TCONS_00009075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009075
Unique NameTCONS_00009075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009075 ID=TCONS_00009075|Name=TCONS_00009075|organism=Clytia hemisphaerica|type=transcript|length=487bp
CTTGCCAGCAGGCTTGTAATCGATGGCTGTTTTGCCAACTTTTTTCTGTT
TCTTGCCACATTCATGGCACGTCATTTGGTTGCAAAAGAGACGACGACTG
CAATCCTCATTTTGACATTCCTAAAAATAGAATTGAGTCTTTTTAATAAG
GGTTACAAACAACAAATCGACAACAGTCCTCTTCGTATTTTTGagacaaa
aatggaaaaaattccaaattatttgaaaattctataaaaaaacaccaaga
aaaagtttcagaaatccaagaaatttttatttagcATCCCTTCAGTTTAG
TTCCCAGTCCTGTCAATTCAGGTCGGCATTCAACAGTGTAAAACTTAAAG
CCgaactcaaatgaaaaattggtcGGTCAGTCTGTCGGTCAAtcagtcag
tcagtcattcAGCAAATAAACCAATCAATTCTTCATTCAGTCAGTCATTC
AGTTCCATGCCTTGCGTTTTAAGTTCAGTCCGTTGTG
Run BLAST on NCBI

transcript from alignment at sc0000089:635670..636156

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009075 ID=TCONS_00009075|Name=TCONS_00009075|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at sc0000089:635670..636156 (Clytia hemisphaerica)
CACAACGGACTGAACTTAAAACGCAAGGCATGGAACTGAATGACTGACTG
AATGAAGAATTGATTGGTTTATTTGCTgaatgactgactgactgaTTGAC
CGACAGACTGACCgaccaatttttcatttgagttcGGCTTTAAGTTTTAC
ACTGTTGAATGCCGACCTGAATTGACAGGACTGGGAACTAAACTGAAGGG
ATgctaaataaaaatttcttggatttctgaaactttttcttggtgttttt
ttatagaattttcaaataatttggaattttttccatttttgtctCAAAAA
TACGAAGAGGACTGTTGTCGATTTGTTGTTTGTAACCCTTATTAAAAAGA
CTCAATTCTATTTTTAGGAATGTCAAAATGAGGATTGCAGTCGTCGTCTC
TTTTGCAACCAAATGACGTGCCATGAATGTGGCAAGAAACAGAAAAAAGT
TGGCAAAACAGCCATCGATTACAAGCCTGCTGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005087XLOC_005087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009075-exon-sc0000089-1491911889:635670..636156TCONS_00009075-exon-sc0000089-1491911889:635670..636156Clytia hemisphaericaexon
TCONS_00009075-exon-sc0000089-1510915933:635670..636156TCONS_00009075-exon-sc0000089-1510915933:635670..636156Clytia hemisphaericaexon
TCONS_00009075-exon-sc0000089-1575043694:635670..636156TCONS_00009075-exon-sc0000089-1575043694:635670..636156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:635670..636156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06283	3.85787	0.722477	0.424099	2.9257	1.35996	2.13295	3.53287	2.25836	1.46528	4.39599	2.63477	2.88574	2.73244	4.34794	4.97707	2.87407	5.1061	1.62793	2.98114	5.79924	4.87494	0.877944	1.59636	0	0.366855	1.39991	1.68078	0.849875	1.0102
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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