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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009095 ID=TCONS_00009095|Name=TCONS_00009095|organism=Clytia hemisphaerica|type=transcript|length=462bp
CACAAATTAGTTTCGCTCGAGATAGAGAGGAAGTTAGACCTCCGAAGAAT
CACAGGTCAGGCTAGTTATAAagcgaaaattttggaaataatagAGAACC
TCTCCTCAACAATAAGCAGTCGGTGGCTGACTCGTACAATTGGTTATCAG
GGAACGTCATGTTAACAACGCCAAAGCAAAATGACTAAACGCATCAAAAC
GAAAATACATCACCAAAACTAGACAGATTGCAGGAGAATCAAACATCACG
TATTATATGAACAATGTTTTACTGGATTCATGAACAAAGACAATCAGTTA
TAAAAAGAACTTTGTGTTAATGACACGACGAAAAAAGTCCAAGATGTTTT
TTTGGACTGAATTTTGTGTTCTGTTATAATCAGAGCTGACAAGAGACATC
TATTCGAAAATCCATTGGcaaataaataaagaataatCAGATGACAAACA
GTTTAATTAAAC Run BLAST on NCBI transcript from alignment at sc0000090:304587..309608+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009095 ID=TCONS_00009095|Name=TCONS_00009095|organism=Clytia hemisphaerica|type=transcript|length=5022bp|location=Sequence derived from alignment at sc0000090:304587..309608+ (Clytia hemisphaerica)
CACAAATTAGTTTCGCTCGAGATAGAGAGGAAGTTAGACCTCCGAAGAAT
CACAGGTCAGGCTAGTTATAAagcgaaaattttggaaataatagAGAACC
TCTCCTCAACAATAAGCAGTCGGTGGCTGGTACGTATTACTATTTCtatg
tcattctttttttattgttcttttttgtgGATTTGGTTCTACGTTTCCCG
ACAAAATGTCCTGGCtggaaagttttttgaaaagaaggcTAATATAGCAA
AATTAGAGCAAAagatgaaactttcaaaaatattttcacaacAATTAATA
AGGGGGGTGTGTGTTAGAATTCATCCTCCAAAACCTGGTTGTGGACGCCC
ATAAAAGTTCCATCTAAATCAATATTGTAATAAATATAGCTATCGATTAA
TGTGCGTTTAGGTTTTTCACACCTTTCTCAGCATTAGAaacaaagtttca
aaatttcaaaaaagttttgatctaaaaattcaaagactcagaaaattgaa
tatttaaaagtcttttaaaaGTCTTCTGCCTCAAATTGTGACATGATATT
ctaatcttaaatatttttaactacGATAAccaattaataattaataaaca
aACCTTGGGTTTTTGACTTCACACCAACCATTGCCAGTGCCAACTCAGCT
ACGGTACTCTTTCGAGTACCTGGTAGCCCATATAAAAGTGGCACTGCCAA
CTTGTTTGGGGTGGTTTCCTTGAGTTTCGGGTAGCTCCACAGCAGGATGG
AGGCCGCGATTGTAACGCAGGCGGAACTcaaattttctggaaatttggtC
TTGAGAAACAGGATGACCTCTGACAATGGCTTGACTTCGTATGTCaggtt
ttctgtcaaaatagAAATTAAGGAAGAATAAGATAGTTGtcgagaaaatt
tgaaattttgattttttttctcgtaaaTTTGACAAATGTTTTGGATTACT
ATGAGTTTAATTGTGACAAGAAGTTTAAGGTTTAAATACGTTACCAATTC
TCCTCGTGGATTGATCATGAGACACGAGTTTAAGTTAGTATCTCTCCTCT
AACATCTAGGGGTCCCCTAGTTATTTCCCTAATATTTTAGGTGATTCTTA
CAAGCTATACTTAATTTGGATGAGTTCACATatttattttgtcaaatttt
tgcatttttttgactttgtgccttaaaatctcgctggaaagattcacttt
tgaatttctttttgcgtgaccatgaaacccaatccaattcctacgagtta
gaccaaaaatgacgattttcaaactgggCATTGCAGGAGGgtttcgccct
