TCONS_00009122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009122
Unique NameTCONS_00009122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009122 ID=TCONS_00009122|Name=TCONS_00009122|organism=Clytia hemisphaerica|type=transcript|length=880bp
cttttgtttgaaaggtTCCATTTTCACGGCTGACTGCACATCGAATGTTG
TTTTAAAAGAGCACAAAAATGGAGCTGATTTTCCAAGTTAGAATGTGACG
AACAAAACAAACCAAGTTTATTATTGCGAGGTCATAAAACATGACTTCTA
GCCGATCAAATCTTGATGCTGATTCATTAAGATCCATCAATTCCCAAACA
CCATTAATGAGAGGTGGAATACACATCCCTTTGATGAACAACAGTCTGGA
GTTTCCCGAATATGATTTCCTGTTCAAAATACTCATCATTGGAGATTCAG
GAACAGGGAAAAGTTCATTGTTAATCAGATTCTGTGATGACTTTTTCTCG
GACAAGTTCATCAGTACTATTGGTGTAGACTTTAAAATCAAGACGATAGC
TCTCGATGAAAAACTGGTTAAATTACAGATTTGGGATTCTGCCGGACAGG
AGCGTTTCCGCACATTAACCACTACATATTACCGCGGTGCACACGCCATT
ATTATTGTTTATGACGTCACAGATCGAAGTACTTTTGTTAATATCGGCAC
GTGGTTAGCGGAGATTAATAAAAACGCGACAGAAAACGTTATAATAGCCC
TTGTTGGAAATAAATGCGATATTCAAGAACGACAAGTTGAATACGAGGCC
GCCCGGGCGTTTGCGGACCGCCTCGGGGtgttatttttagaaaccaGCGC
CAAAAAAGATATAAATATACAACGACTTTTTAACGAATTGGCGCACGAAT
TAAAGAAGAGACTTGGTGATCCTTTAGAGAGTAAACATAACAGTAGTGAT
TTTTCGCGGACAGTAAATTTTACGGGATCGGAATGTGGCGAAAAAGACGG
ATATTTTGCGCAATGTTGTCGCATTAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00009122-protein

>TCONS_00009122-protein ID=TCONS_00009122-protein|Name=TCONS_00009122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MTSSRSNLDADSLRSINSQTPLMRGGIHIPLMNNSLEFPEYDFLFKILII
GDSGTGKSSLLIRFCDDFFSDKFISTIGVDFKIKTIALDEKLVKLQIWDS
AGQERFRTLTTTYYRGAHAIIIVYDVTDRSTFVNIGTWLAEINKNATENV
IIALVGNKCDIQERQVEYEAARAFADRLGVLFLETSAKKDINIQRLFNEL
AHELKKRLGDPLESKHNSSDFSRTVNFTGSECGEKDGYFAQCCRIR
Run BLAST on NCBI

transcript from alignment at sc0000090:657668..660984+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009122 ID=TCONS_00009122|Name=TCONS_00009122|organism=Clytia hemisphaerica|type=transcript|length=3317bp|location=Sequence derived from alignment at sc0000090:657668..660984+ (Clytia hemisphaerica)
cttttgtttgaaaggtTCCATTTTCACGGCTGACTGCACATCGAATGTTG
TTTTAAAAGAGCACAAAAATGGAGCTGATTTTCCAAGTTAGAATGTGACG
AACAAAACAAACCAAGTTTATTGTaagtttttcttctttattacTAGCCT
TAGTACACCCCCTTTCTCAtagtcataaaaacaatgagccaaaaaaataa
gaacaatttaagaacaatgctgaacCTGAAAtaactcaatttcaagcaat
tttggggttaaagtagtaaaaattgggtaaaatacctcaattacacctta
taaataagaacatgataagaacaatttgatgaTCAAagttccaaaaaaat
aagaacagctgatgagccttatcaaaaattttactggttccccactggtt
cttataaaaaaagtgtagcgCAATAACGGAAttacggactgaaactcgat
gaggatttgtttatttgattattttcagaaaattgaagtaaaatttccca
ctggggacgatatttaggccaaattttccagtgggaggggGTCCTACCAG
