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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009053 ID=TCONS_00009053|Name=TCONS_00009053|organism=Clytia hemisphaerica|type=transcript|length=1898bp
tctTTCCTCATTtggttatatttttcaaattctttcctttcaaagaaaat
acaaatagCTTATAAACCCTAAACCTACCTCCAATTTTAAATGGAATTTT
CTTAATCTCCTATTACAGAGAGAATGACGCAATCTTATCANTTAAATGGA
ATTTTCTTAATCTCCTATTACAGATAGAATGACGCAATCTTATCAAGATG
TATGAATTTGTTctctttttatctctttttatttttgagcTGATTTGCAA
AGTATTTCATTCAATTTGACCTCAGAAAATAGTTCACATACTTTTAAACC
TAAACTTTCcaaaactctttttttctcCAGAGAAAAACTGCCAAGTCTTT
TAGCATAGCCCTACTGTAGCAAAGTCTGGAGAATATAAAATTCTTAAACA
TGGtctttacacattttttatctttaaattgAATTGttctgaaattctat
tgttgtCCTTATAAAGCCTCAAGAGTCAATAGAAAATGTAACTTCATGAa
gataattttggaaaataatcAAGCAAAAGATTCAGAGGAATTAGCTCAGA
CTTTTCATGATATAAACCAATGTAATGACTTTAAGAAATGATATATAACT
TTTTTAGAGGTGACTTGATGGCTCCTCTTTTGATAGTTATCCACCAGAAG
GTGTGGAAGGCAGCACTTTTGCTCCATTttcccttgatccttctctttaa
tTGCTAAGCATTAATTaaagaggcatcaagtactgTTTTAGAATCTTTGA
CCCAGGTCAGGGATGTTTTGtctctaattttcaaaataattaggTGATTT
ATGCTCATTTTTCAGAACATCCCCTTAATTATCATTTGAGcaatctaaaa
aaattaaaagggcTAGAAACCTAAAGCTATAACAGCTGAGGCACAGATTC
ACACCATAATATTGTTTGTAGCTGCTACATTATTATTACAGACCAGACAT
TTGCAAAATCTGACTGTCTagactcaaaactttaaaactgaCAAGTaatt
agatgaaaaaattattttgtgaaGTAGGCCTACTAGTTGCAAAGGTATTG
AAAACCATGTGTTCAAgaataaagtttcaaaaatctcttgccaacaaaac
aaacttgccaaaaaatgacaattttcgtttttttacttttcgGCCTTTTC
TGCTGACTGGACATTTTATCATGAAAGTCTGATGTATTGGCAGGGTCGCA
TATGGGTCCATTCTTACAGGGACTTTTCTAAGCACCTTGAGCTAGGgctt
ttttgtaaatttagattgaattttgaatttatatATATAATGTTGAGATG
TTGAGAAAGGCCTTTTGGCCGAAATATTCATGCAAAAAAGACGTGTTGTT
TTTGATCAGTTAATAATTAGCTAGttatttttgcttgtaaaaaacaaaaa
agtttaatttgctAGAAATGGTTTTCCTAttttgggtaacttgcatcagt
ggagagaaacttgcatagccatcaaatgccaaagcaaccaaagcagcaaa
gttttaaaagaaatgTAAAAGTGCAAGAACTATGCAGCTTTGCTCAAGCC
AGCAAAATTTGGAGTTTTTGAGGTGATAAGGGCGccatttttggtttttc
aattGCCAATTTTTCAATAGGGGAGTCTGAAAAATCTTTCTTGGCGCTCC
TTCTCAAATGGGCTCTGCTGGTGGGGCCTGGCCCACCTGCCCTGCCACCA
TGCCACTGCATTGCAAGGTTGCATACGATATCATCCACctggatgcaagt
gaaatttttcattctGCAGATCTAGACGGGGGTTAGGTTATTATTAGTTC
TCAAGGGTATTAGTATCCTGAGACTTAACTTTGGATTCcatagggatcct
tgtaggggcaccagTAGGGTTGGGGGCTTTCTTAactaaggtctgtaa Run BLAST on NCBI transcript from alignment at sc0000089:142479..144376 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009053 ID=TCONS_00009053|Name=TCONS_00009053|organism=Clytia hemisphaerica|type=transcript|length=1898bp|location=Sequence derived from alignment at sc0000089:142479..144376 (Clytia hemisphaerica)
ttacagaccttagtTAAGAAAGCCCCCAACCCTActggtgcccctacaag
