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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009111 ID=TCONS_00009111|Name=TCONS_00009111|organism=Clytia hemisphaerica|type=transcript|length=1162bp
CACAAAACAAACATTGGAGTTAAGCTATTCATTGAGAAGTGGCTTATAAG
AGATGTTGGAGCAACTTTTTTCTGGCAATTGATCAAACAGTTTCAGCAAG
ACACTTGGAACAAGACCAATCAAGAAACGTAGCTGAGAGGAGGGAACAAA
TTTGAACGAATTTTAAAAGCAATACAAGAGAAGATACAGATATAGTTAAT
ATACTGaCAGTTACAGAAGCAAGTGCAACATCAAAACACGAGGAaaggaa
gaaaagaagaaacgcAACGATGGTGAACAAACTCCGTAAAACACTCTCCG
ATCACGTCGTCAAACGTCTTTCACAAATCATAGATCGCAGTCGACCGTCG
TCTGACGAATTCTCCGACAACGACGAAGATGACGTAATTAACGCAAACGA
ACCATGTAAATTACGTTCGAAGACGCCGTCATTTATTAAACGGCAAATGA
AATTCGCGCGTCGGATGACGGTGACGGGATGTGACGGGCATCAGATCGTG
GACAACGGGATTCCGTGGTATTACAACGACCATACGGAAACGACGGTGGA
TAGATTCGGCGTGAAAACCACTTCGTTTTGCGCATCAGAGTTATGAAGGA
AAGGTGAAGATTTAAGATCCAATTCTAGTGAGAGTTAATGTTCCTATAGT
CCTCTATCAAAGAACTCGCCAATAGCTTAATATACTTGAAACGTGCGTCG
AACTCATGCAACCGTACTCTTTATGCATTGCAGGATAAACGGTTGACATA
TGTCATAAGGAAAAGTGTCTTGTGGGTAAAATTGAAAGTCTATCTATTCA
CTGCATTGAAACTTCCTCTGCTTTTGATTGGTCCTCTACCAAAGAAAGTA
GAAAAACCTTTGTCCAGAAAAACTGTTGGCAACAACTTATCTACATTGAA
AAGACAGTAACTTTACCATCGGTGTTATTTTTCAAACCAACATCCAGATT
TTATGTTGATAATAGAGCTGGTCTCTCAATACTTTAACTTTTCACTATAA
TAGGTGcgttaccttatcggccaaaacttagtcggccttaactTTAGTcg
acctcgtcaaaatttagtcactaagggccgactaataactaagttttggc
catttctaaatttttagtcggcgcaaattttagtcggcccaaatttttag
tcggccctaatt Run BLAST on NCBI protein sequence of TCONS_00009111-protein >TCONS_00009111-protein ID=TCONS_00009111-protein|Name=TCONS_00009111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MVNKLRKTLSDHVVKRLSQIIDRSRPSSDEFSDNDEDDVINANEPCKLRS
KTPSFIKRQMKFARRMTVTGCDGHQIVDNGIPWYYNDHTETTVDRFGVKT
TSFCASEL Run BLAST on NCBI transcript from alignment at sc0000090:577571..579476+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009111 ID=TCONS_00009111|Name=TCONS_00009111|organism=Clytia hemisphaerica|type=transcript|length=1906bp|location=Sequence derived from alignment at sc0000090:577571..579476+ (Clytia hemisphaerica)
CACAAAACAAACATTGGAGTTAAGCTATTCATTGAGAAGTGGCTTATAAG
AGATGTTGGAGCAACTTTTTTCTGGCAATTGATCAAACAGTTTCAGCAAG
ACACTTGGAACAAGACCAATCAAGAAACGTAGCTGAGAGGAGGGAACAAA
TTTGAACGAATTTTAAAAGCAATACAAGAGAAGATACAGATATAGTTAAT
ATACTGGTAAGTAAACTATTTTACGTAGTTCCCCCCTTCTACTCCAAGGT
CCTTCTACTTGCCGAGGAAATGTCCTTTAGATTGTAGATTGTGGAATATT
TTGTATACTCTATCCAGTACTATCTAGCGACTGCTTATGTAATAAGCAGT
ATACATAAGTATACATAataagcagtcgcttcatttttctGTTCTACTAA
TTTGCTGCTTCTACATTTTCAAGTTTTCCAGTACTATCTACATTGACTTT
GTGAAAACTTACCCCtttcaggccatttttcatgcccttttagcATCCGG
tcatcggacgctgcccctcctaaaatctcctttttagcagaaaaacacaa
gaaaaagtgccctttttggccaccaacggacgctgccctgcctttctaaa
atatggcctgccttttttaaaaatgtgaGATACATCGAATATCTCTTTCT
AACCGTGAATAAGTGCTCTAAATCACTCAGTTTTCCTCTATAATTTCATG
TTAAGCCACTCTGTGACTTGCGTAGGTAGGTACTCTGAAGAGCTCCTTGA