GTCGTTCTTTCACCAAATTTCGCCAGATGAAAACTTGCCGAATCCACTCT
TCTGCCAACTTCTTCAAGATTTGAAGTTAAACGTTGAAAGTGGTGAATGT
TTTTTTAGTAAGTGAGGCAGGGGTATTCCAAGTGACTCTATTGTGTGAAG
TAACAATGGTAGCAGTATAACCCGAAAGCGAAAATTTCTAAGAGCTATGA
GGCTGGTTTTTAAGCATTGTTAACTTGAAGGACCAAAAAGCTTAAATCCA
AGTGAAGGAGACATTCCTGTTATAAAATATTCGATTGAAGAATCATGTGG
AATAATCTTCAGAGTTGGAAATTTAGACGTTTCCCCCTCTCATCTCTCAT
TTGGATATTGGTTTATAACgacatttttttcattaatattcaagtattta
atttttttattgagagGATTTTTTATTGACGAAAAAACAGCTTGAATTTT
CTGTGAGGAGACAATGAAACTCTCAAACCTTGTTTAAAGAAAAACCCTCA
TTTTTCTCAAGTAGAACGGGACATTTAAAACACCAAAACTCGATTGTTAA
TAATGTTATAAAAGTTTTGTAggacaagaaaacaaagatattgGTGATAA
GTTAGGAATATTATCTTATTGCACGAATATTACTAAGCAAGTATTCAACG
GTCTTGAAATTTGCTTgatctgaaattaacacgaatgtttctgctttttc
aaggaaacagcggctggttttaattaagggggtttttatcaACACggaat
ttttcaattcgtgttaataaaatgactagtaatattcgtgtaataaggta
attcATTTGGTCCAACCTGAGACCTAGCTAGGGCTTGTATATCTTTAATA
TACTTCTTGATTCTTGCTCTAAGTTTGCTTCCTTTTTAATATCATCAATA
GACATGTTAGCGTAGTAGTATAATGTACATTGTATGGTCGTTGTCCTTTA
CTTCCCTGCTCTGTGTTTGATTCCCACTGTGATAATTGGCAAGTGAAGGC
ACCTTCGTTCGGGTCAACCCATATCATATGAGTAGGGAATagggtaccat
tactctgatatAGGAGCTAGAATGAAATATCGTGCATTGTGAGGTGTGGT
GATATTCATCTCGTTCTACTCTAGCGGCAAGCATTCTCTCCTGCGTGGTT
AGAGTGTCATCACTGGCAAGCGACAGCGCTTAGTTGAAACAAGAACCAAT
TGGTTGAAAAGGAGGGATTCCTATTTCTTGAAGAGTAGAACATGATCCCC
AAAATGCGGAATAGAGGGCTGATATCAGCTGGTGGTACTCCCATTGTTCC
CTGTGTATTATCAACTTTTCGATATTTATACTGATAACGTTATATAAAAC
GAGCATTGTCTGATTTATTTTCGAATGCTATTATTTAAGATTACGGGTTT
CCAATAATAATACACGCCTGGTTTTATTTGTTCCTGGATCGGAAACTGCT
GTACTCCACTGTAgtatcaaaatttcttttatgGCATAGAAAAGATCCTC
TTCCCAGAGGGGGACCTCAAATCAACAATCTAAAGCAAAAGGAATACCCT
CTTGCATCtttcagtaaaaaataaaatatgggATACATGGggatatatta
tatatataaaatttactGTATCCCTATTCCTAGGTTGAACAGAGATGGAG
AGATGTGCAAGGAGAGGAAACCTGGgatgaaatattcaaatttgtgtTCT
TAAATTGCGAGCCTGTTAGTTGTAAAAACGCCaaccaaaaatttcatctc
tgtATAATTGATCTCTTAAACCTCGTTTATTTCTAGATTGCGAGGTCATA
AAACATGACTTCTAGCCGATCAAATCTTGATGCTGATTCATTAAGATCCA
TCAATTCCCAAACACCATTAATGAGAGGTGGAATACACATCCCTTTGATG
AACAACAGTCTGGAGTTTCCCGAATATGATTTCCTGTTCAAAATACTCAT
CATTGGAGATTCAGGAACAGGGAAAAGTTCATTGTTAATCAGATTCTGTG
ATGACTTTTTCTCGGACAAGTTCATCAGTACTATTGGTGTAGACTTTAAA
ATCAAGACGATAGCTCTCGATGAAAAACTGGTTAAATTACAGGTATATAG
TACATAGAACACAAGATCTTTCGAACTTTTTgtcttaatattttgaaata
ccACGGAATTGCTTTTGAAAGGACAATATACGGCTTTCGAATTAACTCGC
TCTTTTGATATTTCGTGCAAACAGTACGAAAAACCAAGTATAAACAAACC
CTCTGTTTAACgttcgtttttgtttttgatgctATTTTTGCTATTGTTTC
TTGTTGCCTTTTTAGATTTGGGATTCTGCCGGACAGGAGCGTTTCCGCAC
ATTAACCACTACATATTACCGCGGTGCACACGCCATTATTATTGTTTATG
