TCONS_00009091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009091
Unique NameTCONS_00009091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009091 ID=TCONS_00009091|Name=TCONS_00009091|organism=Clytia hemisphaerica|type=transcript|length=922bp
ATCCAATATCTAGATAATCATGACATTCGACAAACTCTTTCTTGATAAAA
ACATACTTTGTTCCATCGATTGGAGACAAAACgttttcttgttttctatt
cGTCAAAATCAAACTGATTTCTCGATACCAGACTTCATAAGattcgaaaa
cattttcttcCCATTTTTTCCCTTCAAAGAAAGTATCAGCTCCCCAAGCT
AACTTTTCCACTTTTGTGAAATGCTTCtgaggtttttcttttttgacaga
TACAACTTTCTTGGGTTTGACCACATCGTTTGACTGGTTGTTCTTTAACT
TTAACTTTTGAATCTCGTTTCGAAGTGTTTGGATTGTTGCGTCTTTTTCT
TTCGTCAACGCAACAAGTTTCAGGTTGTGATCATTTACCAAATCCTTGAT
TTTTGTTTGGTTGgtattttccaaatctttaagTTTCAGGTTGTGAtcat
tttccaaatctttgattTGAAGTTTGAAGTCGTTTTCTTTTCCCAGAATC
TCCTGGTCTTTTGTCATCAGTTTCATTTTGCATTCGTTGTCCTTGGCTGC
AATCTCCTTGTCTTTCTCGTTCAGTTTTAACGTTGTCTCATCTACCTTAG
TTgcaatttccttgtttttaattacaagctgtttttccatttcattcaGT
TTATTTTGAAGCTCGTGGTCggcttgaatttttttcgactCTATCCTATG
CGAATGTTTCAAATTAAGCAGCTCCAATTGATGTGTTAAGTTGGCATTTT
TCATTTGTGCTTCCATCAATTCTATCTTTGATTCGTAGGTcattttttcg
atttcttttcgatgttcttctttcaattttttgatttcaacaCTATCAGC
TTTTTTCGGAGGATTTCTATCATTTGCGCTGTGCGCTAAATTTCTCTCCT
CCattttatcgaatgatttaaA
Run BLAST on NCBI

transcript from alignment at sc0000090:172365..183710+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009091 ID=TCONS_00009091|Name=TCONS_00009091|organism=Clytia hemisphaerica|type=transcript|length=11346bp|location=Sequence derived from alignment at sc0000090:172365..183710+ (Clytia hemisphaerica)
ATCCAATATCTAGATAATCATGACATTCGACAAACTCTTTCTTGATAAAA
ACATACTTTGTTCCATCGATTGGAGACAAAACgttttcttgttttctatt
cGTCAAAATCAAACTGATTTCTCGATACCAGACTTCATAAGattcgaaaa
cattttcttcCCATTTTTTCCCTTCAAAGAAAGTATCAGCTCCCCAAGCT
AACTTTTCCACTTTTGTGAAATGCTTCtgaggtttttcttttttgacaga
TACAACTTTCTTGGGTTTGACCACATCGTTTGACTGGTTGTTCTTTAACT
TTAACTTTTGAATCTCGTTTCGAAGTGTTTGGATTGTTGCGTCTTTTTCT
TTCGTCAACGCAACAAGTTTCAGGTTGTGAtcattttccaaatctttaag
TTTAAGTTTGTGATCATTTACCAAATCCTTGGTTTTTGTTTGGTTGagat
tttccaaatctttaagTTTCAGGTTGTGAtcattttccaaatctttaagT
TTAAGTTTGTGATCATTTACCAAATCCTTGATTTTTGTTTGGTTGagatt
ttccaaatctttaagttttagtttgtaatcattttccaaatctttaagTT
TAAGTTTGTGATCATTTACCAAATCTTTAAGTTTAAGTTTGTGATCACTT
TCCATATCTTTGATTTGAAGTTTGAAGTCGTTATCTTTTCCCAGAATCTC
CTGGTCTTTTGTCATCAGTTTCATTTTGCACTCGTTGTCCTTGGTTGCAA
TCTCCTTGTCTTTCTCGTTCAGTTTTAACGTTGTCTCATCTACCTTAGTT
GCCATTTCCTTGTTTTTCATTACAagttgtttttccatttcattcaGTTT
ATTTTGAAGCTCGCGGTCGGCTTGAATTTGTTTCAACTCTATCCCATGTG
AATGTTTCAAATTAAGCAGCTCCAATTGATGTGTTAAGTTGGCATTTTTC
