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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009113 ID=TCONS_00009113|Name=TCONS_00009113|organism=Clytia hemisphaerica|type=transcript|length=221bp
TTTGAGGACCATCAGTCACATTTTGAGATTTAGTTTTGACAGTAATACTG
GGAATATCATCTCGTACTGCAACCCAGTCGTCATCTAGTAACTCCATCTT
GTGCTCATCACAAATAAACCTTTcatcaaaatatctaaaCTTGAATTAAT
TTCCAAACCAAAACTGATTAACTCTCATCTCTAAGTTTTCTCTCAAGAAG
TGCAAAATTTGTAAGTAAAAG Run BLAST on NCBI transcript from alignment at sc0000090:593407..598273+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009113 ID=TCONS_00009113|Name=TCONS_00009113|organism=Clytia hemisphaerica|type=transcript|length=4867bp|location=Sequence derived from alignment at sc0000090:593407..598273+ (Clytia hemisphaerica)
TTTGAGGACCATCAGTCACATTTTGAGATTTAGTTTTGACAGTAATACTG
GGAATATCATCTCGTACTGCAACCCAGTCGTCATCTAGTAACTCCATCTT
GTGCTCATCACAAATAAACCTTTcatcaaaatatctaaaatgaaaaaagg
aatttgtttaaaaatcaaGGGATTTGAGCTCTCTTATAAGATGATtctgt
taaaaaaatatcacatgttgaaatgtttcaattttacaaACTAGAATCTT
AAATGTATCTATTAACCACTCCTTATTCGATGATGACTATGATGATAGCA
ACATAAAATTTGCAGTGTTGTCATAGTTCGCAACCCTTtcttaaaaattg
ttcttaaaaaattgcagaaaggggggggggtaatagAATTTCTTGAAGAA
AGGGGGAACTTTTCAAAAAGGGGGAGGTTCATCTAGAAAGGGGAGGTTAA
ACGCGTTAGCAAAGGTCTTAGAGCACATCTTTCTAAATTTCTAGTTTTGC
AGTCTTGGACTGGGTTAAAATcctaaaatttttcttgctcgctttgCTCA
CTATcttttttcaccaattttcagaAGGGATATATACTACAAAATAAACT
CAAAAGCACCTCTTTCTAGCGAGAATATGCTAACATTTTAGTTAATGGTG
CATGATGTCTTGTGAAAGTGGGAAAAAAATCTTGACGTCACCAGGAATTT
GAGGAGGATTCCATCAAACTTTTGGAAAGGAGTAGAACCTAGAGTAGGGG
GGTTGTTCTAGACTAAAGGGTAGTGATCTCCTTCAGAACTATGATTGTAt
tgtttaaaattaaaaaatgccaACATGGACAATTAATTTTCTAATAATGA
CCAACCTTGataataagaactttttgaagtctaaaaataaagtctctaga
gaagaatttccagaaaaaagtcatattacataaataaaatcaaattccAG
CTTGTATTTTGGTGCATCTTACAGTCTTATTTTGACGAGACTGACTCGAA
ctctaaaaaaaattgatctGTTGATTCTACAGTCAGACAGTTGAATTGAA
GGTTCAAGTTcaacagaaaataaaataaaattctcagATAGCTATGTAAA
AAAAGGTACCAGTGTTTTCTGGTGTTTGCAGCCTAAGTTTGATCACTTAT
ACATACTGAGAGAGCTCCCAAATCTTGGAAATCTGACAAGTTCTTTAATC
TGGGGTCTACTGGTCTACtgtaattctgacacccttcttttaGAGTTGGG
ATAATTAAAAAGGTAAGATCAGTCAGGGCTTCCTTGGTCTTTTTNAGAGT
TGGGATAATTAGAAAGGTAAGATCAGTCAGGGCTtccttggtctttttta
acattagctcggatagaataaaaacgtGAATCAAAACATACCTTATCAAC
aaaaccaaaccttctgtcttgcgtttactctttccttcccaacaactttc
acttttggttatgtaggttttaaaatccacaagtaatgaaccttttatag
ctttatctgaataaatcttgttgaaaaccttctgtcaggtttcattccac
ttacgttttttatccacatgGTGCACCAGTTTCCCTGATTTTCCAATACA
GtgattaaaaattggaactttcccatGGGCGCGATTGGGTGTACCACCat
cacaaaatatttttcatgaaaatttactGTATACTGCCATGCATACCGTC
AACTGATGCTAGgaacgattggttgaaacatgggactattgatatctggc
ctgtattttcacttactgttaaattttttttgataatatacatcaatcat
actttctgtcataacatgtcacaataactttcactgatagcgcacctttt
aacttttttgttttcatttaaaatgactgGACGCTGATTgtagaattaga
gaacgcccccACCTAatcgcctatcgcccgatgggattaacaaataacga
gtgcgtaactttctctagtccaataaggctgcaggatttgagtcatgtga
catctctattgaaaaacctgCGCAGAAttaaatagaaatacagggggtca
cactactggctacaggaactgaaaacaaacaattaaggcaatattttttg
ttttttgaaggacaaaaggtaaaggaagctttactgaaggagggataagg
ctgggactatctatttaaaagaaatgaacaaaaaaaggcacttttttggg
tgataaataagattttacttagaaactttaattctcttacccccgtcttg
gGCTCCCCttatatgagcaagggaaccatgttggccgtacccctactgaa
aatttcagatcaaaacaaacttgatgaaaattggaaaagctggtttttga
ctgtttctgatcctaaagtgctttttttttggtaaaagctatgcaatata
tgtttggatttctagaaagcttacccattcattgtcaatatattttttat
ttgaaagtaatctctttatggaataaaaagatatagtcaaatcttgtagg
gtcatttttcaaaaattttttgccaaaatcaattttcacatttcgccatt
