TCONS_00009058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009058
Unique NameTCONS_00009058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009058 ID=TCONS_00009058|Name=TCONS_00009058|organism=Clytia hemisphaerica|type=transcript|length=686bp
GCAGAGCAAAAGTGTCTTGACTGTTTCTGAGTCTTTATCTAGAAGAGATA
GAGATAGATCAGGTTCATTGACAGCTTAAATAACCAGAGTTggcattttg
ttgaaagtccaaAGACCTGCATTCTTCAAACGGAATTCCAAAATAAGCCT
TATTTAGGTGGTCACTATGCTAAAATGTCAATTCAAAaattaggtggggg
tatgtcaaaaattgtcaaaaaacttgtagtactcatatatgtcttggatt
ttagtaccgaccccccccccctgcatgAGAAGCATTTTCCTTTGGGAATA
CAAGGGAATCATACCTAGATTAATACGACTGAatcattttccttggaaaa
tacaaacaaGCGACATTCACAATTGAGAGCTAGCCTGTGATGCTATTTTC
TCAGGATTAATATTAGTCGGTGCAAATGCAAATGCATTAGAGAACTTTAT
GGTCTTTGGCTTTGAGAAAtggtgtttttggttgttttcattCCAAACCT
GGGGCTTTTTTCTGTGATattacaaaatttgtaaatgatATAAATGATAT
TATAGATATGGTAAATGTTGGAGATGTGTGAGAAACTCTGCACATTGCAG
AGAGGTGCATGAGAATTTTGACATGCAAGAGTCTCCTATTCAATGCCCAT
TTTTTAACATTCTGCAAAACTACTGAACCAAACAAC
Run BLAST on NCBI

transcript from alignment at sc0000089:294334..295019

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009058 ID=TCONS_00009058|Name=TCONS_00009058|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at sc0000089:294334..295019 (Clytia hemisphaerica)
GTTGTTTGGTTCAGTAGTTTTGCAGAATGTTAAAAAATGGGCATTGAATA
GGAGACTCTTGCATGTCAAAATTCTCATGCACCTCTCTGCAATGTGCAGA
GTTTCTCACACATCTCCAACATTTACCATATCTATAATATCATTTATatc
atttacaaattttgtaatATCACAGAAAAAAGCCCCAGGTTTGGaatgaa
aacaaccaaaaacaccaTTTCTCAAAGCCAAAGACCATAAAGTTCTCTAA
TGCATTTGCATTTGCACCGACTAATATTAATCCTGAGAAAATAGCATCAC
AGGCTAGCTCTCAATTGTGAATGTCGCttgtttgtattttccaaggaaaa
tgatTCAGTCGTATTAATCTAGGTATGATTCCCTTGTATTCCCAAAGGAA
AATGCTTCTcatgcagggggggggggtcggtactaaaatccaagacatat
atgagtactacaagttttttgacaatttttgacatacccccacctaattT
TTGAATTGACATTTTAGCATAGTGACCACCTAAATAAGGCTTATTTTGGA
ATTCCGTTTGAAGAATGCAGGTCTttggactttcaacaaaatgccAACTC
TGGTTATTTAAGCTGTCAATGAACCTGATCTATCTCTATCTCTTCTAGAT
AAAGACTCAGAAACAGTCAAGACACTTTTGCTCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005070XLOC_005070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009058-exon-sc0000089-1491911889:294334..295019TCONS_00009058-exon-sc0000089-1491911889:294334..295019Clytia hemisphaericaexon
TCONS_00009058-exon-sc0000089-1510915933:294334..295019TCONS_00009058-exon-sc0000089-1510915933:294334..295019Clytia hemisphaericaexon
TCONS_00009058-exon-sc0000089-1575043694:294334..295019TCONS_00009058-exon-sc0000089-1575043694:294334..295019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:294334..295019 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55007	0.99439	2.41978	2.60541	1.14297	1.14903	0.59279	0.813436	0.497468	0.773619	1.55762	0.693358	0.840107	1.15412	0.549037	0.60157	0.670013	0.801198	0.395321	0.579145	1.07352	0.736596	0	0.17021	0.795266	1.36138	1.59311	1.0153	0.600386	1.06511
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top