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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009051 ID=TCONS_00009051|Name=TCONS_00009051|organism=Clytia hemisphaerica|type=transcript|length=754bp
ATTGGTGATGAGTTTTTGCTCTGAATCCAACGAAACTTCTTCCAATTCTT
CTGCtgaaaagctttttaaagcttCTTTTAAGTCAAATTCTCTCGATAAA
TCACTGACAAAAAACAACGATAAAAAGAAGGCAATCATGTAAAGAAAGCA
GGTCACTAAACTAGCTCCGTTTGAGTATTCTACATGCacacccaaaaacc
aaaaatctgCTCTAACAAAAGCTGAATTTATACATGGTCCAAGAGTAAAT
CCCACAACATATGTACAAGACACAGCGGATATTTGTGAGACGACTTCGTC
CGGTGCGAAAGAGCGGGCAACTTCAGCCACAATGATTGCTCGAAGACAAT
CCCCTAAACCGGACAGTAATCTTCCAAATAATAACAAATAAGGCGAAATC
GGTATCGTATACAGGACATTGCCAATTGTCACCAGCGCTAAGATGAAACT
GAATATGAGACGCGTTCGCCGAGTTCTgtcaaatatctttccaacgaaaa
CTGATGATATAATCATAGACAGGATGTATATTCCAGAAATGCAACTATAA
AAGATATTCAACGAATTATTTTTGACTTGAAGGAAATCTTTTAAGTAAAC
AAGCAAAGTTGCAAATGTAAATGAGAACTCAATTCCAAGGATAAGAGCAA
TAAAGTAGAATATTTTGGTAGTTATTTGACGTTTTCCGAGCCATTGCTTG
TAGCTGAAAGCAACTCCTGTCTGCGCCATCATTGACTTAAGATCTACACT
TAAA Run BLAST on NCBI protein sequence of TCONS_00009051-protein >TCONS_00009051-protein ID=TCONS_00009051-protein|Name=TCONS_00009051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
LSVDLKSMMAQTGVAFSYKQWLGKRQITTKIFYFIALILGIEFSFTFATL
LVYLKDFLQVKNNSLNIFYSCISGIYILSMIISSVFVGKIFDRTRRTRLI
FSFILALVTIGNVLYTIPISPYLLLFGRLLSGLGDCLRAIIVAEVARSFA
PDEVVSQISAVSCTYVVGFTLGPCINSAFVRADFWFLGVHVEYSNGASLV
TCFLYMIAFFLSLFFVSDLSREFDLKEALKSFSAEELEEVSLDSEQKLIT
N Run BLAST on NCBI transcript from alignment at sc0000089:130850..131603 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009051 ID=TCONS_00009051|Name=TCONS_00009051|organism=Clytia hemisphaerica|type=transcript|length=754bp|location=Sequence derived from alignment at sc0000089:130850..131603 (Clytia hemisphaerica)
TTTAAGTGTAGATCTTAAGTCAATGATGGCGCAGACAGGAGTTGCTTTCA
GCTACAAGCAATGGCTCGGAAAACGTCAAATAACTACCAAAATATTCTAC
TTTATTGCTCTTATCCTTGGAATTGAGTTCTCATTTACATTTGCAACTTT
GCTTGTTTACTTAAAAGATTTCCTTCAAGTCAAAAATAATTCGTTGAATA
TCTTTTATAGTTGCATTTCTGGAATATACATCCTGTCTATGATTATATCA
TCAGttttcgttggaaagatatttgacAGAACTCGGCGAACGCGTCTCAT
ATTCAGTTTCATCTTAGCGCTGGTGACAATTGGCAATGTCCTGTATACGA
TACCGATTTCGCCTTATTTGTTATTATTTGGAAGATTACTGTCCGGTTTA
GGGGATTGTCTTCGAGCAATCATTGTGGCTGAAGTTGCCCGCTCTTTCGC
ACCGGACGAAGTCGTCTCACAAATATCCGCTGTGTCTTGTACATATGTTG
TGGGATTTACTCTTGGACCATGTATAAATTCAGCTTTTGTTAGAGcagat
ttttggtttttgggtgtGCATGTAGAATACTCAAACGGAGCTAGTTTAGT
GACCTGCTTTCTTTACATGATTGCCTTCTTTTTATCGTTGTTTTTTGTCA
GTGATTTATCGAGAGAATTTGACTTAAAAGaagctttaaaaagcttttca
GCAGAAGAATTGGAAGAAGTTTCGTTGGATTCAGAGCAAAAACTCATCAC
CAAT Coding sequence (CDS) from alignment at sc0000089:130850..131603 >TCONS_00009051 ID=TCONS_00009051|Name=TCONS_00009051|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at sc0000089:130850..131603 (Clytia hemisphaerica)
TTAAGTGTAGATCTTAAGTCAATGATGGCGCAGACAGGAGTTGCTTTCAG
CTACAAGCAATGGCTCGGAAAACGTCAAATAACTACCAAAATATTCTACT
TTATTGCTCTTATCCTTGGAATTGAGTTCTCATTTACATTTGCAACTTTG
CTTGTTTACTTAAAAGATTTCCTTCAAGTCAAAAATAATTCGTTGAATAT
CTTTTATAGTTGCATTTCTGGAATATACATCCTGTCTATGATTATATCAT
CAGttttcgttggaaagatatttgacAGAACTCGGCGAACGCGTCTCATA
TTCAGTTTCATCTTAGCGCTGGTGACAATTGGCAATGTCCTGTATACGAT
ACCGATTTCGCCTTATTTGTTATTATTTGGAAGATTACTGTCCGGTTTAG
GGGATTGTCTTCGAGCAATCATTGTGGCTGAAGTTGCCCGCTCTTTCGCA
CCGGACGAAGTCGTCTCACAAATATCCGCTGTGTCTTGTACATATGTTGT
GGGATTTACTCTTGGACCATGTATAAATTCAGCTTTTGTTAGAGcagatt
tttggtttttgggtgtGCATGTAGAATACTCAAACGGAGCTAGTTTAGTG
ACCTGCTTTCTTTACATGATTGCCTTCTTTTTATCGTTGTTTTTTGTCAG
TGATTTATCGAGAGAATTTGACTTAAAAGaagctttaaaaagcttttcaG
CAGAAGAATTGGAAGAAGTTTCGTTGGATTCAGAGCAAAAACTCATCACC
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009051-exon-sc0000089-1491911889:130850..131603 | TCONS_00009051-exon-sc0000089-1491911889:130850..131603 | Clytia hemisphaerica | exon |
| TCONS_00009051-exon-sc0000089-1510915933:130850..131603 | TCONS_00009051-exon-sc0000089-1510915933:130850..131603 | Clytia hemisphaerica | exon |
| TCONS_00009051-exon-sc0000089-1575043694:130850..131603 | TCONS_00009051-exon-sc0000089-1575043694:130850..131603 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:130850..131603 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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