TCONS_00009072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009072
Unique NameTCONS_00009072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009072 ID=TCONS_00009072|Name=TCONS_00009072|organism=Clytia hemisphaerica|type=transcript|length=551bp
CCTTGTTTGATTTGAACAGATCTAACGTGACCATCTGGACTCTCGTGTAA
TTTTTGAACAAGAGCGAGTTTCCAACAGTTTCTGTTGTTGTCCTCTTTCA
TAAGAACTACATCACCAATCGCTAGATCTCGTCTGGTATTGCACCATTTT
GATCGAGCTTGTAAATTTGTTAAATACTCTTTACGCCACCTGGACCAAAA
TTCGTTTGCGATGTGTTGTACGCGTCTCCATCGTCGTCTGCAGAACACGT
CTTCTTTGACAAAGTGGCCAGGAGGAGGCATTACCACGCTGGATTTCATC
GTCAAGATGTTGGATGGTGATATCGGCGTTAGACTAGTTGGATCGTTGAT
ACATTCGACTGTCAACGGGCGTGAATTGATTGTAGCTTCGACTTCTACTA
ACAGTGTACGGAATGATTCGTCATTGAGTGATTCACCATGTGTCATCATC
AGTGAGGATAGAATTGCTCGTGTTGTTCTGATCATCCTCTCCCACACACC
ACCGTGATTGCTTGCTGTAGGTGTGTTGTGCTTCCAAGAGATGAAGTCAG
C
Run BLAST on NCBI

protein sequence of TCONS_00009072-protein

>TCONS_00009072-protein ID=TCONS_00009072-protein|Name=TCONS_00009072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
ADFISWKHNTPTASNHGGVWERMIRTTRAILSSLMMTHGESLNDESFRTL
LVEVEATINSRPLTVECINDPTSLTPISPSNILTMKSSVVMPPPGHFVKE
DVFCRRRWRRVQHIANEFWSRWRKEYLTNLQARSKWCNTRRDLAIGDVVL
MKEDNNRNCWKLALVQKLHESPDGHVRSVQIKQ
Run BLAST on NCBI

transcript from alignment at sc0000089:548895..549445

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009072 ID=TCONS_00009072|Name=TCONS_00009072|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0000089:548895..549445 (Clytia hemisphaerica)
GCTGACTTCATCTCTTGGAAGCACAACACACCTACAGCAAGCAATCACGG
TGGTGTGTGGGAGAGGATGATCAGAACAACACGAGCAATTCTATCCTCAC
TGATGATGACACATGGTGAATCACTCAATGACGAATCATTCCGTACACTG
TTAGTAGAAGTCGAAGCTACAATCAATTCACGCCCGTTGACAGTCGAATG
TATCAACGATCCAACTAGTCTAACGCCGATATCACCATCCAACATCTTGA
CGATGAAATCCAGCGTGGTAATGCCTCCTCCTGGCCACTTTGTCAAAGAA
GACGTGTTCTGCAGACGACGATGGAGACGCGTACAACACATCGCAAACGA
ATTTTGGTCCAGGTGGCGTAAAGAGTATTTAACAAATTTACAAGCTCGAT
CAAAATGGTGCAATACCAGACGAGATCTAGCGATTGGTGATGTAGTTCTT
ATGAAAGAGGACAACAACAGAAACTGTTGGAAACTCGCTCTTGTTCAAAA
ATTACACGAGAGTCCAGATGGTCACGTTAGATCTGTTCAAATCAAACAAG
G

Coding sequence (CDS) from alignment at sc0000089:548895..549445

>TCONS_00009072 ID=TCONS_00009072|Name=TCONS_00009072|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0000089:548895..549445 (Clytia hemisphaerica)
GCTGACTTCATCTCTTGGAAGCACAACACACCTACAGCAAGCAATCACGG
TGGTGTGTGGGAGAGGATGATCAGAACAACACGAGCAATTCTATCCTCAC
TGATGATGACACATGGTGAATCACTCAATGACGAATCATTCCGTACACTG
TTAGTAGAAGTCGAAGCTACAATCAATTCACGCCCGTTGACAGTCGAATG
TATCAACGATCCAACTAGTCTAACGCCGATATCACCATCCAACATCTTGA
CGATGAAATCCAGCGTGGTAATGCCTCCTCCTGGCCACTTTGTCAAAGAA
GACGTGTTCTGCAGACGACGATGGAGACGCGTACAACACATCGCAAACGA
ATTTTGGTCCAGGTGGCGTAAAGAGTATTTAACAAATTTACAAGCTCGAT
CAAAATGGTGCAATACCAGACGAGATCTAGCGATTGGTGATGTAGTTCTT
ATGAAAGAGGACAACAACAGAAACTGTTGGAAACTCGCTCTTGTTCAAAA
ATTACACGAGAGTCCAGATGGTCACGTTAGATCTGTTCAAATCAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005084XLOC_005084Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009072-exon-sc0000089-1491911889:548895..549445TCONS_00009072-exon-sc0000089-1491911889:548895..549445Clytia hemisphaericaexon
TCONS_00009072-exon-sc0000089-1510915933:548895..549445TCONS_00009072-exon-sc0000089-1510915933:548895..549445Clytia hemisphaericaexon
TCONS_00009072-exon-sc0000089-1575043694:548895..549445TCONS_00009072-exon-sc0000089-1575043694:548895..549445Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009072-proteinTCONS_00009072-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:548895..549445 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.513157	0.441189	0.188094	0.609134	0.839364	0.477896	0.666846	1.17542	0.0874164	0.56188	0	0.315862	0.321685	1.03921	0.780044	0.225511	0	0	0	0.230075	0.100298	0	0.237884	0.216271	0.480093	0.346484	0.284486	0.2601	1.35665	1.69936
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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