ATTTGTGCTTCCATCAATTCAATCTTTGATTCGTAGGTcagtttttgaaa
ttctttttgatgttcttctttcaacttttttatttcaacactATCAGATT
TTTTCGGAGGATTTCTATCATTTGCGCTGTGTGCAAAATTTCTCTCCTCC
ATTTTATCGAATGATTCAAAACTCCCTCAATATTCTGTGTCGCACACATA
AACCTCTCTCTTTTAAAATTTCTCATCCACAAACTCAACACAAAgtacac
aaaaacaaaacatacaaTCTCGTATTACTATTTGGCTTCAAAAAAGCTGC
TCAAATATCTTTTCGATCGAAAAGGGGGTTTCTATGACAACacagtttta
aaaagaaattcttagaATTCCTTCTCTTTATCTCATAATGGTGTTTATGA
ATCAATGAAAATTACAACTTTCTTGATATCACCAAtcattggaaaatatt
ttttggtaaatcggagaaaaatttgacacaccaatagactggagtcgttt
ataatgcgtgtaatactaataataccaatactaataataacaataataat
aataataataattttgaagttttgaggCAGATAGAAAAAAAGATCAACAC
AAGAGAAAACACAAGAGGTAGCTGGCTGACGGAGATCGAAGTTGACGATA
TGAGACGAACCATTCAGTCCGAAATCAATGACGAACGACATCAACCAGTC
TACCAACCAAATCAAGAAGAAAACCAAACCAATCAACCAGACCAACCAGC
CGAAACGGAAGAGAATCTACCACCACCGCCACTTCCACCACCCGCCATCC
AACCGAACGTTGAACCGCTTGCAGAACATATAGAGAACGAAAACCAAGAC
GAAATTGACAGAGTAAGAACTATGATATCTCGGATGTATGCTATAGCCAA
TATTACACCTTTTGAGGACCGTTATACCTTTCGAAAGCCGGGGAAAAAAC
AGGAATTTGAACTtaaaaaagctttgcaaaaaaTCAACAAAGCCCTTGAA
GGCATGCCATTGCTAACCGACATATCTGACGTCAATCAACTAAATGACGT
CACTTATGGGTGTGCCTTCCTTTCTATCAAAATTGCGCAACTCGAAAAAC
AATGTCTGGTAAGAAAACAAGATCGGCGCCAAACGAAAAAGAGCAACTGG
CAGCACCAGATGAAAGTTCGCATCGACAATCTCCGCACCGACATCAACAA
AATCGAGCAAATGTCAATCGTTGATCCATCGTCAAAAATCAAACGAAACA
ACAACAGTATGAAAATCAAATACAGCATACAAGACGAACAATCGCGAATC
CAAATCCTAGAAACCTTGAAACAACGTTTGATGGCGCTCAACAACCGTCT
AAAACGATTCATCAAACGTGAAAAGCAATACCACCACAACAACACGTTTG
AAAATGATCCGGGCAAGTTCTACGACGAAGTGCGCGATAACAAAATACAC
ATCAGCGAACCTCCAACAGAGCAAGACATCAACTCGTTTTGGAAGCCAAT
ATTTAACAACGAGCAACATTACAATCAAGATGCGTATTGGCTCGACGAAT
ACACAAATGACGTAAACGAACAGATTGTCGAATCCGAATATCAACCCATT
ACGAGTGAAGAGGTTAAATCAGCAACTTCCAAATTCCAGAACTGGAAAAG
CCCAGGCATAGACAAAATCCATAACTTCTGGTGGTGCTACTTGACTAACC
TACACCCAAAGATAGCAGACATACTCCACCAAACTATCAACAATCCCAAC
GATACACCTCAATGGCTGACAACTGGACGTACAACCCTTGTTCCGAAGAA
AGCCGAGACCAGAAACCCTGCCAACTATCGACCCATCACATGCCTGCCAA
TCATATACAAAATCATGACGAGCATTATAACGAACCGGATGAAGAACCAC
ATCGACCAAAACCATCTGGTCCCGGACGAGCAAAAAGGATGCTCGAACAA
AACCTACGGTACCATCGATCAACTGGCAGTCAATGCAATGGTGATGTCAG
ACGCCGTCAAGAAATGCCGCAATATCAGCACTGCGTGGATTGACTACAAG
AAGGCATTTGACTCCATCCCTCACGACTGGCTAATTGAATCGCTCAAAAT
CCACAAGTTTGATCCTACCACCANNNNNNNNNNNNNNNNNNNNNNNNNNN
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AAACAATAGGTTTATCATAAGTAAAATAGGAATGCAAAACAAGCTTTGTA
TGCCTCAGTACGAATGATAAGCGCACTGTTGAAAAGAGGAACCCACAGAG
AGTTTCAAGCGGTTAAgaaataatacaaatttaaacacaattttttattt
ctagtatTTCTCTAGCTTGTTTggaaatcaaaatttgagaacTCTACTCT
ACTAAACTCACCGAACACAATTTTGAAACAATATATTTTCAAGATTACGA
