TCONS_00009114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009114
Unique NameTCONS_00009114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009114 ID=TCONS_00009114|Name=TCONS_00009114|organism=Clytia hemisphaerica|type=transcript|length=543bp
CTTGTGTGCTCTGGAAGGGAAAGCGTAATAGACAAACCTCCAGATTTTCA
AGCAAAATGTCTGGTGGCTATAATTTTGAAGCATTAAATGAAACACCCAA
AGAATATGAATGCGGAATTTGCAGCCAATTTCTCAAAGAAGCAGTGGAGC
TGGCATGCACTCATGCGTTTTGTGGAGATTGCTTGACTAGATGTGAAAAA
GACAAaccAAAACCAAGCTGTCCAATATGTAGACGAACGTATAACAATAC
TGAAAAACATCCAAATCATACATTAAACAGAATTATAACGACCTCAATGG
ATGTTAAATGTCCACTGAAAGATGATGGATGTGAGTGGACTGGAAAAATA
AGTGACTTTAAGcaTCATTTATGCCAATACAAGTTTATTAAATGTTCCCT
AGAAGGATGTACCGAAATCATACAGAGGAGGCTAGAGGGAAGGCATCAAA
AATCGTGCAAGCATCGAATTATTGTTTGTCTCCAttgtaaagtaaaaata
aagtaTAACGAATACAGCGCCCATCTATTAGTTTGCGACGAAG
Run BLAST on NCBI

transcript from alignment at sc0000090:610413..614994+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009114 ID=TCONS_00009114|Name=TCONS_00009114|organism=Clytia hemisphaerica|type=transcript|length=4582bp|location=Sequence derived from alignment at sc0000090:610413..614994+ (Clytia hemisphaerica)
CTTGTGTGCTCTGGAAGGGAAAGCGTAATAGACAAACCTCCAGGTTGTTG
TCAaacttattttctattttttcctaTCTACACTTCGCTTTCCTTGTTTC
TTTAGATTGATTGAGATATATCTTTTGAGTTTGACAGAGTGTATGTATGA
GTATTGTCAGACAATCTCAAGAACAGAGTCAgagaatacacctttcccgt
aaggcggcaatcacaaatatattcgtttcgcgtcgcccgaccgactctcg
aaaattgagtagagtTGAGTCGGTGAGttggtaaatttgtcggacttttt
ctgtcgatgacttttctttgttcaaaaattttattaatgctgattttttg
cgagcgatttctagcgcattcgcggcattttgactttgtctATCATTACA
TGTGCCATTTTGGGTCGTTATgtaaacccgaaaatttttacgaccgacca
accgaccgactcacttttaagacccaacgaggacgcgaaatgaagatatt
tgtgattgccgcctaattCAAACTTCTTAGAAATGGCCCGGAAAAATGTG
TCCTCCACTGTTGTGTAtgaaattgtttgggaggtaaacaaacacgtttt
tgcctgcgaggggttagggaaagtgggttttcagcttctaacttttgata
gcgatcttcttttggcaaaagattttcagggtggtataataccATGAATA
Gactgaacatactaaaatttgaggggattttgtttgacagaacttaagaa
aagctcaaagtCAAAAAACCAACTTNCCATAAATAGATTgaacatgtact
aaaatttaaGGGGATTTTGtccgacagaacttaagaaaagctcaaaaaac
caactttccctaaggaaacgcaggcaaaaacgggtttgtttacctcccca
GAGCAGAGCCCAAACGGTGATGGAGAACACCAAAatataatgcgcgcgca
ttagttttacgaattacgggaaaggtgtattcttgATTTCCATGATATGA
TATGCGTAATTCATTTTTCTAgtggaaacacccgaaaaaatctGGGATTT
GACCCCTATCTTTtactaaaaaaatagaaacacaatGGTCAAAATTCGGC
TTTTTTCGGGTGCATACGttgaaaatatgacgtcatcttgattTACGCAT
ATCATATGAAGAATATGAATCAACAATAGAACCAAATCGAGCCAAATCCA
GTCATTTTAAAAATTACTCCAGCATACATTGAATTCACTCAGCCAGTACA
AAACctttgtgtataaaattgtttgggaggtaaacaagcACGTTTTCGCC
TGTGCCCAGCTGCGTCAGGGGCAAGGGGGGGTGGTTAGGGAAAGTGAGTA
GTTTTCGACGTATCTTTTCTTTTAATAGCGAtcttttttttggcaaaaca
gtttcagggtggtataatatcatgaatagaaagaACATACTAAGATTTGA
GGGGATTTTAATCGACAGAAGctaagaaaaactaaaaaaaaaacatttcc
taAAAGGAAACGCAGACAAAAACTACCTctagagaccaaacggtggagag
catcaaaataatgcgtgTGCATCTGTTTTGCGAATTCTGGGAAAGGAATA
TTTAAAAagtctcaaaataattctgtaatgaacaaattaaaagtCATGCG
CTCCATCATGATTTACTCCTAAAAAGAGAACCTCTTGGAGTTAGACAGTG
AAAATTTAAACTCAACAGTTgatacaaacaaaaaatctaGAAATCGGCCA