cctatatagcgcatgtctagtatactcgtcattggtacttaaagggttaa
acccAATTTATATGTGACAAGTCGCCCTTATCCAAAAGTATAACCCTCAC
CTTATTTACCAGTCAGTTAAAGTGTAggcaaaattttacttttatttttt
gaaatatcctccatactttctgaccactccgttaaaggttttattcagca
caatataacaatagggtgACACCTTCCTGATaagaaacgggaacacttac
gtaaaaataaaatattttaagtaGTAAGGATATAATTATACCTGGTATAC
GCAATGATGTTGTCACGGCATTACAATCCATCCAATACCCAAACTCAACA
CATGTTTTCTCTTCGATTCCTTCGTCGCTCtctttgaaaaatctaactCC
CGTTTCAGAGGGAAGGACCCACAACAAACGTCCGTCTGTGTGTTTTTGCA
CACCATACTTctaaaatatagaaaatataGTTTCTTAGATTTTTTGGGCT
ATAAAATCATACATGAAAAAAGCTTTTGTCTGTCTCAATATTTATGGTCT
TAATACCCCGGTCAAAAATCGTATCAATTAAGGTCAGGGCAAGCCAATGA
TGGATGAAATATTAATCTAAACTTTATACTAAAATGCTACTAGAATTATT
TGAAACTAAAGAGACGCGCCCTAGAGAAAAAGGAAGAATCAGTTATGTTA
CAGTTTTTTATGGTAGACTTACTCTTTTTCGGCTTTGTTGCAGAGTTACC
CTTATATAATGGTCTGTAAAACGAGACTAATatgaaatgttggatgaaaa
actaaaaactttaaatgaaaatctaaataAACTCTTTGATGTTGAGGCAA
ATGTTGGACGTGTTCATCGAACACGTCTTATTTTCCTTCTTTACATTAAG
AAGCAAccggcggagagattttttagaaatatgcgTTCTTATCTCTTCtg
aaatctaggaaaaacagtttgccaagataaacttgtaagatatttgtttt
tctccacgaaagatgtgttctgaaaatttctagagttactaggcaacaag
attacgtcaattttctcttgattatacccctgtcttcttaaaagatgtgt
tctgaagctttctagggttacttacctagacaacaagaacacatttagat
gaccttgattatactcctgtctcgtcagaacacatcattttttctggctg
atttatttcgaaaatctggTCAGAatagatcaaattttctagttgaaaat
atgctctcagaacacatctgAAAATAGGTCGcgtcgccggctgctttcgt
atATTGGCAAAATCCGGTCcaacatttcaaaaataaatggcATGTTGGGT
GAAGTGTTGGACCGGTTGGACCGGTGGACCGGTTTGCTCCAGGAAAGCCA
GACTCGCTAACCCCGGTGAAAATAGAGTAAAAAGTCACCCCTCATCCAGC
GAGTTTTTGATATCTCATATTCAAGCCcagtgaaattttattttcttctt
ctttcatttAATTAATGTTTTTTGATATTGTTCTATCTGATGAAATTCCA
CTCTGTATTTATTATTCAAAGTTACGCTAAAAATTCGTTTATGAAAAAAG
CCCAAATTACGCAAATCACTGGGGGCTAATGATAATAAATTAAATGGTAA
AAACTTACTGTAATTGGACTCAATACCACCGCATCGTCACTTTCGTCGTA
TTTGTCCGCTAATATCTTCAAATACTGAGGTAACCAATCAATTTTAGTGA
GATGCCAAATGAATTTTCCTCTCTTCAGGGAGGAGATAATCTTTGTCTGC
GATGACATAGTTTCCATCGTTAGGTACGTAGAAAAATTCCTATAAAGAAG
ATAATTTGAAGCTTATAAAACATTTCTTCCAGTCGACAGGAACAGGAAAT
TTTCATCCGCGAGAGTATGAGAGTAACAGTTTGTCTTTCTCTGAAAGTAA
GCCTGTGACGACAGACTGACTAAAGTTTATTAcacatgacccccccccct
caataTGCTCGAAAGGTTAATGCACGCGGAGTGAAGTTTCACTTTTCTTG
AGAGAGAGAATTCACTCAAGTGAATTAATCTCATTGTTGTATACtctaat
gggataaactttcgcggggattaaatttcgcggatttcgcggatttgggt
gtcatccgcgaaaattcgcgaaatttaaagtctcaatggaaatttggaag
gacctgatccgcgaaatatttctaaacaaaactcaaaatatgtcaaataa
atacttttggaatggttacttgcatcaaagaggcgtaaataatgtgtatt
