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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009128 ID=TCONS_00009128|Name=TCONS_00009128|organism=Clytia hemisphaerica|type=transcript|length=3294bp
tttttgtttcatgggacaaaaagtgagggaaatacccaaaagacacgctg
attttgtcccagggacaaaagtgagagacaCACAAATGTTGTTAAAATTG
TTGTCGATTTCACTTGGGGTGgtgacacgagaaagcgtttcaggttggtg
ggatggagcatgttgcattgcaccaacgcgaaaaaacttctcgtgtcccc
aagcctttagatTCGTAAATTACTTTTGTaagtaaaatatattttgtagT
AACCCACCATAATAAAACTGTTCGGCTTTTACTTAGTGTAGTCCCAGAAA
AGTATGCTTGAAAATGAATCAGTGTGGTTATAATAGTGAGTTTATGCACT
TTTGAGGACTGCTTTTCTCCACCCTTTGAAATTTCCCTTCTCCCTAGCAA
CTACATAAACTTGTTAATAAAATTCATTAGGATAGGGATTGACTAAGAAT
AATTTTTGTATTTCAGTTATAGCAAGGAATAATATAAATAAAACGCAGCC
TAATAAGTGAAATTCTTTGCGGGAAACGATGAGTTCAACAAATTCAACAT
CAAACCAACGAGCTTCAAATAACGTCATCAACAAGATAGCTATGGAAGAA
ACGAAGCAGTTGAACGTAAACCACGACAAACAAATGCGTTCTTTGAAATT
GAGAAAGGCGAAACAAATCGAAGAACGAGATCGAGACCGAGATTATTATA
AAATGTTCACTGGACGAGAAGAAGAGAGATTGAAGGAGAAACAACAAGAA
CTTGAAACAGCAAAGAAAGAATTGGAGGATATTAAACTAAGAGAAAAGCA
AGAATTGGAGGGCATGAAACAGAAAGAAAACCAAGAAATGAATACTGCAG
AAAATTCTACTTCAAATGAAGGTGTTTCAATGGATCATAAGACTTTTTCA
CGATTTTACACCAAGTTCGAAAGGTTGACATGGGGTATCGAAACCTATTT
TGAGCGTATAACAAGTGATGTGAAATTATACGATTCTTATGAAGCATGGT
TTGCAGACGTATCAAAATTGATGGCTAATAGAGCTATGTATTTGAATGTT
AAACTGTTTTTCTTGAAGAAAGAATTCgagtcaaattttcaaaagaaatt
atatCTACAAGAGGTCTCAAGCGAAGAAGACAAATCAATGAACGATAAAT
TCACTTTTGAACCAGATGTTGCGAAAATAAGCAATTCATTCTGGGAGAAA
GGACACTTCGTATTGCTTCACCCAAGTCTCCAAAAAAgttgtttacattt
tgaaagttttcaggTTGCTGGATTGACGGAAGAGTATTATCATGGAGATA
AAAATTCCGCAATCATTTTCGGAACACTTGATGAGAACTTGTTGCATTAA
ACACATCATTCTTAGATTCAAAGAATATTATACTAGTATTCAAAGTTCAT
GACATTGGTATTTACTTTTAATTATCTAGTAAGTAAATTTGCGATCGCAG
TCAAGGGGGACCCAAAGGCTCCTTTTTCTTTAGCTCCCTTTTCTTTAGCT
TACTTTTCTTTAGATTACACGGAGGTAGGGGATGCCGCTTCTCCTACCTT
TTTTCAtgcccttgatccgtctctttagttgctaaATATCAAGCatgaga
ggcatcaagtaccattttgggaatctttggtatgtcCCGGCTTGGGATCG
AACCAACAACCTTGCataccgtagctggatgctctaccttcatgctacgg
tcgctaATTATCTACATGTATTCTAGAATAGAAGCACTTAGAAACTTTAT
CACAGTTATTAACTTTTAATGAGCCACGAATTGAGTTCACGAATGCACAA
GTGAGAATCTGGGATTTCTTTGTAAACCTGAAAGGTCGTTTAGCCTCTTA
TTGTTCTTCATACTGGGCAAATTCGGTTATTTCGTGCATTTAATCAGAAG
ACTACATTTTCTTTCAGATTGTTGAATATTATACTAAAAGTTATACCCTT
TTCTTTCAGCAAAATATAAAgattgaatataaaaaaattcaaatataaaT
AAAGTGTTGTTGGTAGACAAGATGTCAttatcaaaaaatcataaactaAG
