TCONS_00009049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009049
Unique NameTCONS_00009049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009049 ID=TCONS_00009049|Name=TCONS_00009049|organism=Clytia hemisphaerica|type=transcript|length=326bp
TTTGGTAGTAAGCTGGCGTCTTGGTTGGTTTTTCTAAATTCGTCTTGGAT
ATCTTTTTCGACTTCTTCCAATTGATGAGTTGGGAAGGTAGCTGTTAGTC
GTTCCAAGCAGACGCCAGTGAATAATGCAACGGTTTGGTTGTCGAACGTT
GGGATGGACACGGTATACATACCATGAGGAGATTCAGTAGTGCTGTCACC
GATTCCACCAAGTTGAATTGGACCAGCGTATTCTTGTGTACAGTTGCTTG
GGGGTAGTCGTTGGATGGCGTTGAATTTTGAGACGAAGTCACTACATCCT
GAATCGTAGAAGAGCAGGAATTGTTG
Run BLAST on NCBI

protein sequence of TCONS_00009049-protein

>TCONS_00009049-protein ID=TCONS_00009049-protein|Name=TCONS_00009049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
QQFLLFYDSGCSDFVSKFNAIQRLPPSNCTQEYAGPIQLGGIGDSTTESP
HGMYTVSIPTFDNQTVALFTGVCLERLTATFPTHQLEEVEKDIQDEFRKT
NQDASLLP
Run BLAST on NCBI

transcript from alignment at sc0000089:110312..110637

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009049 ID=TCONS_00009049|Name=TCONS_00009049|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at sc0000089:110312..110637 (Clytia hemisphaerica)
CAACAATTCCTGCTCTTCTACGATTCAGGATGTAGTGACTTCGTCTCAAA
ATTCAACGCCATCCAACGACTACCCCCAAGCAACTGTACACAAGAATACG
CTGGTCCAATTCAACTTGGTGGAATCGGTGACAGCACTACTGAATCTCCT
CATGGTATGTATACCGTGTCCATCCCAACGTTCGACAACCAAACCGTTGC
ATTATTCACTGGCGTCTGCTTGGAACGACTAACAGCTACCTTCCCAACTC
ATCAATTGGAAGAAGTCGAAAAAGATATCCAAGACGAATTTAGAAAAACC
AACCAAGACGCCAGCTTACTACCAAA

Coding sequence (CDS) from alignment at sc0000089:110312..110637

>TCONS_00009049 ID=TCONS_00009049|Name=TCONS_00009049|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000089:110312..110637 (Clytia hemisphaerica)
CAACAATTCCTGCTCTTCTACGATTCAGGATGTAGTGACTTCGTCTCAAA
ATTCAACGCCATCCAACGACTACCCCCAAGCAACTGTACACAAGAATACG
CTGGTCCAATTCAACTTGGTGGAATCGGTGACAGCACTACTGAATCTCCT
CATGGTATGTATACCGTGTCCATCCCAACGTTCGACAACCAAACCGTTGC
ATTATTCACTGGCGTCTGCTTGGAACGACTAACAGCTACCTTCCCAACTC
ATCAATTGGAAGAAGTCGAAAAAGATATCCAAGACGAATTTAGAAAAACC
AACCAAGACGCCAGCTTACTACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005061XLOC_005061Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009049-exon-sc0000089-1491911889:110312..110637TCONS_00009049-exon-sc0000089-1491911889:110312..110637Clytia hemisphaericaexon
TCONS_00009049-exon-sc0000089-1510915933:110312..110637TCONS_00009049-exon-sc0000089-1510915933:110312..110637Clytia hemisphaericaexon
TCONS_00009049-exon-sc0000089-1575043694:110312..110637TCONS_00009049-exon-sc0000089-1575043694:110312..110637Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009049-proteinTCONS_00009049-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:110312..110637 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43355	3.28407	1.26463	1.00763	2.28708	0.0902352	1.29481	3.04395	0.255511	0	0.614389	0.403875	1.53445	1.04711	0.516522	0	0	0.466607	0.75681	2.93077	0	0.857967	0.148248	0.908766	0	4.29968	0	0	1.00963	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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