ACGTCACAGATCGAAGTACTTTTGTTAATATCGGCACGTGGTTAGCGGAG
ATTAATAAAAACGCGACAGAAAACGTTATAATAGCCCTTGTTGGAAATAA
ATGCGATATTCAAGAACGACAAGTTGAATACGAGGCCGCCCGGGCGTTTG
CGGACCGCCTCGGGGtgttatttttagaaaccaGCGCCAAAAAAGATATA
AATATACAACGACTTTTTAACGAATTGGCGCACGAATTAAAGAAGAGACT
TGGTGATCCTTTAGAGAGTAAACATAACAGTAGTGATTTTTCGCGGACAG
TAAATTTTACGGGATCGGAATGTGGCGAAAAAGACGGATATTTTGCGCAA
TGTTGTCGCATTAGGTA

Coding sequence (CDS) from alignment at sc0000090:657668..660984+

>TCONS_00009122 ID=TCONS_00009122|Name=TCONS_00009122|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0000090:657668..660984+ (Clytia hemisphaerica)
ATGACTTCTAGCCGATCAAATCTTGATGCTGATTCATTAAGATCCATCAA
TTCCCAAACACCATTAATGAGAGGTGGAATACACATCCCTTTGATGAACA
ACAGTCTGGAGTTTCCCGAATATGATTTCCTGTTCAAAATACTCATCATT
GGAGATTCAGGAACAGGGAAAAGTTCATTGTTAATCAGATTCTGTGATGA
CTTTTTCTCGGACAAGTTCATCAGTACTATTGGTGTAGACTTTAAAATCA
AGACGATAGCTCTCGATGAAAAACTGGTTAAATTACAGATTTGGGATTCT
GCCGGACAGGAGCGTTTCCGCACATTAACCACTACATATTACCGCGGTGC
ACACGCCATTATTATTGTTTATGACGTCACAGATCGAAGTACTTTTGTTA
ATATCGGCACGTGGTTAGCGGAGATTAATAAAAACGCGACAGAAAACGTT
ATAATAGCCCTTGTTGGAAATAAATGCGATATTCAAGAACGACAAGTTGA
ATACGAGGCCGCCCGGGCGTTTGCGGACCGCCTCGGGGtgttatttttag
aaaccaGCGCCAAAAAAGATATAAATATACAACGACTTTTTAACGAATTG
GCGCACGAATTAAAGAAGAGACTTGGTGATCCTTTAGAGAGTAAACATAA
CAGTAGTGATTTTTCGCGGACAGTAAATTTTACGGGATCGGAATGTGGCG
AAAAAGACGGATATTTTGCGCAATGTTGTCGCATTAGGATGACTTCTAGC
CGATCAAATCTTGATGCTGATTCATTAAGATCCATCAATTCCCAAACACC
ATTAATGAGAGGTGGAATACACATCCCTTTGATGAACAACAGTCTGGAGT
TTCCCGAATATGATTTCCTGTTCAAAATACTCATCATTGGAGATTCAGGA
ACAGGGAAAAGTTCATTGTTAATCAGATTCTGTGATGACTTTTTCTCGGA
CAAGTTCATCAGTACTATTGGTGTAGACTTTAAAATCAAGACGATAGCTC
TCGATGAAAAACTGGTTAAATTACAGATTTGGGATTCTGCCGGACAGGAG
CGTTTCCGCACATTAACCACTACATATTACCGCGGTGCACACGCCATTAT
TATTGTTTATGACGTCACAGATCGAAGTACTTTTGTTAATATCGGCACGT
GGTTAGCGGAGATTAATAAAAACGCGACAGAAAACGTTATAATAGCCCTT
GTTGGAAATAAATGCGATATTCAAGAACGACAAGTTGAATACGAGGCCGC
CCGGGCGTTTGCGGACCGCCTCGGGGtgttatttttagaaaccaGCGCCA
AAAAAGATATAAATATACAACGACTTTTTAACGAATTGGCGCACGAATTA
AAGAAGAGACTTGGTGATCCTTTAGAGAGTAAACATAACAGTAGTGATTT
TTCGCGGACAGTAAATTTTACGGGATCGGAATGTGGCGAAAAAGACGGAT
ATTTTGCGCAATGTTGTCGCATTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005108XLOC_005108Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009122-proteinTCONS_00009122-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009122-exon-sc0000090-1491911889:657668..657789TCONS_00009122-exon-sc0000090-1491911889:657668..657789Clytia hemisphaericaexon
