TCONS_00009130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009130
Unique NameTCONS_00009130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009130 ID=TCONS_00009130|Name=TCONS_00009130|organism=Clytia hemisphaerica|type=transcript|length=1372bp
TTTATTTTGTGTTGGACTAACGCTTGGAAAGACGAACCTGGCCAGTGACT
ATATTATAAGAGATATCATAGGAAACACTAGCTCCAATCTAAAACAATGT
CGAACCTATCCACCCTTCCAATCAAATCATGTTTGAATATCAACAATATG
CTGGATGTGACAGAACACCAACGATATCTACTTGGTATGTTTTACATATT
CATCGGGCTCATTGGAGCGTTATTGAACATTCTTCCATGCTACATCGTCT
GTCGTACAAAACAGCTTAAAAACCCATCATCTAGACTAGCATATTATCTC
TCCATCTCTGACATGTTACGTTCAACACTCGGCTATCTCTTATTCGGTTT
GGAGATTATGATTAAATTTAAATGGAGATTGAAATGCTGGCAACGACAGC
TATTGACGTCACCTTTAATCTTATTCTCAATGAGTTCGGCATACCTACAT
TGTGTCATCATTCTGGACCGGTTTTTCCGgattattttcattcaaaatta
caGTACGTTTCTTACTAAAACTAAATTCGCATTAATGATGTTGACATACT
TTCTCATTGTCGGTGTTCAGTTTTCACTGACCGTTATTGGAGACGAATAC
ATGTCACAAAAACTTGGTGGTATGTTGCTAACGCTCCCATTGAATGTTAT
ATTATTCGTCACAAGTCTCTGTTTACACTTGAAATCAATTAAGGCTCTAC
ACATACACCAACAAACTGTTTGTTTGACATTGAACTcgcaaaatgttttg
aaattagctACCATCTATCTGGTCATTTTTATCATCTTTTATCTACCAAT
ATTAACAGCCAACTTATTAGTCCTATTCCAGACATACCTGTCTATGTCCG
ACAAACTGTTGTCCGCCTACATCATTACCACACTCGCCGTATCAGCGTTC
AGCAGTCCCGTAAATGCCATTGCGTTCACCGTAAAGAATATTCAAGCACG
TAAGACAATACGTAAACAATACGATCGCATACGAAAGTCAACATTTCCAC
GGCCTTCCAATAAAGTGGCTAGTGGGCCATCAGCGCAACCTGACGCAGTT
TATTGAATCAGTTGTGATCTCTCACTACTCGACTAGATCAGGCTACCCCT
ATATTAGGAAGCTTGCCCAGTCATCAACGGTgcgtttcgaatgttttgaa
attcgaacgttcgaaaatctaaggTAAATTGGAAAACAACATGGCGGACG
TGTTTGACTtcaaaactggacacacttTCACGGGAAATGTGTGAACAGTT
AGCCTATCTAGTGTGTATTTCAGCATGATGTCGAGTGATAAAGTCGACAA
ACCATTCTTTCATCTTACTTCAACTTTATGAAAGACTGTGAAGACAATAA
TACCCCGGAAATTGGACCTTAT
Run BLAST on NCBI

protein sequence of TCONS_00009130-protein

>TCONS_00009130-protein ID=TCONS_00009130-protein|Name=TCONS_00009130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MSNLSTLPIKSCLNINNMLDVTEHQRYLLGMFYIFIGLIGALLNILPCYI
VCRTKQLKNPSSRLAYYLSISDMLRSTLGYLLFGLEIMIKFKWRLKCWQR
QLLTSPLILFSMSSAYLHCVIILDRFFRIIFIQNYSTFLTKTKFALMMLT
YFLIVGVQFSLTVIGDEYMSQKLGGMLLTLPLNVILFVTSLCLHLKSIKA
LHIHQQTVCLTLNSQNVLKLATIYLVIFIIFYLPILTANLLVLFQTYLSM
SDKLLSAYIITTLAVSAFSSPVNAIAFTVKNIQARKTIRKQYDRIRKSTF
PRPSNKVASGPSAQPDAVY
Run BLAST on NCBI

