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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009096 ID=TCONS_00009096|Name=TCONS_00009096|organism=Clytia hemisphaerica|type=transcript|length=1316bpRun BLAST on NCBI protein sequence of TCONS_00009096-protein >TCONS_00009096-protein ID=TCONS_00009096-protein|Name=TCONS_00009096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp RISPDEIQSSHDWDIEFKMSGQDINPFASPEDVNPFAGADSPNTDSKVDMRun BLAST on NCBI transcript from alignment at sc0000090:314787..323314+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009096 ID=TCONS_00009096|Name=TCONS_00009096|organism=Clytia hemisphaerica|type=transcript|length=8528bp|location=Sequence derived from alignment at sc0000090:314787..323314+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000090:314787..323314+ >TCONS_00009096 ID=TCONS_00009096|Name=TCONS_00009096|organism=Clytia hemisphaerica|type=CDS|length=12639bp|location=Sequence derived from alignment at sc0000090:314787..323314+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009096 vs. Swiss-Prot (Human)
Match: SCAM2 (Secretory carrier-associated membrane protein 2 OS=Homo sapiens GN=SCAMP2 PE=1 SV=2) HSP 1 Score: 215.312 bits (547), Expect = 3.660e-65 Identity = 137/355 (38.59%), Postives = 198/355 (55.77%), Query Frame = 3
Query: 57 MSGQDINPFASPEDVNPFAGADSPN-TDSKVDMTNEFNPFAVQNEPPPQATPTSPANK-PKSPTFSDSPAPVYQAQSTPKPVSSPATIEPAWMNXXXXXXXXXXXXXXXXFRGYGSTTDDMQQKQEELDRKAEELDRKEAELRKRQADGDGR-NNFPPLPKCCCVGPCFYHDINMDIPVEYQRTCRMLFISWQLYVLALFMNVLSALAGVIEGYDDTPMLFGIALLYFVLFPIMSFVCWYRPVYKALRXXXXXXXXXXXXXXXCQTVLMFVYALGINSMGTCGWINASKIASGGNHGVSIMFFITAALFTLLVFVYAYLLRRVHQIFRSSGATMQKAQKEFAEGMASNKTVQKAA 1112
MS D NPFA P DVNPF T++ EFNPF+ N A T P + P S + V Q TP+ V S A + ++QEELDRKA EL+RKE EL+ A+ R NN+PPLP C V PCFY D + +IP +YQR C+ML+ W L+ + LF+N+L+ LA G + FG+++L+F++F +F+CWYRP+YKA RS++SF+FF+FFFVFFCQ + + +GI +G GWI A + +S++ + A FTL + +LL+RVH ++R +GA+ Q+AQ+EF++G+ S++T +AA
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETN-----AATTVPVTQLPGSSQPAVLQPSVEPTQPTPQAVVSAAQA-------------------------------GLLRQQEELDRKAAELERKERELQNTVANLHVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW-FSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASFQQAQEEFSQGIFSSRTFHRAA 318 The following BLAST results are available for this feature:
BLAST of TCONS_00009096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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