|length=3927bpRun BLAST on NCBI protein sequence of TCONS_00009136-protein >TCONS_00009136-protein ID=TCONS_00009136-protein|Name=TCONS_00009136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=932bp MANHDSLDYDQVHRDDFDIDDGGNDELDDEKLQNLILDKAPPPERWYHGRRun BLAST on NCBI transcript from alignment at sc0000090:256904..291397- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009136 ID=TCONS_00009136|Name=TCONS_00009136|organism=Clytia hemisphaerica|type=transcript|length=34494bp|location=Sequence derived from alignment at sc0000090:256904..291397- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000090:256904..291397- >TCONS_00009136 ID=TCONS_00009136|Name=TCONS_00009136|organism=Clytia hemisphaerica|type=CDS|length=67176bp|location=Sequence derived from alignment at sc0000090:256904..291397- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009136 vs. Swiss-Prot (Human)
Match: RASA1 (Ras GTPase-activating protein 1 OS=Homo sapiens GN=RASA1 PE=1 SV=1) HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0 Identity = 390/900 (43.33%), Postives = 552/900 (61.33%), Query Frame = 1
Query: 205 APPPERWYHGRLGRKGAEEFLLKNNTPCAYLVRESDRKPGMYSLSYLSSTKNLSHFRITAICGDFYIGGRKFQSLQHLIGYYSTYGNLVKNEKLQSPVASLEPVHLAYRVVAKFPFTGSTDTDELSFVAGDVFAVQNEIDDDWMWVVSQNDNKSGLVPKALTEALGPDADPFEGQSWFVA-VDKHDAETILMNYGEVGNFIIRPSQNQ-GDYSLCLRERTQTLRFLIKRT-GQQFSLGGRSFNSIEDIISRYKKEQLAEGVSLSRPLERVRYEPFLRNAQGSMRTREQHNGGLPRIPPPRLNSRLSDTGF--VTKSGFLIKKGNRNKWKRLYMVLKGDEQQLLYFENEKRA-KPKGLFDLSYASVYTVHDSLFGRPNCFQIVVRALNETQTHF-LCTETSDQAQEWLEAIGPFCGSMNKQNQRKISQQNAIKELRSLEITICH---AQKIPVNKLPHPYCVVSLNDIKTCRTQAKEAPEPVFDEEFKFEDLPNDITSFTVSMYTRKTGPYTKDKEMARVTVNLNTMEPGKALDNWHSLTS--AQHKSDMGSVRITAKFKHEIIMPVEEYSKLTEVLLSRDYAFVQSLGEV-SKDLNSLAFTLLKIFRQSSQDEHEEIQ--LIKTITSRELNNREKKETLFRGNTLATKLMDQYMKMVAIPYLQKTIKSVILKIMESRQNCELNPSRIEKGSNVAENLQQLIKFLEEITSNVFNSKQDCPKHLRYLFYCLQTEAKSVWPDEPEIPSRVVSAFLFLRLIVPAVLNPKMHNLVGESPSPMASRTLTLVAMCLQKLANLVEFGAKEPYLVVVNPFLKKYRSKMIDFLDDISNYSHPPSKMTEQNINKPDNTSRDLARDLASIHETCIKHDPQLQKLSSN---QAHV-KILLAIVEGVKQRKEQY 2847
APP +WYHG+L R AEE L + +YL+RESDR+PG + LS+LS ++HFRI A+CGD+YIGGR+F SL LIGYYS L+K EKL PVA EPV RV A P+T DTDE+SF+ GD+F V NE++D WMWV + ++ GL+ + L E +G + DP EG+ WF + K +A +LM G+V +F++RPS N GDYSL R RF I T QF +GGR +NSI DII Y+KEQ+ EG L P+ E L + ++ +E +N + + D + + K G+L+KKG +WK LY +L+G + QL+YFE+EKRA KPKGL DLS SVY VHDSLFGRPNCFQIVV+ +E F ET +QA++W++ + FC N RK S + K LR + + H A K+PV +PYC + LN ++ +T A+E PV+ EEF F+DLP DI F +++ + +KD ++ + L+ ++ G A D W L+S + GS+R+ A++ E IMP EEYS+ E++L ++ V +L V +D LA LL+IF HE+++ L+ T+ RE++ ++ TLFR TLA+ LM+QYMK A ++ +K ILKIMES+Q+CEL+PS++EK +V NL L+ L E+ +F + + P LRY++ CLQ + WP + +RVVS F+FLRLI PA+LNP+M N++ +SPSP+A+RTL LVA +Q LANLVEFGAKEPY+ VNPF+K + +MI FLD++ N P + +++ DL+RDLA++HE C+ H +L+ LS+ Q HV K LLAI E ++Q++ QY
Sbjct: 175 APPTNQWYHGKLDRTIAEERLRQAGKSGSYLIRESDRRPGSFVLSFLSQMNVVNHFRIIAMCGDYYIGGRRFSSLSDLIGYYSHVSCLLKGEKLLYPVAPPEPVEDRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQDQEQVLND---TVDGKEIYN---------TIRRKTKDAFYKNIVKKGYLLKKGKGKRWKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSVYVVHDSLFGRPNCFQIVVQHFSEEHYIFYFAGETPEQAEDWMKGLQAFC------NLRKSSPGTSNKRLRQVSSLVLHIEEAHKLPVKHFTNPYCNIYLNSVQVAKTHAREGQNPVWSEEFVFDDLPPDINRFEITLSNKTKK--SKDPDILFMRCQLSRLQKGHATDEWFLLSSHIPLKGIEPGSLRVRARYSMEKIMPEEEYSEFKELILQKELHVVYALSHVCGQDRTLLASILLRIFL------HEKLESLLLCTLNDREISMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSKLEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTRVVSGFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYMEGVNPFIKSNKHRMIMFLDELGNVPELP--------DTTEHSRTDLSRDLAALHEICVAHSDELRTLSNERGAQQHVLKKLLAITELLQQKQNQY 1040 The following BLAST results are available for this feature:
BLAST of TCONS_00009136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.