GCAATTTTCTTAACTCACAACCTTAAATTCAATCAAGCTATTCAAGTCAT
CTATAGCCAAAACAAATCACCTCCAAATAGCTTTATTTGATAGGCTTTTT
GATAGTCTTACAATATAGTTATTATATTATCCTAaatcaattatttattt
taaatattagtattttaagtgtttttgacTGACCTTCTTTAAGATCTATC
TAACCAAGCCACGACATCTTTGAAACACTGTCAAGTTCTTTTAGCCCTTG
TTTTGCGTTTTCGATTCAGAAAATCGGTTGTTACGTTatgtttttatcta
ttttagtACGAGGTGTACTCTTTATACATTATAAACAGGAATCCTTTATT
GTACTATTTACCTTATAAATACGAAAAGAAATGAgtgaaataataataat
aataatacgggatttagtttgtataaacgactggaagaatccggtgttcc
agccttatagatacaggggctagctacgcagaaacttgcgtagcgagaaa
acaatttatcaagcaataaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNaactcaaatgaaaaactttcaatacacaaatccacatac
atgtttttctcaagaattattttgagcgggaaaaagattataattgcaaa
tattgacacttttcttttgtttggagttagtgcacaaaggtttctagacg
actaaaattgttccctttattactttttgctttatttctactatgtgtga
attagtcgtctagcttgctagactaacaCACCAACGAAATACTTTGTTGc
tgctgtttttataagaacgtccaaatTTTTTTAAGCCTGCGAGTGTTTAT
AGCTTTGagtttaagcttaaaaatgtttttaaaaaaaaatttcctttgtc
cCAAAGGTCCCAAAGGTcccaaggtcccgagatgaAGTCATAAATTAAAC
ACAACCGGCCAAATTATCGTCTCCGTTGGCATgagaaattcttcaaattt
ttgtccctactaataaaccaatcctcgtgcaaaatgttgtgctatttttc
ccatccctaGTGAATtctctgacttgaaaacaaaagaagttaaatcacag
ccataaaaaatatgggaatataaatccccattgagtttcagtccgttatt
tttacccccccccccactagctgaaaaaatcctaccgggtctttgAGAAG
GACCTATGTAAGTACGGGATGTATTTGTTAACACAGCCAATAGGTGTTTA
CTTTATTTCACATTCAAGAAATACAATCCATATACaaatttaataatatt
ttcatGGGAGCGCCTCGAGTCAGGGTCCTATTTAAGACTAATTTACCAAC
TTTTTGTAGAATTATCTCGCAAGGTTGCATcgatgagaaaaaaatctatc
gTCTATTAAgcgctattgatttgattcttataaagtagatgcttataaga
aaataaatattatcatattgtgcaccgttccttgtttactttgtaaaaac
taaaaggGTATTTTACCCGCTATCAagcgttattgatttgattttaataa
agtagatgcttataagaaaaataaatatgctcatattgtgcaccatcCCT
TGCTTATTTTGTAAAAGCTAATGACAGAAGGGTATATTACCCGCTATCAA
GCGTTATTGATGTGATTCCTAGGGGGTACATGTATATTTTAGGGTGTATT
TGGTATTCGCATCTTGGGACCTTGGGACCTTTGGGACCTAGGGGGTGTTT
GTATATtgtggggtgtatttggtatattctcatctcgggacctttggatc
ttcgggaccaaggggtacaagtattttttggggagattttcatctcggga
cctcgggaccttcgggacctagAGGGTACATGTGTTTTGTGGGGGTGTAC
AACATAATATCACGAATATAGAACtggttcggtaaaatacacagGAAGAA
ATCTTTAGCCGacgttgtaaaaactccagatcatccgaaaatgttaagaa
catccaaaagcttcaaaaattttggatgttcttataaaaaaacttgaatt
taCTTTCGAAAGTCATTATTAAATAAACTCTTTGATAAAGCAGAAAAGTG
TAAAGGGATAGAAAAACAAGTTCTCTGATTAGTGTAGCGATCGTTTCTAT
CGTACAATGTTaagtaaataaaatataaaggtaaataaaagtccagaaaa
gactatataaatcggacggtttctacatgctttgacgataaaaatgaaga
tgtgtTTTCCCTTTTTCACTGCTTACcagtaaattaatttttttgaatag
gTAAAAAGTTCTATACCAATGTACGTTAAAAACATTCTTAATACCATTGA
TTTTGGTAAAACTGGCAGAATTCGTCTAAAATCGACATTAAATTATAATT
TTCTTATGCTCGCTTTTTTACTAAAAGATAACGATCGGTCATGATTGTTA