CGGAGAAACAAGGAAACTTGTTGATGAAAAGGTGGAGAAAATCAAGAAGG
GTTATGATGGGAAAAttgaaagattgacaaatgaaatcgaaaaaatcaaa
ttagagataaaaagagaaaatgaCAAACACCCAGGGAAGATGAAAAAGCT
GAAAAGCGAATACCACGAAACTAGAGATGCTATAGACAATGTGAAAGGCC
AGATTGAagatatcaaaatgaaaattggaCCGCATGAGGATATAGAACAT
ATGGTTTGGGGAGCTGAGACATTCTTCCAAGGAAAGAAATCGAGTCATAG
TTTATACGACTCTTATGAGGAATGGTTTAAGGGGATTTCGAAAATGATGG
AAGACAATACTCCGTACAGGACATCAAAATATATCTTCATGAAACGAGAT
TCACTCTGTCTTGAAAGTTTACCTGACTCGTATACGCATTATATTTTTAC
GGGAATCGAGAGCGATGATCCCTGGGATGCTTTTGATTATGGTGATGATA
ATACCTttatgtttgaagatctttacAGAGGATTATGGGAAAAAGCCAGT
TTGGTGTTACTCCATCCGCAGAAAGTTGAACTTTGTTTGGAATTCGAAAG
AACATGTCATGAAACAGACATTTATAACAATTATAGTGAATGGTGTGTTG
ATGGTGTCACCAATGATTTTCATGAGCCACGTTTTGCAATGATGGTAgga
attttaaataaaatcagTGAATGATGTGATCACTATAtggaatctttttg
aaaacatttctaGATACAGTTATATATACTCTATCCAATTCGATCATTCA
GGGataaagaaatttctttcaaattagagaaagattcgagttACGAAGAG
TATTTTTAAGTATTCTACTTGTAGAGATTCGAATAAGAGAGGGCTGACTG
TTCATGCTTTTCTTACGATAAGAACGTTTCGTGAGaacatttttttcaga
aatatatGAATTTAAGAAGAAGTCTTACTTAGATTTCAGAAATGGGAATT
AAGTCATTGAGTAAGcatattataaaaaattatgtgaACAGCTTTAAGTC
TTCTAAAATTACGAAGAAGACCAGCCAAGCATCCAGCATATTGTTTTGAA
CCTTATAAAAAGGCATGTAACTATTATAATTATTGTTTTATTATAaaata
ctagccggtacccggcgtcgcacgccggtttagctgtttgctgaacgcat
ttaaagtcctttggatgttgggaaggtggcttaaacacgatgaN Run BLAST on NCBI protein sequence of TCONS_00009128-protein >TCONS_00009128-protein ID=TCONS_00009128-protein|Name=TCONS_00009128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MSSTNSTSNQRASNNVINKIAMEETKQLNVNHDKQMRSLKLRKAKQIEER
DRDRDYYKMFTGREEERLKEKQQELETAKKELEDIKLREKQELEGMKQKE
NQEMNTAENSTSNEGVSMDHKTFSRFYTKFERLTWGIETYFERITSDVKL
YDSYEAWFADVSKLMANRAMYLNVKLFFLKKEFESNFQKKLYLQEVSSEE
DKSMNDKFTFEPDVAKISNSFWEKGHFVLLHPSLQKSCLHFESFQVAGLT
EEYYHGDKNSAIIFGTLDENLLH Run BLAST on NCBI transcript from alignment at sc0000090:117833..122774- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009128 ID=TCONS_00009128|Name=TCONS_00009128|organism=Clytia hemisphaerica|type=transcript|length=4942bp|location=Sequence derived from alignment at sc0000090:117833..122774- (Clytia hemisphaerica)
TTTTTGTTTCATGGGACAAAAAGTGAGGGAAATACCCAAAAGACACGCTG
ATTTTGTCCCAGGGACAAAAGTGAGAGACACACAAATGTTGTTAAAATTG
TTGTCGATTTCACTTGGGGTGGTGACACGAGAAAGCGTTTCAGGTTGGTG
GGATGGAGCATGTTGCATTGCACCAACGCGAAAAAACTTCTCGTGTCCCC
AAGCCTTTAGATTCGTAAATTACTTTTGTAAGTAAAATATATTTTGTAGT
