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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009132 ID=TCONS_00009132|Name=TCONS_00009132|organism=Clytia hemisphaerica|type=transcript|length=3593bpRun BLAST on NCBI protein sequence of TCONS_00009132-protein >TCONS_00009132-protein ID=TCONS_00009132-protein|Name=TCONS_00009132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp MSVSNQSDFLTSFSDDDNDIDDAINASPVHEISYEGTLSKWTNYLHGWQSRun BLAST on NCBI transcript from alignment at sc0000090:163060..200605- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009132 ID=TCONS_00009132|Name=TCONS_00009132|organism=Clytia hemisphaerica|type=transcript|length=37546bp|location=Sequence derived from alignment at sc0000090:163060..200605- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000090:163060..200605- >TCONS_00009132 ID=TCONS_00009132|Name=TCONS_00009132|organism=Clytia hemisphaerica|type=CDS|length=23556bp|location=Sequence derived from alignment at sc0000090:163060..200605- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009132 vs. Swiss-Prot (Human)
Match: C43BP (Collagen type IV alpha-3-binding protein OS=Homo sapiens GN=COL4A3BP PE=1 SV=1) HSP 1 Score: 489.96 bits (1260), Expect = 4.325e-158 Identity = 270/611 (44.19%), Postives = 380/611 (62.19%), Query Frame = 1
Query: 241 GTLSKWTNYLHGWQSRFLTLQDGTLSYYKSKFDTGYGCRGSVSVAKASIEVHEFDNCRFDVNVGDCVYYLRADEPTEKQNWVEILESAKQAESGYGSEPHLPK---AVXXXXXXXXXXXXXXXXFQKSAGLREKLMEMETFRDILCRQTDTLQTYFDSCADGNAGNNSTQKXXXXXXXXXXXXMAATPTPSSFIRGGSTTTANPS-----------HAIDFRGEAITFKATTAGVIQVLSHCIDLMTKREEQWKRKLEREQEKIRKLKEQLKDKPSIDMADNQFSGPDFMEGPNMKLNEEQFFDAVDTALXXXXX-XXXXXXXXXXXXIPPPKPTSEIMSAPK---------------------------HKYSKMLETKVKENLVLIQEQVEAENTEWYNVYEDGDLKVYRKDVEIEGLVCDPLKASHIIHGVSGHEMCHYFFDKDVRLDWEVTVEKVKMIEKLSENTAIFQQIHKRIWPSAQRDTCFISHIRQLGKEDNVERMDKEVERPWTVQNISMEHEKVP-NDKFVRAVANVVMLCQTYTIGDVKKKKYTRENIACKLTYMAQVNPGGWAPASAIRQVAKREYPKFLRKFSSYVQTVTADKPLML 1944
G LSKWTNY+HGWQ R++ L++ LSYYKS+ +T YGCRGS+ ++KA I H+FD CRFD++V D V+YLRA +P +Q W++ +E K ESGYGSE L + VS +S +S S S+SSF+K LREKL EMETFRDILCRQ DTLQ YFD+CAD + K +L+ + DD PT S +T N + IDF+GEAITFKATTAG++ LSHCI+LM KRE+ W+++L++E EK R+ +E K+ + + F GPD+ EGPN +NEE+FFDAV+ ALD +D+ + + + P P+ + S+ H++S +E V+ ++ + V + W V E+G++KVYR++VE G+V DPLKA+H + GV+GHE+C+YF++ DVR DWE T+E ++E L++N I Q HKR+WP++QRD ++S IR++ + D E W V N S++H+ P N++ VRA NV M+CQT ++ +R+NI CK+TY+A VNPGGWAPAS +R VAKREYPKFL++F+SYVQ TA KP++
Sbjct: 28 GVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK-TESGYGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQKYFDACAD------AVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKKKSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFSSVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGD-ANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPA---LTENDPET---WIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF 624 The following BLAST results are available for this feature:
BLAST of TCONS_00009132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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