TCONS_00009059 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009059
Unique NameTCONS_00009059
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009059 ID=TCONS_00009059|Name=TCONS_00009059|organism=Clytia hemisphaerica|type=transcript|length=702bp
cttttaaaagatttctcaCAGGGAAAGTtataatgaagaaatttttaaat
gaagcaGATGTATAATTAAACTTAAAAACAAAGCTATAAAACTAAAGAGA
AAATAAATCTTAAGATTAAGGAAACCATTACTTGTCACTTTTGACCAGTG
TCCATCCTTCTTTGGTGCACTTATGTAACTGTTCTGAATTACCAACAAGC
CTTGAAGAACTCCGTGAATACAATGCCAAAATTTCTGTTTTAGAAGAATC
AAACTCAAGCCAATATGTGAATCCACCATACATTCCAGGCATATTGAAGT
AAACTTCTTTATCCTTTGAAACGTCTTCTAAAAGGACTGACAGGATTGGT
AAAATCACATTATACTTCTGAACCAATGAAGCAACTCTTTCCAGAATGAC
TTCATGAAAATTTGCCTGCAACAATTTCATCTCCAAGTGAAGGAAATTCA
TCTTGTAAGATGGTGAAAACAaagctttgatattttttggcgTGCCTGAA
TCCAAATGATCAATTGGTAACTTTCCTTCTCCGTCTGGTAATGAAAGAGG
ATATTGATCGATAGCCATCTTCTGGACAATTGGTAAAGGTGCTTTGAAAT
AAGCGGCATGATGGACGATGGTCCAGCGCCTACTTGGATAAACTCTTTGA
TCATTTTTTATGTCTTCATTCCAAATGTAGTGTTTTCTGTATTTCTTTAG
AC
Run BLAST on NCBI

protein sequence of TCONS_00009059-protein

>TCONS_00009059-protein ID=TCONS_00009059-protein|Name=TCONS_00009059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
LKKYRKHYIWNEDIKNDQRVYPSRRWTIVHHAAYFKAPLPIVQKMAIDQY
PLSLPDGEGKLPIDHLDSGTPKNIKALFSPSYKMNFLHLEMKLLQANFHE
VILERVASLVQKYNVILPILSVLLEDVSKDKEVYFNMPGMYGGFTYWLEF
DSSKTEILALYSRSSSRLVGNSEQLHKCTKEGWTLVKSDK
Run BLAST on NCBI

transcript from alignment at sc0000089:297725..298426

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009059 ID=TCONS_00009059|Name=TCONS_00009059|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at sc0000089:297725..298426 (Clytia hemisphaerica)
GTCTAAAGAAATACAGAAAACACTACATTTGGAATGAAGACATAAAAAAT
GATCAAAGAGTTTATCCAAGTAGGCGCTGGACCATCGTCCATCATGCCGC
TTATTTCAAAGCACCTTTACCAATTGTCCAGAAGATGGCTATCGATCAAT
ATCCTCTTTCATTACCAGACGGAGAAGGAAAGTTACCAATTGATCATTTG
GATTCAGGCAcgccaaaaaatatcaaagcttTGTTTTCACCATCTTACAA
GATGAATTTCCTTCACTTGGAGATGAAATTGTTGCAGGCAAATTTTCATG
AAGTCATTCTGGAAAGAGTTGCTTCATTGGTTCAGAAGTATAATGTGATT
TTACCAATCCTGTCAGTCCTTTTAGAAGACGTTTCAAAGGATAAAGAAGT
TTACTTCAATATGCCTGGAATGTATGGTGGATTCACATATTGGCTTGAGT
TTGATTCTTCTAAAACAGAAATTTTGGCATTGTATTCACGGAGTTCTTCA
AGGCTTGTTGGTAATTCAGAACAGTTACATAAGTGCACCAAAGAAGGATG
GACACTGGTCAAAAGTGACAAGTAATGGTTTCCTTAATCTTAAGATTTAT
TTTCTCTTTAGTTTTATAGCTTTGTTTTTAAGTTTAATTATACATCtgct
tcatttaaaaatttcttcattataACTTTCCCTGtgagaaatcttttaaa
ag

Coding sequence (CDS) from alignment at sc0000089:297725..298426

>TCONS_00009059 ID=TCONS_00009059|Name=TCONS_00009059|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000089:297725..298426 (Clytia hemisphaerica)
CTAAAGAAATACAGAAAACACTACATTTGGAATGAAGACATAAAAAATGA
TCAAAGAGTTTATCCAAGTAGGCGCTGGACCATCGTCCATCATGCCGCTT
ATTTCAAAGCACCTTTACCAATTGTCCAGAAGATGGCTATCGATCAATAT
CCTCTTTCATTACCAGACGGAGAAGGAAAGTTACCAATTGATCATTTGGA
TTCAGGCAcgccaaaaaatatcaaagcttTGTTTTCACCATCTTACAAGA
TGAATTTCCTTCACTTGGAGATGAAATTGTTGCAGGCAAATTTTCATGAA
GTCATTCTGGAAAGAGTTGCTTCATTGGTTCAGAAGTATAATGTGATTTT
ACCAATCCTGTCAGTCCTTTTAGAAGACGTTTCAAAGGATAAAGAAGTTT
ACTTCAATATGCCTGGAATGTATGGTGGATTCACATATTGGCTTGAGTTT
GATTCTTCTAAAACAGAAATTTTGGCATTGTATTCACGGAGTTCTTCAAG
GCTTGTTGGTAATTCAGAACAGTTACATAAGTGCACCAAAGAAGGATGGA
CACTGGTCAAAAGTGACAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005071XLOC_005071Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009059-proteinTCONS_00009059-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009059-exon-sc0000089-1491911889:297725..298426TCONS_00009059-exon-sc0000089-1491911889:297725..298426Clytia hemisphaericaexon
TCONS_00009059-exon-sc0000089-1510915933:297725..298426TCONS_00009059-exon-sc0000089-1510915933:297725..298426Clytia hemisphaericaexon
TCONS_00009059-exon-sc0000089-1575043694:297725..298426TCONS_00009059-exon-sc0000089-1575043694:297725..298426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:297725..298426 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25193	2.10012	0.187431	0.670223	2.0653	0.791006	0.97394	1.19537	0.488936	0.461749	0.88332	0.655889	4.31406	4.45278	1.01308	0.385919	0.0273848	1.09185	7.9285	6.2172	1.404	2.4018	2.40091	2.0886	3.16882	1.47312	0	0	0.982568	0.723983
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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