TCONS_00009061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009061
Unique NameTCONS_00009061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009061 ID=TCONS_00009061|Name=TCONS_00009061|organism=Clytia hemisphaerica|type=transcript|length=319bp
ataataatGAAATCTCATGTTTCTCGAAAGAAAATGCTGGTCTTGATcgc
ttttcttttattttcttcattttcacttcATTTACGTTTTCATTTTCTTG
GTTTTTCTTTTGGAGTGAAAGcgagaaaaagaagaactttttgGATAAGA
AGATATggataaattttactttttggaAATATTGGGTTACTGTACATACT
GTATATATGTGGTATCTTCCTGGTATAAAGTTGTTTGAGACGAGTTTTAT
ATAGCATTTGTAAAGTTGGGCAAAGTTGTTTGTTATAATATTTGtgactt
tcttttttttacagcTATT
Run BLAST on NCBI

protein sequence of TCONS_00009061-protein

>TCONS_00009061-protein ID=TCONS_00009061-protein|Name=TCONS_00009061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
NSCKKKKVTNIITNNFAQLYKCYIKLVSNNFIPGRYHIYTVCTVTQYFQK
VKFIHIFLSKKFFFFSLSLQKKNQENENVNEVKMKKIKEKRSRPAFSFEK
HEISLL
Run BLAST on NCBI

transcript from alignment at sc0000089:391770..392088

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009061 ID=TCONS_00009061|Name=TCONS_00009061|organism=Clytia hemisphaerica|type=transcript|length=319bp|location=Sequence derived from alignment at sc0000089:391770..392088 (Clytia hemisphaerica)
AATAgctgtaaaaaaaagaaagtcaCAAATATTATAACAAACAACTTTGC
CCAACTTTACAAATGCTATATAAAACTCGTCTCAAACAACTTTATACCAG
GAAGATACCACATATATACAGTATGTACAGTAACCCAATATTtccaaaaa
gtaaaatttatccATATCTTCTTATCcaaaaagttcttctttttctcgCT
TTCACTCCAAAAGAAAAACCAAGAAAATGAAAACGTAAATgaagtgaaaa
tgaagaaaataaaagaaaagcgATCAAGACCAGCATTTTCTTTCGAGAAA
CATGAGATTTCattattat

Coding sequence (CDS) from alignment at sc0000089:391770..392088

>TCONS_00009061 ID=TCONS_00009061|Name=TCONS_00009061|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000089:391770..392088 (Clytia hemisphaerica)
AATAgctgtaaaaaaaagaaagtcaCAAATATTATAACAAACAACTTTGC
CCAACTTTACAAATGCTATATAAAACTCGTCTCAAACAACTTTATACCAG
GAAGATACCACATATATACAGTATGTACAGTAACCCAATATTtccaaaaa
gtaaaatttatccATATCTTCTTATCcaaaaagttcttctttttctcgCT
TTCACTCCAAAAGAAAAACCAAGAAAATGAAAACGTAAATgaagtgaaaa
tgaagaaaataaaagaaaagcgATCAAGACCAGCATTTTCTTTCGAGAAA
CATGAGATTTCattatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005073XLOC_005073Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009061-exon-sc0000089-1491911889:391770..392088TCONS_00009061-exon-sc0000089-1491911889:391770..392088Clytia hemisphaericaexon
TCONS_00009061-exon-sc0000089-1510915933:391770..392088TCONS_00009061-exon-sc0000089-1510915933:391770..392088Clytia hemisphaericaexon
TCONS_00009061-exon-sc0000089-1575043694:391770..392088TCONS_00009061-exon-sc0000089-1575043694:391770..392088Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009061-proteinTCONS_00009061-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:391770..392088 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.714442	0	0	0	0	0.271748	0	0	0	0	0.445461	0	0	0	0	0	0	0.623584	0.912487	0	0	0	0	0	1.41573	1.07378	0.364672
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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