ATTAatttagataaactcacttCCTGACCTTGTTGGACTTATTAACATAT
TTAGTGGCTCTCATCATAAACAAACATAAGCCTTAAATGACTTGATTTCG
GGATAACAACAATTTAAGGCTCAAAGTGACCAAAAATAATGTCATAAAAA
AAGATTGCTGGTGGCTCTATCTTACAAAAATTGTGTTTTCCCAtgtgtgt
ttaaaatttcattcgACTGTGTGTCACAGGCTCTATCAATAATGTGTAAG
CTCATAAAGATTACCATTAATGAAGTCTCTGTGAGGGTtttcaagaaatg
aaaataaatgataaaaaataaaacttaatatAATACTCTAGATTTTCAAG
CAAAATGTCTGGTGGCTATAATTTTGAAGCATTAAATGAAACACCCAAAG
AATATGAATGCGGAATTTGCAGCCAATTTCTCAAAGAAGCAGTGGAGCTG
GCATGCACTCATGCGTTTTGTGGAGATTGCTTGACTAGATGTGAAAAAGA
CAAGTATGCTTGTTTTAGCTGTCCCAATATTTTGAAGGGTCTGCACATAG
GCAAATGAAGATGGGGtattcctttttatttttagcaaCGTTTACCCTTA
AAGAAACATAAGAAAGATATTTGATCCCTATTTGAAAGCTATAATTATGT
TTTACACGCAGTAGCCTGTACTGTGCCACCCTGATCGCCCACAGGCGGTT
ATTGCTTCCAAAAAGATGTGTCTGGCTAGTACCAACTtttaaaatcatcg
aaaaaatgtgCATAGGGCGATCAAAGAAATGTGCATAGacggtttttttc
aaaaacaaaagatacAGACAGTACATTAGACCATTGGCAATACTTTCTCA
ATATTGGCAAGCCTTTCCTACCAGTGCTTATGttgtgttatttttatttt
agaccAAAACCAAGCTGTCCAATATGTAGACGAACGTATAACAATACTGA
AGTAAGTTTGTTATAATAATATGGGTATCTTAGCTATAGTTTGCCCTGGG
TAGAGCAGTGTAGAATAATTTTAATAACTGTCTCTTTTATATTTTAACTA
TGACGAAATGTTTTGCAAACTTTATTTGATATGatatgtttttattcttt
atgagtAACAgccaaaagattttattattcTATTTACAGATTTTATTATT
ATTCTATTTAGAAACATCCAAATCATACATTAAACAGAATTATAACGACC
TCAATGGATGTTAAATGTCCACTGAAAGATGATGGATGTGAGTGGACTGG
AAAAATAAGTGACTTTAAGGTATATATCATTAAAATTGATCAAAGTTTGG
AGCGGGAATGCTTTTCAAATCTATTCTTACTCGCGTGAAGTTCAAggtta
tataaaaaaacaagaaagataAAGGAGGTCCCGGGGAGGGGCCCTCAAGG
TAAATGGCGGCCCTTATTAATTAATGGTCTCTTTTCCAAGCTTTCCGAAG
TGCActcactgtaagggtcgaaatgagaaaatgtgcactctaagggttta
aaatttggaaaatctgaccattttgcctttttttaaatggtcgaaaattt
tcaagaaaatgcttCGCTAGGGTTGAATTTTCAcccaaatttattcaaat
ttactcaaattttgctcaattttatTTGGAGTGTAAAACCAGATTTCAat
ggcctaattttgggctgcACGTATGATCGTTTTTGAATcgatcccccccc
cccggaagaaatcattttttgaaatttcatattacaaatattatttattt
tttaggttGATTCTTATAAACATGGTACTGTAGATCAAAGAGCAAACTGA
ACTAATACcaaataatatttcatttttagcaTCATTTATGCCAATACAAG
TTTATTAAATGTTCCCTAGAAGGATGTACCGAAATCATACAGAGGAGGCT
AGAGGGAAGGCATCAAAAATCGTGCAAGCATCGAATTATTGTTTGTCTCC
AttgtaaagtaaaaataaagtaTAACGAATACAGCGTAAGTGATATCACA
ttctttaaaaatgtcaaaacatcAAGTACAGGGTGACCCATGAAAAGCTT
CGGACAGTCTCAAGGTCGAACAAATACACCCAAATGTTagctcaaaagtc
caaaactctcaaatttatcatttttcatgtttgtaaaaaagtcaagtcta
aaaaagNaattctttaaaaatatcaaaacatcaAGTACAGGGTGACCCAT
GAAAAGCTTCGGACAGTCTTGTGGTCgaaaaaatacacgctttttaaaaa
taagaatatcttctataagaatatcagggtgaaaattggccaaatcgtaa
gaataccctgaGAATACCatctagggtgaatttcacagaatttgataaaa
atacagtcattttgtatttggttaacagaaaaaactgcttcctttgttag
agataaaattgaatttttgaggaagaaatgtaaaTTTAACacaaatgttc
actcaaaagtccaaaactctcaattttatcatttatcaagtctaaaaaag
taagaatacgctaagaatatttcaccctcaattttggcactttcttaaga
atacttgaccctcatccaaagtacactattcttataaaaaaaaagcgtgt
atctacTTGGCTAAAGTTGCCCCAAACTTTCCTTTAACTTTCGTTCAGGA
GGATTGGGGCTCAGTGTATTCCGATGGGATCTATCTCGGGTATGTTTCTC
CCAACGGACGAATTTTCGACTAATTTTCCAATGGGTAGGTAATCCTAACG
TGTTTGATACTGAGATGTCTGAAGAAAAATATAatctgtgttttttttca