CTTATGACTTGATTTAACTTTTCTCTTTTGTTCCTTATATAGTAGAATAT
ATCCCTCTCTGCTGATATTCTTAGACCAATTGAACATCTCAATTGTTTTT
CATATTTGGAATGTTTAAGACCATTCGAAACAAAGCTTCACTGGGTGGAG
ATTGACTTAACAaaaattgaaactaaatttctctctcatttttcttttag
aCAGTTACAGAAGCAAGTGCAACATCAAAACACGAGGAaaggaagaaaag
aagaaacgcAACGATGGTGAACAAACTCCGTAAAACACTCTCCGATCACG
TCGTCAAACGTCTTTCACAAATCATAGATCGCAGTCGACCGTCGTCTGAC
GAATTCTCCGACAACGACGAAGATGACGTAATTAACGCAAACGAACCATG
TAAATTACGTTCGAAGACGCCGTCATTTATTAAACGGCAAATGAAATTCG
CGCGTCGGATGACGGTGACGGGATGTGACGGGCATCAGATCGTGGACAAC
GGGATTCCGTGGTATTACAACGACCATACGGAAACGACGGTGGATAGATT
CGGCGTGAAAACCACTTCGTTTTGCGCATCAGAGTTATGAAGGAAAGGTG
AAGATTTAAGATCCAATTCTAGTGAGAGTTAATGTTCCTATAGTCCTCTA
TCAAAGAACTCGCCAATAGCTTAATATACTTGAAACGTGCGTCGAACTCA
TGCAACCGTACTCTTTATGCATTGCAGGATAAACGGTTGACATATGTCAT
AAGGAAAAGTGTCTTGTGGGTAAAATTGAAAGTCTATCTATTCACTGCAT
TGAAACTTCCTCTGCTTTTGATTGGTCCTCTACCAAAGAAAGTAGAAAAA
CCTTTGTCCAGAAAAACTGTTGGCAACAACTTATCTACATTGAAAAGACA
GTAACTTTACCATCGGTGTTATTTTTCAAACCAACATCCAGATTTTATGT
TGATAATAGAGCTGGTCTCTCAATACTTTAACTTTTCACTATAATAGGTG
cgttaccttatcggccaaaacttagtcggccttaactTTAGTcgacctcg
tcaaaatttagtcactaagggccgactaataactaagttttggccatttc
taaatttttagtcggcgcaaattttagtcggcccaaatttttagtcggcc
ctaatt Coding sequence (CDS) from alignment at sc0000090:577571..579476+ >TCONS_00009111 ID=TCONS_00009111|Name=TCONS_00009111|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0000090:577571..579476+ (Clytia hemisphaerica)
ATGGTGAACAAACTCCGTAAAACACTCTCCGATCACGTCGTCAAACGTCT
TTCACAAATCATAGATCGCAGTCGACCGTCGTCTGACGAATTCTCCGACA
ACGACGAAGATGACGTAATTAACGCAAACGAACCATGTAAATTACGTTCG
AAGACGCCGTCATTTATTAAACGGCAAATGAAATTCGCGCGTCGGATGAC
GGTGACGGGATGTGACGGGCATCAGATCGTGGACAACGGGATTCCGTGGT
ATTACAACGACCATACGGAAACGACGGTGGATAGATTCGGCGTGAAAACC
ACTTCGTTTTGCGCATCAGAGTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009111-exon-sc0000090-1491911889:577571..577776 | TCONS_00009111-exon-sc0000090-1491911889:577571..577776 | Clytia hemisphaerica | exon |
| TCONS_00009111-exon-sc0000090-1510915933:577571..577776 | TCONS_00009111-exon-sc0000090-1510915933:577571..577776 | Clytia hemisphaerica | exon |
| TCONS_00009111-exon-sc0000090-1575043694:577571..577776 | TCONS_00009111-exon-sc0000090-1575043694:577571..577776 | Clytia hemisphaerica | exon |
| TCONS_00009111-exon-sc0000090-1491911889:578521..579476 | TCONS_00009111-exon-sc0000090-1491911889:578521..579476 | Clytia hemisphaerica | exon |
| TCONS_00009111-exon-sc0000090-1510915933:578521..579476 | TCONS_00009111-exon-sc0000090-1510915933:578521..579476 | Clytia hemisphaerica | exon |
| TCONS_00009111-exon-sc0000090-1575043694:578521..579476 | TCONS_00009111-exon-sc0000090-1575043694:578521..579476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:577571..579476 + |
Blast
The following BLAST results are available for this feature:
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