transcript from alignment at sc0000090:139760..141300-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009130 ID=TCONS_00009130|Name=TCONS_00009130|organism=Clytia hemisphaerica|type=transcript|length=1541bp|location=Sequence derived from alignment at sc0000090:139760..141300- (Clytia hemisphaerica)
TTTATTTTGTGTTGGACTAACGCTTGGAAAGACGAACCTGGCCAGTGACT
ATATTATAAGAGATATCATAGGAAACACTAGCTCCAATCTAAAACAATGT
CGAACCTATCCACCCTTCCAATCAAATCATGTTTGAATATCAACAATATG
CTGGATGTGACAGAACACCAACGATATCTACTTGGTATGTTTTACATATT
CATCGGGCTCATTGGAGCGTTATTGAACATTCTTCCATGCTACATCGTCT
GTCGTACAAAACAGCTTAAAAACCCATCATCTAGACTAGCATATTATCTC
TCCATCTCTGACATGTTACGTTCAACACTCGGCTATCTCTTATTCGGTTT
GGAGATTATGATTAAATTTAAATGGAGATTGAAATGCTGGCAACGACAGC
TATTGACGTCACCTTTAATCTTATTCTCAATGAGTTCGGCATACCTACAT
TGTGTCATCATTCTGGACCGGTTTTTCCGGATTATTTTCATTCAAAATTA
CAGTACGTTTCTTACTAAAACTAAATTCGCATTAATGATGTTGACATACT
TTCTCATTGTCGGTGTTCAGTTTTCACTGACCGTTATTGGAGACGAATAC
ATGTCACAAAAACTTGGTGGTATGTTGCTAACGCTCCCATTGAATGTTAT
ATTATTCGTCACAAGTCTCTGTTTACACTTGAAATCAATTAAGGCTCTAC
ACATACACCAACAAACTGTTTGTTTGACATTGAACTCGCAAAATGTTTTG
AAATTAGCTACCATCTATCTGGTCATTTTTATCATCTTTTATCTACCAAT
ATTAACAGCCAACTTATTAGTCCTATTCCAGACATACCTGTCTATGTCCG
ACAAACTGTTGTCCGCCTACATCATTACCACACTCGCCGTATCAGCGTTC
AGCAGTCCCGTAAATGCCATTGCGTTCACCGTAAAGAATATTCAAGCACG
TAAGACAATACGTAAACAATACGATCGCATACGAAAGTCAACATTTCCAC
GGCCTTCCAATAAAGTGGCTAGTGGGCCATCAGCGCAACCTGAATCATCA
CCTCGGCCTACTTAACCCCTCAAACATCTAAGGATGTAAAGACGAATCAA
AGAGACAGCTCTCGATTTCAACGCACTAATACTCGGACGGTATCGTAGTT
AGACGAATAACCTACACTGTAGGTTTGTTTTTTATACTAGTGCCATCGTG
TGCTGCAATGACCGCAGTTTATTGAATCAGTTGTGATCTCTCACTACTCG
ACTAGATCAGGCTACCCCTATATTAGGAAGCTTGCCCAGTCATCAACGGT
GCGTTTCGAATGTTTTGAAATTCGAACGTTCGAAAATCTAAGGTAAATTG
GAAAACAACATGGCGGACGTGTTTGACTTCAAAACTGGACACACTTTCAC
GGGAAATGTGTGAACAGTTAGCCTATCTAGTGTGTATTTCAGCATGATGT
CGAGTGATAAAGTCGACAAACCATTCTTTCATCTTACTTCAACTTTATGA
AAGACTGTGAAGACAATAATACCCCGGAAATTGGACCTTAT

