TCONS_00009068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009068
Unique NameTCONS_00009068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009068 ID=TCONS_00009068|Name=TCONS_00009068|organism=Clytia hemisphaerica|type=transcript|length=306bp
AATAGCTTTTCGAACTAGACCTGTAATCAGTGCAGCTGCACCATTTTTAT
GACCAGCAGCATTCCCAGCACCATCAAACCCTTGACCCCTACATTGATTG
ATGTCAAGAGCAAGATCATCAACTCTTTTTAAAATAGTGTCCGAGATTGC
TTTTGCAGTGAGACCATCTTTTAAATGGACAAAACCAGTAAATTCCTCGT
GAATCACATTTTCTTCATCAATGTACCTTAAGACTAAAGATAGTTGCTCT
TTTTGAGAGCAATCCATAGCCTCATCTGCCATGATGGAAAAGAAGTAAAC
AGAAGT
Run BLAST on NCBI

protein sequence of TCONS_00009068-protein

>TCONS_00009068-protein ID=TCONS_00009068-protein|Name=TCONS_00009068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
TSVYFFSIMADEAMDCSQKEQLSLVLRYIDEENVIHEEFTGFVHLKDGLT
AKAISDTILKRVDDLALDINQCRGQGFDGAGNAAGHKNGAAALITGLVRK
AI
Run BLAST on NCBI

transcript from alignment at sc0000089:538497..538802

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009068 ID=TCONS_00009068|Name=TCONS_00009068|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0000089:538497..538802 (Clytia hemisphaerica)
ACTTCTGTTTACTTCTTTTCCATCATGGCAGATGAGGCTATGGATTGCTC
TCAAAAAGAGCAACTATCTTTAGTCTTAAGGTACATTGATGAAGAAAATG
TGATTCACGAGGAATTTACTGGTTTTGTCCATTTAAAAGATGGTCTCACT
GCAAAAGCAATCTCGGACACTATTTTAAAAAGAGTTGATGATCTTGCTCT
TGACATCAATCAATGTAGGGGTCAAGGGTTTGATGGTGCTGGGAATGCTG
CTGGTCATAAAAATGGTGCAGCTGCACTGATTACAGGTCTAGTTCGAAAA
GCTATT

Coding sequence (CDS) from alignment at sc0000089:538497..538802

>TCONS_00009068 ID=TCONS_00009068|Name=TCONS_00009068|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000089:538497..538802 (Clytia hemisphaerica)
ACTTCTGTTTACTTCTTTTCCATCATGGCAGATGAGGCTATGGATTGCTC
TCAAAAAGAGCAACTATCTTTAGTCTTAAGGTACATTGATGAAGAAAATG
TGATTCACGAGGAATTTACTGGTTTTGTCCATTTAAAAGATGGTCTCACT
GCAAAAGCAATCTCGGACACTATTTTAAAAAGAGTTGATGATCTTGCTCT
TGACATCAATCAATGTAGGGGTCAAGGGTTTGATGGTGCTGGGAATGCTG
CTGGTCATAAAAATGGTGCAGCTGCACTGATTACAGGTCTAGTTCGAAAA
GCTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005080XLOC_005080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009068-exon-sc0000089-1491911889:538497..538802TCONS_00009068-exon-sc0000089-1491911889:538497..538802Clytia hemisphaericaexon
TCONS_00009068-exon-sc0000089-1510915933:538497..538802TCONS_00009068-exon-sc0000089-1510915933:538497..538802Clytia hemisphaericaexon
TCONS_00009068-exon-sc0000089-1575043694:538497..538802TCONS_00009068-exon-sc0000089-1575043694:538497..538802Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009068-proteinTCONS_00009068-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:538497..538802 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.356415	0	0	0.49289	2.72642	3.28931	2.63949	0.61599	1.1445	0.370295	0.730252	0.243079	0.25244	0.41508	0.668166	1.0975	3.09348	1.94264	0.813134	0.353381	0	0	0.380994	0	0	0	0.534857	0.40567	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025398DUF4371
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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