AACCCACCATAATAAAACTGTTCGGCTTTTACTTAGTGTAGTCCCAGAAA
AGTATGCTTGAAAATGAATCAGTGTGGTTATAATAGTGAGTTTATGCACT
TTTGAGGACTGCTTTTCTCCACCCTTTGAAATTTCCCTTCTCCCTAGCAA
CTACATAAACTTGTTAATAAAATTCATTAGGATAGGGATTGACTAAGAAT
AATTTTTGTATTTCAGTTATAGCAAGGAATAATATAAATAAAACGCAGCC
TAATAAGTGAAATTCTTTGCGGGAAACGATGAGTTCAACAAATTCAACAT
CAAACCAACGAGCTTCAAATAACGTCATCAACAAGATAGCTATGGAAGAA
ACGAAGCAGTTGAACGTAAACCACGACAAACAAATGCGTTCTTTGAAATT
GAGAAAGGCGAAACAAATCGAAGAACGAGATCGAGACCGAGATTATTATA
AAATGTTCACTGGACGAGAAGAAGAGAGATTGAAGGAGAAACAACAAGAA
CTTGAAACAGCAAAGAAAGAATTGGAGGATATTAAACTAAGAGAAAAGCA
AGAATTGGAGGGCATGAAACAGAAAGAAAACCAAGAAATGAATACTGCAG
AAAATTCTACTTCAAATGAAGGTGTTTCAATGGATCATAAGACTTTTTCA
CGATTTTACACCAAGTTCGAAAGGTTGACATGGGGTATCGAAACCTATTT
TGAGCGTATAACAAGTGATGTGAAATTATACGATTCTTATGAAGCATGGT
TTGCAGACGTATCAAAATTGATGGCTAATAGAGCTATGTATTTGAATGTT
AAACTGTTTTTCTTGAAGAAAGAATTCGAGTCAAATTTTCAAAAGAAATT
ATATCTACAAGAGGTCTCAAGCGAAGAAGACAAATCAATGAACGATAAAT
TCACTTTTGAACCAGATGTTGCGAAAATAAGCAATTCATTCTGGGAGAAA
GGACACTTCGTATTGCTTCACCCAAGTCTCCAAAAAAGTTGTTTACATTT
TGAAAGTTTTCAGGTTGCTGGATTGACGGAAGAGTATTATCATGGAGATA
AAAATTCCGCAATCATTTTCGGAACACTTGATGAGAACTTGTTGCATTAA
ACACATCATTCTTAGATTCAAAGAATATTATACTAGTATTCAAAGTTCAT
GACATTGGTATTTACTTTTAATTATCTAGTAAGTAAATTTGCGATCGCAG
TCAAGGGGGACCCAAAGGCTCCTTTTTCTTTAGCTCCCTTTTCTTTAGCT
TACTTTTCTTTAGATTACACGGAGGTAGGGGATGCCGCTTCTCCTACCTT
TTTTCATGCCCTTGATCCGTCTCTTTAGTTGCTAAATATCAAGCATGAGA
GGCATCAAGTACCATTTTGGGAATCTTTGGTATGTCCCGGCTTGGGATCG
AACCAACAACCTTGCATACCGTAGCTGGATGCTCTACCTTCATGCTACGG
TCGCTAATTATCTACATGTATTCTAGAATAGAAGCACTTAGAAACTTTAT
CACAGTTATTAACTTTTAATGAGCCACGAATTGAGTTCACGAATGCACAA
GTGAGAATCTGGGATTTCTTTGTAAACCTGAAAGGTCGTTTAGCCTCTTA
TTGTTCTTCATACTGGGCAAATTCGGTTATTTCGTGCATTTAATCAGAAG
ACTACATTTTCTTTCAGATTGTTGAATATTATACTAAAAGTTATACCCTT
TTCTTTCAGCAAAATATAAAGATTGAATATAAAAAAATTCAAATATAAAT
AAAGTGTTGTTGGTAGACAAGATGTCATTATCAAAAAATCATAAACTAAG
CGGAGAAACAAGGAAACTTGTTGATGAAAAGGTGGAGAAAATCAAGAAGG
GTTATGATGGGAAAATTGAAAGATTGACAAATGAAATCGAAAAAATCAAA
TTAGAGATAAAAAGAGAAAATGACAAACACCCAGGGAAGATGAAAAAGCT
GAAAAGCGAATACCACGAAACTAGAGATGCTATAGACAATGTGAAAGGCC
AAATTGAAGATATCAAAATGAATATTGGACCGCATGATGATATAGAACAT
ATGGTTTGGGGAGCTGAGACTTTTTTCCAAGGAAAGAAATTGAGTCATAG
TTTATACGACTCTTATGAGGAATGGTTTAAGGGAATTTCGAAAATGATGG
AAGACAATACTCCGTACAGGACATCAAAATATATCTTTATGAAACGAGAT
ATGGATTTAGACTACTTTTCCAAACATCCTGAGTTTTATAAAACTTACTT