ttcatagGCCCATCTATTAGTTTGCGACGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005107XLOC_005107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009114-exon-sc0000090-1491911889:610413..610455TCONS_00009114-exon-sc0000090-1491911889:610413..610455Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1510915933:610413..610455TCONS_00009114-exon-sc0000090-1510915933:610413..610455Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1575043694:610413..610455TCONS_00009114-exon-sc0000090-1575043694:610413..610455Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1491911889:612504..612665TCONS_00009114-exon-sc0000090-1491911889:612504..612665Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1510915933:612504..612665TCONS_00009114-exon-sc0000090-1510915933:612504..612665Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1575043694:612504..612665TCONS_00009114-exon-sc0000090-1575043694:612504..612665Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1491911889:613065..613113TCONS_00009114-exon-sc0000090-1491911889:613065..613113Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1510915933:613065..613113TCONS_00009114-exon-sc0000090-1510915933:613065..613113Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1575043694:613065..613113TCONS_00009114-exon-sc0000090-1575043694:613065..613113Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1491911889:613324..613431TCONS_00009114-exon-sc0000090-1491911889:613324..613431Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1510915933:613324..613431TCONS_00009114-exon-sc0000090-1510915933:613324..613431Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1575043694:613324..613431TCONS_00009114-exon-sc0000090-1575043694:613324..613431Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1491911889:613992..614147TCONS_00009114-exon-sc0000090-1491911889:613992..614147Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1510915933:613992..614147TCONS_00009114-exon-sc0000090-1510915933:613992..614147Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1575043694:613992..614147TCONS_00009114-exon-sc0000090-1575043694:613992..614147Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1491911889:614970..614994TCONS_00009114-exon-sc0000090-1491911889:614970..614994Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1510915933:614970..614994TCONS_00009114-exon-sc0000090-1510915933:614970..614994Clytia hemisphaericaexon
TCONS_00009114-exon-sc0000090-1575043694:614970..614994TCONS_00009114-exon-sc0000090-1575043694:614970..614994Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:610413..614994 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.99011	6.70771	4.75456	3.24671	5.31323	2.85741	0.318313	2.43981	2.12553	4.19738	7.22672	4.36138	5.67752	8.63198	10.7798	7.57486	6.36243	10.0476	3.68895	3.95953	7.97146	7.93818	8.02693	8.38903	6.21172	8.20076	2.72428	2.47946	6.97026	6.90332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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