tcaacaaccaacatgtatgatttgacagtgaaagtcaaaaatcgtgaaaa
tattgacacccaataggcccaaccgcgaaatttaatccccgggaaagttt
atcccattaaagtagtcaTACCTTTGTATAGAAAACTTTgtgtatgattt
ttttcttcgtgCTTATAGTTGCACTTTTGTTAAGCAAAGCGTTTTGATAA
AGCTACCAATGATCAAATGGTGAAATGGCTTCAAAGTCGAGTTTAAAGTT
AATTAATAATTGATATAAGACGGAATTGCGCtaaatttcgctaaatatca
agttatAAACGAAGGTTCATTAGTCTAACAGtctgagccccccccccccc
agNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCAGTGGTcggcgtg
atggagggttttgcgtggtgtgatggcgtgaaattttgaaaagaaatggc
gtgatggcgtgaaaatgaagtgtcGGCGTGATGGtaaaatcgagtttttt
taggcgtgatggcgtgaaattttcagttcagcgtgatcgtgaaaattata
tttattacttaAATCGTAATTCtttgtccattttagccaatttagagggt
ttaaatcaCAAAAACTCTCGTGGCCCctgatttttcatattttataagat
gcttttaGATACAAAAACGACTCAGGATTTGGTACGGCTCCTACTACTAC
TAGAATACATTAAATCTGTCTCGAAATCGAGATTTCGGTTGTTGTTTCAT
tgtgttttcaattttcattgtcTCTTTGACAAGATTTTAGAAGGTTAAGA
AAATAATTTCCACAAACATAACGGTGGAACGCTACACAATTAAAGCTTct
attgattatttttttctttttatgttcCAATCTGGACAGACTCGTACAAT
TGGTTATCAGGGAACGTCATGTTAACAACGCCAAAGCAAAATGACTAAAC
GCATCAAAACGAAAATACATCACCAAAACTAGACAGATTGCAGGAGAATC
AAACATCACGTATTATATGAACAATGTTTTACTGGATTCATGAACAAAGA
CAATCAGTTATAAAAAGAACTTTGTGTTAATGACACGACGAAAAAAGTCC
AAGATGTTTTTTTGGACTGAATTTTGTGTTCTGTTATAATCAGAGCTGAC
AAGAGACATCTATTCGAAAATCCATTGGcaaataaataaagaataatCAG
ATGACAAACAGTTTAATTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009095-exon-sc0000090-1491911889:304587..304715 | TCONS_00009095-exon-sc0000090-1491911889:304587..304715 | Clytia hemisphaerica | exon |
| TCONS_00009095-exon-sc0000090-1510915933:304587..304715 | TCONS_00009095-exon-sc0000090-1510915933:304587..304715 | Clytia hemisphaerica | exon |
| TCONS_00009095-exon-sc0000090-1575043694:304587..304715 | TCONS_00009095-exon-sc0000090-1575043694:304587..304715 | Clytia hemisphaerica | exon |
| TCONS_00009095-exon-sc0000090-1491911889:309276..309608 | TCONS_00009095-exon-sc0000090-1491911889:309276..309608 | Clytia hemisphaerica | exon |
| TCONS_00009095-exon-sc0000090-1510915933:309276..309608 | TCONS_00009095-exon-sc0000090-1510915933:309276..309608 | Clytia hemisphaerica | exon |
| TCONS_00009095-exon-sc0000090-1575043694:309276..309608 | TCONS_00009095-exon-sc0000090-1575043694:309276..309608 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:304587..309608 + |
Blast
The following BLAST results are available for this feature:
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