TTTTCAAGGAGTCGAGAACGATGACCCTTGGGATGCTTTCGACTGTACAG
ATGACCATATGTTCATGTTTGAAGATCTTTACAGAGGATTATGGGAAAAA
GGTAGTTTTATATTACTCCATCCGAAGAAAATTGAGCAATGTTTGGAGTT
CGAACGTGCCTGGCATGAAACAAATAATTATAATGATTATAGCCAATGGC
AAATTGATGTCACCAGTGATTTCCATGAACCAAGTTTTGCAATGATGGTT
GGAGTCTTGAATAAAATCTCTTTGTAAATAATACAGTTTTAATACCGTAA
ATCCTCGAATAAGCGCCCTGCTTGAATATACGCCCCCTTAGGGCCTGGAA
AATTAAAAAAGCGCCCGGGCGCTTATTCGAGGATTTACGGTAATCCAAAA
TCATGGGTATTAATGTTGAGAATTTTCAAAATAGTTAGTAAAGTTATTGA
AATGGCTCATTTGCTGATAAAAATAGTTAGTATTTCGAGAGAAAAACAAC
AAGGATAGGCTTTTTCTTTTTTTCTGGCCCTCCTTTGAGCCTCAATTTTT
TCTCTTAGCATGTTTTAAAACTAAGAAAAAAATTGAGATTTTTTTAAATT
TTCACTGACAGTATTTTTTAATAACTTCACCTTAGTTCTCTTATAATCTA
GCTATTCCAGGCTCACGTGTGTTCTTAAATTGTTCTTATTTTTTGGCAGT
CTTCTTGTTCTTATAAAATTGTTCTATAAAAAGCATGTACCGTGATTCTC
ACCAAAATTGAAAATTATTAAGCAAAAATGTTGGCGAATGATAAGAAGTG
TTTGTCTTGCTTAAGGGCGCTGCTTTACAAACATCAATTTTTTCGGCGAA
TTTTTGAAATTTTCCAAGCAAATTTAGGCAAAATCGCTCTCAATGTAACG
CTCCCTTCAATGTAACGACTATCGTAACGGCTATTTACGATTATAACTTG
ATTTTTGCTTGCATTTCTTGAAGATTTCGTGTCGACCGATAAAAACAATG
CTTAACGCCCTTTTAGAATATCTTGTGTATTAAAGCGCTGTAAGAAGTTT
TACCTTGAATTTTCTAGTATATTTCTTTGATTAATTTTTAATTAAGTTTC
ACAATTAAAATTTCTCTTCTTGCAGAAAAAAAATCAAAGAAAAAAGTATC
GATTTGCCAACGAAATAAGATGTCATCACCAAAAGTGCCTAAACAAAATG
TACACACAAGACAACTGGTTGACGAAAGGGTGGTAAAAATCAAGAAGGGT
TATGAAGAAGACATTGAAAAATTGACCAATGAAATTGAAGGAGTAAAACT
TGAAATGAACAGAGATGAAAAAGTCTACAGAAAGAATGTGGAAAAACTTA
AAAATGAATATCACGAAACAAGAGATATTATAGACAATGTGAAAGGCCAG
ATTGAAGATATCAAAATGAAAATTGGACCGCATGAGGATATAGAACATAT
GGTTTGGGGAGCTGAGACATTCTTCCAAGGAAAGAAATCGAGTCATAGTT
TATACGACTCTTATGAGGAATGGTTTAAGGGGATTTCGAAAATGATGGAA
GACAATACTCCGTACAGGACATCAAAATATATCTTCATGAAACGAGATTC
ACTCTGTCTTGAAAGTTTACCTGACTCGTATACGCATTATATTTTTACGG
GAATCGAGAGCGATGATCCCTGGGATGCTTTTGATTATGGTGATGATAAT
ACCTTTATGTTTGAAGATCTTTACAGAGGATTATGGGAAAAAGCCAGTTT
GGTGTTACTCCATCCGCAGAAAGTTGAACTTTGTTTGGAATTCGAAAGAA
CATGTCATGAAACAGACATTTATAACAATTATAGTGAATGGTGTGTTGAT
GGTGTCACCAATGATTTTCATGAGCCACGTTTTGCAATGATGGTAGGAAT
TTTAAATAAAATCAGTGAATGATGTGATCACTATATGGAATCTTTTTGAA
AACATTTCTAGATACAGTTATATATACTCTATCCAATTCGATCATTCAGG
GATAAAGAAATTTCTTTCAAATTAGAGAAAGATTCGAGTTACGAAGAGTA
TTTTTAAGTATTCTACTTGTAGAGATTCGAATAAGAGAGGGCTGACTGTT
CATGCTTTTCTTACGATAAGAACGTTTCGTGAGAACATTTTTTTCAGAAA
TATATGAATTTAAGAAGAAGTCTTACTTAGATTTCAGAAATGGGAATTAA
GTCATTGAGTAAGCATATTATAAAAAATTATGTGAACAGCTTTAAGTCTT
CTAAAATTACGAAGAAGACCAGCCAAGCATCCAGCATATTGTTTTGAACC