Coding sequence (CDS) from alignment at sc0000090:139760..141300-

>TCONS_00009130 ID=TCONS_00009130|Name=TCONS_00009130|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0000090:139760..141300- (Clytia hemisphaerica)
CGCAGTTTATTGAATGTCGAACCTATCCACCCTTCCAATCAAATCATGTT
TGAATATCAACAATATGCTGGATGTGACAGAACACCAACGATATCTACTT
GGTATGTTTTACATATTCATCGGGCTCATTGGAGCGTTATTGAACATTCT
TCCATGCTACATCGTCTGTCGTACAAAACAGCTTAAAAACCCATCATCTA
GACTAGCATATTATCTCTCCATCTCTGACATGTTACGTTCAACACTCGGC
TATCTCTTATTCGGTTTGGAGATTATGATTAAATTTAAATGGAGATTGAA
ATGCTGGCAACGACAGCTATTGACGTCACCTTTAATCTTATTCTCAATGA
GTTCGGCATACCTACATTGTGTCATCATTCTGGACCGGTTTTTCCGGATT
ATTTTCATTCAAAATTACAGTACGTTTCTTACTAAAACTAAATTCGCATT
AATGATGTTGACATACTTTCTCATTGTCGGTGTTCAGTTTTCACTGACCG
TTATTGGAGACGAATACATGTCACAAAAACTTGGTGGTATGTTGCTAACG
CTCCCATTGAATGTTATATTATTCGTCACAAGTCTCTGTTTACACTTGAA
ATCAATTAAGGCTCTACACATACACCAACAAACTGTTTGTTTGACATTGA
ACTCGCAAAATGTTTTGAAATTAGCTACCATCTATCTGGTCATTTTTATC
ATCTTTTATCTACCAATATTAACAGCCAACTTATTAGTCCTATTCCAGAC
ATACCTGTCTATGTCCGACAAACTGTTGTCCGCCTACATCATTACCACAC
TCGCCGTATCAGCGTTCAGCAGTCCCGTAAATGCCATTGCGTTCACCGTA
AAGAATATTCAAGCACGTAAGACAATACGTAAACAATACGATCGCATACG
AAAGTCAACATTTCCACGGCCTTCCAATAAAGTGGCTAGTGGGCCATCAG
CGCAACCTGACGCAGTTTATTGAATGTCGAACCTATCCACCCTTCCAATC
AAATCATGTTTGAATATCAACAATATGCTGGATGTGACAGAACACCAACG
ATATCTACTTGGTATGTTTTACATATTCATCGGGCTCATTGGAGCGTTAT
TGAACATTCTTCCATGCTACATCGTCTGTCGTACAAAACAGCTTAAAAAC
CCATCATCTAGACTAGCATATTATCTCTCCATCTCTGACATGTTACGTTC
AACACTCGGCTATCTCTTATTCGGTTTGGAGATTATGATTAAATTTAAAT
GGAGATTGAAATGCTGGCAACGACAGCTATTGACGTCACCTTTAATCTTA
TTCTCAATGAGTTCGGCATACCTACATTGTGTCATCATTCTGGACCGGTT
TTTCCGGATTATTTTCATTCAAAATTACAGTACGTTTCTTACTAAAACTA
AATTCGCATTAATGATGTTGACATACTTTCTCATTGTCGGTGTTCAGTTT
TCACTGACCGTTATTGGAGACGAATACATGTCACAAAAACTTGGTGGTAT
GTTGCTAACGCTCCCATTGAATGTTATATTATTCGTCACAAGTCTCTGTT
TACACTTGAAATCAATTAAGGCTCTACACATACACCAACAAACTGTTTGT
TTGACATTGAACTCGCAAAATGTTTTGAAATTAGCTACCATCTATCTGGT
CATTTTTATCATCTTTTATCTACCAATATTAACAGCCAACTTATTAGTCC
TATTCCAGACATACCTGTCTATGTCCGACAAACTGTTGTCCGCCTACATC
ATTACCACACTCGCCGTATCAGCGTTCAGCAGTCCCGTAAATGCCATTGC
GTTCACCGTAAAGAATATTCAAGCACGTAAGACAATACGTAAACAATACG
ATCGCATACGAAAGTCAACATTTCCACGGCCTTCCAATAAAGTGGCTAGT
GGGCCATCAGCGCAACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005115XLOC_005115Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009130-proteinTCONS_00009130-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009130-exon-sc0000090-1575043694:140258..141300TCONS_00009130-exon-sc0000090-1575043694:140258..141300Clytia hemisphaericaexon
TCONS_00009130-exon-sc0000090-1575043694:139760..140088TCONS_00009130-exon-sc0000090-1575043694:139760..140088Clytia hemisphaericaexon
TCONS_00009130-exon-sc0000090-1510915933:140258..141300TCONS_00009130-exon-sc0000090-1510915933:140258..141300Clytia hemisphaericaexon
TCONS_00009130-exon-sc0000090-1510915933:139760..140088TCONS_00009130-exon-sc0000090-1510915933:139760..140088Clytia hemisphaericaexon
TCONS_00009130-exon-sc0000090-1491911889:140258..141300TCONS_00009130-exon-sc0000090-1491911889:140258..141300Clytia hemisphaericaexon
TCONS_00009130-exon-sc0000090-1491911889:139760..140088TCONS_00009130-exon-sc0000090-1491911889:139760..140088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:139760..141300 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0610107	0.0297475	0.552636	0.709627	0.534797	0.552635	1.45112	1.43195	1.6195	1.14629	1.11262	1.30025	0.182593	0.294972	0.138576	0.260248	0.183202	0.258192	0.129712	0.169667	0.117977	0.172636	0.139907	0.349789	0.360275	0.49692	0.0836578	0.133923	0.0677172	0.137986
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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