ttaccctacgcaaacacACGTGAGTCCcatagagcagttgacggtacaaa
aGAGAAATCCTGTATTTTCTAATACGccattcattaactcaaatcaaatg
gcttcagacagtgtagctggaacctcgatattccaggattagaaaaagct
atacctgttatcttttttctttaaagaatcaacaagccatcaacattgat
aaatTACACACATTTCCTCAGGAacatttaaaattatctgccattatgac
tttcttgaagccgttccgaaattaaccaatcgggttaggtattggaattc
ctatgggagttcttttccaagatttgtaaattagctaagtcagcaaaaaa
acttttcctgggggtttgaggaataaacagaactgttatcatttgttttt
tattcaaccatatattcaaatttgtgctcaaaaatacttaaataaataag
ttgataatattcaatatactatttgcatctctcagaaaataaacacttac
agaacgacatagtttctcatttggaatacccccgtgtttggaccattcta
ttgtgggcgaaaaatagggcggaaactaagtagcaccctcaatgcaagat
tgccgcctcatctttattcacCTGCGTGAAaacgcgagctaatcattttt
ttctcgcaagCTCAatgggaaaaggaaagtgatcgatattctttgaagga
aaaacgtcccaaagaccaaaagatgtattttgttgttgagaatcgatcat
gtgaagatgaaaaaatttctgctatgcgtttttttcggaacgctgaaaaa
ctctaatttcgatcttccttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNtcttccttaaggtaaagaggttgcgagat
ttgggttagcgaggcaaaaattgctaaaaaactggtaaaatcgtaatcct
caaaaatcgaaggtCCAGCCTCACTGTcagaggtttggtgaaatggtggt
gccGCCATggctgaattgccgtcccatgttttgtcagatagtcccaagtt
agagcagttgacggtattttgtcaacatccttttcattggatggATTGAA
CTACCACAAATTCAACATTCTTTCTATGAATTATTCCTCGAAGATATTTA
AATTAGTTAGtataaatacaaaaacatgCAAATTCTAGATAGAAAATGAC
TGATCGCTGCTGAAAGTTGAAACACCCCAGATTAAAGAACTCGTTGTCAG
ATTTCCAACATTTGGGAGCTCTCTCTGTATGTATAAGTTGTAAAGTAATC
AAACATACACCGTGAGATtggttgggtaacttgcatcagtggaggctaac
atgcatagccctcaaatgaaagacctggctggtcattaaagtACAAaggt
aaatcaaaacaaaaatggtagagtagagctgcgagcgaagctgcgtagtt
ggattttaatgaccagacaggtcattcatttgagggctatgcatgttata
ATAGCCTCCACTGACagactgatgcaagttacccaaccaATCTCACGGTA
GGCTGCAAACACCAGAAAACACTGGTACCTTTTTTTTACATAGCTATctg
agaattttattttattttctgattgAACTTTAACCTTCAATTCAACTGTC
tgaaggaccctgccgacgcaccagacttaacgaacaccggacacgcgaaa
gtccggtgtaaaatgagaatttttttaccaccagaccatctctacaccgg
actaaAGGAAGTCGGTTGTCCGGTGTCGAAGAAGGAtacttttttccacc
ggacaatcaaaacataaatgTCCGGCGGCCAGAATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCGGACTGAcgccggacttattgcgtcc
ggtgtagcgaaaggatactttctgccaccggacaaatacaccggacagtc
cggtgcgtcggcagggtcctctgtCTGACTGTAGTAGTGTAGAATCAAAC
ACAAcagatcaattttttttattagagtTTGAGTCAgttttgtaaaaata
tataatctCAGTAAGAAAGTAAAGAATCAACTTACCTTGAATTAATTTCC
AAACCAAAACTGATTAACTCTCATCTCTAAGTTTTCTCTCAAGAAGTGCA
AAATTTGTAAGTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009113-exon-sc0000090-1491911889:593407..593545 | TCONS_00009113-exon-sc0000090-1491911889:593407..593545 | Clytia hemisphaerica | exon |
| TCONS_00009113-exon-sc0000090-1510915933:593407..593545 | TCONS_00009113-exon-sc0000090-1510915933:593407..593545 | Clytia hemisphaerica | exon |
| TCONS_00009113-exon-sc0000090-1575043694:593407..593545 | TCONS_00009113-exon-sc0000090-1575043694:593407..593545 | Clytia hemisphaerica | exon |
| TCONS_00009113-exon-sc0000090-1491911889:598192..598273 | TCONS_00009113-exon-sc0000090-1491911889:598192..598273 | Clytia hemisphaerica | exon |
| TCONS_00009113-exon-sc0000090-1510915933:598192..598273 | TCONS_00009113-exon-sc0000090-1510915933:598192..598273 | Clytia hemisphaerica | exon |
| TCONS_00009113-exon-sc0000090-1575043694:598192..598273 | TCONS_00009113-exon-sc0000090-1575043694:598192..598273 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:593407..598273 + |
Blast
The following BLAST results are available for this feature:
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