TCONS_00009122-exon-sc0000090-1510915933:657668..657789TCONS_00009122-exon-sc0000090-1510915933:657668..657789Clytia hemisphaericaexon
TCONS_00009122-exon-sc0000090-1575043694:657668..657789TCONS_00009122-exon-sc0000090-1575043694:657668..657789Clytia hemisphaericaexon
TCONS_00009122-exon-sc0000090-1491911889:660004..660309TCONS_00009122-exon-sc0000090-1491911889:660004..660309Clytia hemisphaericaexon
TCONS_00009122-exon-sc0000090-1510915933:660004..660309TCONS_00009122-exon-sc0000090-1510915933:660004..660309Clytia hemisphaericaexon
TCONS_00009122-exon-sc0000090-1575043694:660004..660309TCONS_00009122-exon-sc0000090-1575043694:660004..660309Clytia hemisphaericaexon
TCONS_00009122-exon-sc0000090-1491911889:660533..660984TCONS_00009122-exon-sc0000090-1491911889:660533..660984Clytia hemisphaericaexon
TCONS_00009122-exon-sc0000090-1510915933:660533..660984TCONS_00009122-exon-sc0000090-1510915933:660533..660984Clytia hemisphaericaexon
TCONS_00009122-exon-sc0000090-1575043694:660533..660984TCONS_00009122-exon-sc0000090-1575043694:660533..660984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:657668..660984 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.112688	8.0892	8.97307	4.32184	2.59386	2.6248	2.57056	4.92298	2.95798	4.05311	10.5679	5.51712	5.65487	0.168615	0.294073	3.88516	3.88983	2.48555	2.9211	3.97371	3.85043	0.507495	0.154746	0.234739	0.0597906
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR025662Sigma_54_int_dom_ATP-bd_1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00009122 vs. Swiss-Prot (Human)
Match: RAB1A (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 2.256e-74
Identity = 112/199 (56.28%), Postives = 147/199 (73.87%), Query Frame = 3 
Query:  255 PEYDFLFKILIIGDSGTGKSSLLIRFCDDFFSDKFISTIGVDFKIKTIALDEKLVKLQIWDSAGQERFRTLTTTYYRGAHAIIIVYDVTDRSTFVNIGTWLAEINKNATENVIIALVGNKCDIQERQ-VEYEAARAFADRLGVLFLETSAKKDINIQRLFNELAHELKKRLGDPLES----KHNSSDFSRTVNFTGSEC 836
            PEYD+LFK+L+IGDSG GKS LL+RF DD +++ +ISTIGVDFKI+TI LD K +KLQIWD+AGQERFRT+T++YYRGAH II+VYDVTD+ +F N+  WL EI++ A+ENV   LVGNKCD+  ++ V+Y  A+ FAD LG+ FLETSAK   N+++ F  +A E+KKR+G    +    K N    S  V  +G  C
Sbjct:    6 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204
The following BLAST results are available for this feature:
BLAST of TCONS_00009122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB1A2.256e-7456.28Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
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