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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009135 ID=TCONS_00009135|Name=TCONS_00009135|organism=Clytia hemisphaerica|type=transcript|length=3226bpRun BLAST on NCBI protein sequence of TCONS_00009135-protein >TCONS_00009135-protein ID=TCONS_00009135-protein|Name=TCONS_00009135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=818bp MKFPDKKSMRYLFILTLLFLELVESSSGNLNLFIYKXILELVESSSGNLNRun BLAST on NCBI transcript from alignment at sc0000090:230773..248005- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009135 ID=TCONS_00009135|Name=TCONS_00009135|organism=Clytia hemisphaerica|type=transcript|length=17233bp|location=Sequence derived from alignment at sc0000090:230773..248005- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000090:230773..248005- >TCONS_00009135 ID=TCONS_00009135|Name=TCONS_00009135|organism=Clytia hemisphaerica|type=CDS|length=29484bp|location=Sequence derived from alignment at sc0000090:230773..248005- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009135 vs. Swiss-Prot (Human)
Match: UFO (Tyrosine-protein kinase receptor UFO OS=Homo sapiens GN=AXL PE=1 SV=3) HSP 1 Score: 213.772 bits (543), Expect = 3.936e-57 Identity = 102/278 (36.69%), Postives = 178/278 (64.03%), Query Frame = 1
Query: 1891 LIMGKHPVGKGGVTNNVYQGKLKE--IDKDDNIKFTPVVIKKLVPSPEDNNTMSKFINEALLMKKLRHKNLMELVGVLLRPNE-----SPVLVMPFMRYADLNQFLRNARGTPRRHQTISTRQLVNFAVQISSGMEYLSSMKYVHRDLSTRNCILGEDFEVKISNLGLARDI-SKENYRMNKKTRLPIKWMAPESLTQFVFSEKSDVWSYGIVLWEIISLGKQPYSGLDNTQVQDFLTKGKRLERPTNCPDEFFHLMSLCWIQSPHDRPSFKDLHKEM 2700
+++ +H V G G + E +++DD+I V +K + + + + F++EA+ MK+ H N+M L+GV + +E +PV+++PFM++ DL+ FL +R + + T+ LV F I+SGMEYLS+ +++HRDL+ RNC+L E+ V +++ GL++ I + + YR + ++P+KW+A ESL V++ KSDVWS+G+ +WEI + G+ PY G++N+++ D+L +G RL++P +C D + LMS CW +P DRPSF +L +++
Sbjct: 529 VMVDRHKVALGKTLGEGEFGAVMEGQLNQDDSI--LKVAVKTMKIAICTRSELEDFLSEAVCMKEFDHPNVMRLIGVCFQGSERESFPAPVVILPFMKHGDLHSFLLYSR-LGDQPVYLPTQMLVKFMADIASGMEYLSTKRFIHRDLAARNCMLNENMSVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRLKQPADCLDGLYALMSRCWELNPQDRPSFTELREDL 803 The following BLAST results are available for this feature:
BLAST of TCONS_00009135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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