TCONS_00009054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009054
Unique NameTCONS_00009054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009054 ID=TCONS_00009054|Name=TCONS_00009054|organism=Clytia hemisphaerica|type=transcript|length=596bp
CTTTGACCTATAATATTACTCTGATAACAAAAATactgaaacataaaaaa
ataaagatatcatattttaaatatctttaatgTAGGTCTACCATTGTGGA
GGTGTGTACCAAGGACAGCTATatgacacatttttcaaaagataaaaaca
aaatgaaagaattgTAAACAATAAATAATTTCTTGTCTGGatcaaaatag
ataaaaatgatgaaaacttacaaattgattaaaaaaaacattagaaatta
CGGATCAAGACTTTAATTCTTGCTTTTCTTCCTCCAATCTTTGTATACCA
TCATCCAAATCTTTTTTAATATTcgctaatttttcttttttaaactcTAG
TTCTTTAAAATATTCCCCTAGCTGTTCTTCATTATCTAGAAATTCTTTTA
CTTCTTTGTAACACTTTGAGATATCTGTTTCTTGTTGAGGTTTCATTGAT
TCCCCAGTGAGCTggttgaaaagttctttattaaAAACAACATCATCTGG
TGAAGCCACATTCAGGTCTTCTTTAATTTGTTCTTTAGTTAAGCTCATTT
TAAGTCAATAAGAAACTAAAATATTGGATGACATTATAGTAATATC
Run BLAST on NCBI

transcript from alignment at sc0000089:144563..145158

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009054 ID=TCONS_00009054|Name=TCONS_00009054|organism=Clytia hemisphaerica|type=transcript|length=596bp|location=Sequence derived from alignment at sc0000089:144563..145158 (Clytia hemisphaerica)
GATATTACTATAATGTCATCCAATATTTTAGTTTCTTATTGACTTAAAAT
GAGCTTAACTAAAGAACAAATTAAAGAAGACCTGAATGTGGCTTCACCAG
ATGATGTTGTTTttaataaagaacttttcaaccAGCTCACTGGGGAATCA
ATGAAACCTCAACAAGAAACAGATATCTCAAAGTGTTACAAAGAAGTAAA
AGAATTTCTAGATAATGAAGAACAGCTAGGGGAATATTTTAAAGAACTAg
agtttaaaaaagaaaaattagcgAATATTAAAAAAGATTTGGATGATGGT
ATACAAAGATTGGAGGAAGAAAAGCAAGAATTAAAGTCTTGATCCGtaat
ttctaatgttttttttaatcaatttgtaagttttcatcatttttatctat
tttgatCCAGACAAGAAATTATTTATTGTTTAcaattctttcattttgtt
tttatcttttgaaaaatgtgtcatATAGCTGTCCTTGGTACACACCTCCA
CAATGGTAGACCTAcattaaagatatttaaaatatgatatctttattttt
ttatgtttcagtATTTTTGTTATCAGAGTAATATTATAGGTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005066XLOC_005066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009054-exon-sc0000089-1491911889:144563..145158TCONS_00009054-exon-sc0000089-1491911889:144563..145158Clytia hemisphaericaexon
TCONS_00009054-exon-sc0000089-1510915933:144563..145158TCONS_00009054-exon-sc0000089-1510915933:144563..145158Clytia hemisphaericaexon
TCONS_00009054-exon-sc0000089-1575043694:144563..145158TCONS_00009054-exon-sc0000089-1575043694:144563..145158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:144563..145158 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.3356	24.9416	8.40762	4.77284	19.5331	14.8492	14.9684	15.1166	11.4333	9.37749	6.78008	5.7391	6.34081	7.15485	7.54803	10.614	10.3917	9.94577	3.31334	2.85532	9.21808	8.04138	42.6752	34.1154	8.16936	16.8658	8.4221	7.24429	12.9223	15.8612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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