TCONS_00009129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009129
Unique NameTCONS_00009129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009129 ID=TCONS_00009129|Name=TCONS_00009129|organism=Clytia hemisphaerica|type=transcript|length=861bp
aaaaaagtatcGATTTGCCAACGAAATAAGATGTCATCACCAAAAGTGCC
TAAACAAAATGTACACACAAGACAACTGGTTGACGAAAGGGTGGTAAAAA
TCAAGAAGGGTTATGAAGAAGAcattgaaaaattgaccaatgaAATTGAA
GGAGTAAAACTTGAAATGAACAGAGATGAAAAAGTCTACAGAAAGAATgt
ggaaaaacttaaaaatgaatATCACGAAACAAGAGATATTATAGACAATG
TGAAAGGCCAGATTGAagatatcaaaatgaaaattggaCCGCATGAGGAT
ATAGAACATATGGTTTGGGGAGCTGAGACATTCTTCCAAGGAAAGAAATC
GAGTCATAGTTTATACGACTCTTATGAGGAATGGTTTAAGGGGATTTCGA
AAATGATGGAAGACAATACTCCGTACAGGACATCAAAATATATCTTCATG
AAACGAGATTCACTCTGTCTTGAAAGTTTACCTGACTCGTATACGCATTA
TATTTTTACGGGAATCGAGAGCGATGATCCCTGGGATGCTTTTGATTATG
GTGATGATAATACCTttatgtttgaagatctttacAGAGGATTATGGGAA
AAAGCCAGTTTGGTGTTACTCCATCCGCAGAAAGTTGAACTTTGTTTGGA
ATTCGAAAGAACATGTCATGAAACAGACATTTATAACAATTATAGTGAAT
GGTGTGTTGATGGTGTCACCAATGATTTTCATGAGCCACGTTTTGCAATG
ATGGTAggaattttaaataaaatcagTGAATGATGTGATCACTATAtgga
atctttttgaaaacatttctaGATACAGTTATATATACTCTATCCAATTC
GATCATTCAGG
Run BLAST on NCBI

transcript from alignment at sc0000090:118275..119135-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009129 ID=TCONS_00009129|Name=TCONS_00009129|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at sc0000090:118275..119135- (Clytia hemisphaerica)
AAAAAAGTATCGATTTGCCAACGAAATAAGATGTCATCACCAAAAGTGCC
TAAACAAAATGTACACACAAGACAACTGGTTGACGAAAGGGTGGTAAAAA
TCAAGAAGGGTTATGAAGAAGACATTGAAAAATTGACCAATGAAATTGAA
GGAGTAAAACTTGAAATGAACAGAGATGAAAAAGTCTACAGAAAGAATGT
GGAAAAACTTAAAAATGAATATCACGAAACAAGAGATATTATAGACAATG
TGAAAGGCCAGATTGAAGATATCAAAATGAAAATTGGACCGCATGAGGAT
ATAGAACATATGGTTTGGGGAGCTGAGACATTCTTCCAAGGAAAGAAATC
GAGTCATAGTTTATACGACTCTTATGAGGAATGGTTTAAGGGGATTTCGA
AAATGATGGAAGACAATACTCCGTACAGGACATCAAAATATATCTTCATG
AAACGAGATTCACTCTGTCTTGAAAGTTTACCTGACTCGTATACGCATTA
TATTTTTACGGGAATCGAGAGCGATGATCCCTGGGATGCTTTTGATTATG
GTGATGATAATACCTTTATGTTTGAAGATCTTTACAGAGGATTATGGGAA
AAAGCCAGTTTGGTGTTACTCCATCCGCAGAAAGTTGAACTTTGTTTGGA
ATTCGAAAGAACATGTCATGAAACAGACATTTATAACAATTATAGTGAAT
GGTGTGTTGATGGTGTCACCAATGATTTTCATGAGCCACGTTTTGCAATG
ATGGTAGGAATTTTAAATAAAATCAGTGAATGATGTGATCACTATATGGA
ATCTTTTTGAAAACATTTCTAGATACAGTTATATATACTCTATCCAATTC
GATCATTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005114XLOC_005114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009129-exon-sc0000090-1575043694:118275..119135TCONS_00009129-exon-sc0000090-1575043694:118275..119135Clytia hemisphaericaexon
TCONS_00009129-exon-sc0000090-1510915933:118275..119135TCONS_00009129-exon-sc0000090-1510915933:118275..119135Clytia hemisphaericaexon
TCONS_00009129-exon-sc0000090-1491911889:118275..119135TCONS_00009129-exon-sc0000090-1491911889:118275..119135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:118275..119135 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0848132	0	0	0.0658478	4.60109	3.57616	6.58182	7.88264	6.63995	6.06771	8.86078	5.78777	6.26458	4.94801	0.939826	2.75181	0.831533	0.897422	4.56916	4.95347	4.21817	4.40889	0.658572	0.199565	2.4809	2.33207	0.422271	0	0.429415	0.257411
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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