TTATAAAAAGGCATGTAACTATTATAATTATTGTTTTATTATAAAATACT
AGCCGGTACCCGGCGTCGCACGCCGGTTTAGCTGTTTGCTGAACGCATTT
AAAGTCCTTTGGATGTTGGGAAGGTGGCTTAAACACGATGAN Coding sequence (CDS) from alignment at sc0000090:117833..122774- >TCONS_00009128 ID=TCONS_00009128|Name=TCONS_00009128|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0000090:117833..122774- (Clytia hemisphaerica)
ATGAGTTCAACAAATTCAACATCAAACCAACGAGCTTCAAATAACGTCAT
CAACAAGATAGCTATGGAAGAAACGAAGCAGTTGAACGTAAACCACGACA
AACAAATGCGTTCTTTGAAATTGAGAAAGGCGAAACAAATCGAAGAACGA
GATCGAGACCGAGATTATTATAAAATGTTCACTGGACGAGAAGAAGAGAG
ATTGAAGGAGAAACAACAAGAACTTGAAACAGCAAAGAAAGAATTGGAGG
ATATTAAACTAAGAGAAAAGCAAGAATTGGAGGGCATGAAACAGAAAGAA
AACCAAGAAATGAATACTGCAGAAAATTCTACTTCAAATGAAGGTGTTTC
AATGGATCATAAGACTTTTTCACGATTTTACACCAAGTTCGAAAGGTTGA
CATGGGGTATCGAAACCTATTTTGAGCGTATAACAAGTGATGTGAAATTA
TACGATTCTTATGAAGCATGGTTTGCAGACGTATCAAAATTGATGGCTAA
TAGAGCTATGTATTTGAATGTTAAACTGTTTTTCTTGAAGAAAGAATTCG
AGTCAAATTTTCAAAAGAAATTATATCTACAAGAGGTCTCAAGCGAAGAA
GACAAATCAATGAACGATAAATTCACTTTTGAACCAGATGTTGCGAAAAT
AAGCAATTCATTCTGGGAGAAAGGACACTTCGTATTGCTTCACCCAAGTC
TCCAAAAAAGTTGTTTACATTTTGAAAGTTTTCAGGTTGCTGGATTGACG
GAAGAGTATTATCATGGAGATAAAAATTCCGCAATCATTTTCGGAACACT
TGATGAGAACTTGTTGCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009128-exon-sc0000090-1575043694:120528..122774 | TCONS_00009128-exon-sc0000090-1575043694:120528..122774 | Clytia hemisphaerica | exon |
| TCONS_00009128-exon-sc0000090-1575043694:117833..118879 | TCONS_00009128-exon-sc0000090-1575043694:117833..118879 | Clytia hemisphaerica | exon |
| TCONS_00009128-exon-sc0000090-1510915933:120528..122774 | TCONS_00009128-exon-sc0000090-1510915933:120528..122774 | Clytia hemisphaerica | exon |
| TCONS_00009128-exon-sc0000090-1510915933:117833..118879 | TCONS_00009128-exon-sc0000090-1510915933:117833..118879 | Clytia hemisphaerica | exon |
| TCONS_00009128-exon-sc0000090-1491911889:120528..122774 | TCONS_00009128-exon-sc0000090-1491911889:120528..122774 | Clytia hemisphaerica | exon |
| TCONS_00009128-exon-sc0000090-1491911889:117833..118879 | TCONS_00009128-exon-sc0000090-1491911889:117833..118879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:117833..122774 - |
Blast
The following BLAST results are available for this feature:
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