AGTTTTCACGTAAACAATTGCTGAGATTTTATCACCAAAGTAAAAGTCTT
CCGGTACTTCATCTTTCCACCAGCAATCAACCCAATCATTTGTTACAAAC
TTCAAATGCTTTCCACGTATTGTTGGATGGAGAAGGAAGAATTTTCCATA
TTCCATCGTTTCTTCGTTCACACCTTCAAACATTATGTCACAATCTTCTT
CTATGATACCTACGTTTTCTTTAAATCCAATATCTAAGTGTTCATGACAT
TCGAGAAACTCTTTCTTGATAAAAACATACTTTGTTCCATCGAATGGAGA
CAAAACgttttcttgttttctattcGTCAAAATCAAACTGATTTCCCGGT
ACCAGACTTCGTAAGATTCGAAAGCATTTTCTTCCCATTTTTTCCCTTCA
AAGAAAGTATCAATTCCCCAAGCTAACTTTTCCACTTTCGTGAAATGCTT
CtgaggtttttcttttttgacagaTACGACTTTCTTGGGTTTGACCACAT
CGTTTGACTGGTTCTTCTTTAACTTCAACTTTTCGATCTCGTTTCGAAGT
GTTTGGATTGTCGCGTCTTTTTCTTTCGTCAACGTAACAAGTTTCAGGTT
GTGATCATTTACCAAATCCTTGATTTTTGTTTGGTTGgtattttccaaat
ctttaagTTTCAGGTTGTGAtcattttccaaatctttgattTGAAGTTTG
AAGTCGTTTTCTTTTCCCAGAATCTCCTGGTCTTTTGTCATCAGTTTCAT
TTTGCATTCGTTGTCCTTGGCTGCAATCTCCTTGTCTTTCTCGTTCAGTT
TTAACGTTGTCTCATCTACCTTAGTTgcaatttccttgtttttaattaca
agctgtttttccatttcattcaGTTTATTTTGAAGCTCGTGGTCggcttg
aatttttttcgactCTATCCTATGCGAATGTTTCAAATTAAGCAGCTCCA
ATTGATGTGTTAAGTTGGCATTTTTCATTTGTGCTTCCATCAATTCTATC
TTTGATTCGTAGGTcattttttcgatttcttttcgatgttcttctttcaa
ttttttgatttcaacaCTATCAGCTTTTTTCGGAGGATTTCTATCATTTG
CGCTGTGCGCTAAATTTCTCTCCTCCattttatcgaatgatttaaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005095XLOC_005095Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009091-exon-sc0000090-1491911889:172365..172737TCONS_00009091-exon-sc0000090-1491911889:172365..172737Clytia hemisphaericaexon
TCONS_00009091-exon-sc0000090-1510915933:172365..172737TCONS_00009091-exon-sc0000090-1510915933:172365..172737Clytia hemisphaericaexon
TCONS_00009091-exon-sc0000090-1575043694:172365..172737TCONS_00009091-exon-sc0000090-1575043694:172365..172737Clytia hemisphaericaexon
TCONS_00009091-exon-sc0000090-1491911889:183162..183710TCONS_00009091-exon-sc0000090-1491911889:183162..183710Clytia hemisphaericaexon
TCONS_00009091-exon-sc0000090-1510915933:183162..183710TCONS_00009091-exon-sc0000090-1510915933:183162..183710Clytia hemisphaericaexon
TCONS_00009091-exon-sc0000090-1575043694:183162..183710TCONS_00009091-exon-sc0000090-1575043694:183162..183710Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:172365..183710 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.117322	0	0	0.199305	2.43988	3.20156	2.43526	2.365	1.66816	2.08781	1.07122	0.864221	1.18178	2.05788	1.0306	0.606946	0	0.246031	0	0	0.144487	0	0	0.105453	1.91891	2.53968	0.00780737	0.0456736	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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