gatccctatgGAATCCAAAGTTAAGTCTCAGGATACTAATACCCTTGAGA
ACTAATAATAACCTAACCCCCGTCTAGATCTGCagaatgaaaaatttcac
ttgcatccagGTGGATGATATCGTATGCAACCTTGCAATGCAGTGGCATG
GTGGCAGGGCAGGTGGGCCAGGCCCCACCAGCAGAGCCCATTTGAGAAGG
AGCGCCAAGAAAGATTTTTCAGACTCCCCTATTGAAAAATTGGCaattga
aaaaccaaaaatggCGCCCTTATCACCTCAAAAACTCCAAATTTTGCTGG
CTTGAGCAAAGCTGCATAGTTCTTGCACTTTTAcatttcttttaaaactt
tgctgctttggttgctttggcatttgatggctatgcaagtttctctccac
tgatgcaagttacccaaaaTAGGAAAACCATTTCTagcaaattaaacttt
tttgttttttacaagcaaaaataaCTAGCTAATTATTAACTGATCAAAAA
CAACACGTCTTTTTTGCATGAATATTTCGGCCAAAAGGCCTTTCTCAACA
TCTCAACATTATATatataaattcaaaattcaatctaaatttacaaaaaa
gcCCTAGCTCAAGGTGCTTAGAAAAGTCCCTGTAAGAATGGACCCATATG
CGACCCTGCCAATACATCAGACTTTCATGATAAAATGTCCAGTCAGCAGA
AAAGGCcgaaaagtaaaaaaacgaaaattgtcattttttggcaagtttgt
tttgttggcaagagatttttgaaactttattcTTGAACACATGGTTTTCA
ATACCTTTGCAACTAGTAGGCCTACttcacaaaataattttttcatctaa
ttACTTGtcagttttaaagttttgagtctAGACAGTCAGATTTTGCAAAT
GTCTGGTCTGTAATAATAATGTAGCAGCTACAAACAATATTATGGTGTGA
ATCTGTGCCTCAGCTGTTATAGCTTTAGGTTTCTAgcccttttaattttt
ttagattgCTCAAATGATAATTAAGGGGATGTTCTGAAAAATGAGCATAA
ATCAcctaattattttgaaaattagagaCAAAACATCCCTGACCTGGGTC
AAAGATTCTAAAAcagtacttgatgcctctttAATTAATGCTTAGCAatt
aaagagaaggatcaagggaaAATGGAGCAAAAGTGCTGCCTTCCACACCT
TCTGGTGGATAACTATCAAAAGAGGAGCCATCAAGTCACCTCTAAAAAAG
TTATATATCATTTCTTAAAGTCATTACATTGGTTTATATCATGAAAAGTC
TGAGCTAATTCCTCTGAATCTTTTGCTTgattattttccaaaattatctT
CATGAAGTTACATTTTCTATTGACTCTTGAGGCTTTATAAGGacaacaat
agaatttcagaaCAATTcaatttaaagataaaaaatgtgtaaagaCCATG
TTTAAGAATTTTATATTCTCCAGACTTTGCTACAGTAGGGCTATGCTAAA
AGACTTGGCAGTTTTTCTCTGgagaaaaaaagagttttgGAAAGTTTAGG
TTTAAAAGTATGTGAACTATTTTCTGAGGTCAAATTGAATGAAATACTTT
GCAAATCAgctcaaaaataaaaagagataaaaagagAACAAATTCATACA
TCTTGATAAGATTGCGTCATTCTATCTGTAATAGGAGATTAAGAAAATTC
CATTTAANTGATAAGATTGCGTCATTCTCTCTGTAATAGGAGATTAAGAA
AATTCCATTTAAAATTGGAGGTAGGTTTAGGGTTTATAAGctatttgtat
tttctttgaaaggaaagaatttgaaaaatataaccaAATGAGGAAaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009053-exon-sc0000089-1491911889:142479..144376 | TCONS_00009053-exon-sc0000089-1491911889:142479..144376 | Clytia hemisphaerica | exon |
| TCONS_00009053-exon-sc0000089-1510915933:142479..144376 | TCONS_00009053-exon-sc0000089-1510915933:142479..144376 | Clytia hemisphaerica | exon |
| TCONS_00009053-exon-sc0000089-1575043694:142479..144376 | TCONS_00009053-exon-sc0000089-1575043694:142479..144376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:142479..144376 . |
Blast
The following BLAST results are available for this feature:
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