TCONS_00009037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009037
Unique NameTCONS_00009037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009037 ID=TCONS_00009037|Name=TCONS_00009037|organism=Clytia hemisphaerica|type=transcript|length=1338bp
GCcaggaataaacaaaataaattcttccaggtttcATGCCATATCCAAAA
GATATTCGTTGCCATCCCAAAGCATACAAAAAGTACAAGTTCGTCTTCAA
TCATCGACGTTGCATTGCAGCACTTATGGTTCTAGCTAGGATAGGATCTA
ATCTGATTTGATAATCTTCATTCTCAATGTTTACAGTTAATCTCTGGGAT
TCTTCAATCCTGTTATGGAAATAACCCAACAACTCTGCTGCTGTTGatgc
aaaaaaaagatttccatCTTCTATTCTCCTCCATCCACTGATACTGTTTC
TTTTTCGTTCggtttcaacttttcaaaacaaatgattttggttctctctc
aaaaaaaattcaaaNggtttcaacttttcaaaacaaatgattttggttct
ctctcaaaaaaatttcaaaattcgaatcacaaaattcgaattacaaaatt
cGAAAGATCGAAAATCTATTTGAACTTTACCGATCGAAGCAATGCAGCGA
CttcttaaaaaacgaaaaaaagcaCACGCGATGGAGTGCAGCTTGTCCAA
AGTCACGGTAAAATGAGCTGCGCCGAAGAGAAAATCTTGGACGGACTTTC
CCGTCCAAGAACATTCGATTCCACGGCAAAAAGTAACAgacgttaaatcg
cgataaaaaagcgNNNNNNNNNNNNNAAATCTTGGACGGACTTTCCCGTC
CAAGAACATTCGATTCCACGGCAAAAAGTAACAgacgttaaatcgcgata
aaaaagcggttttcgtctaacaggctaggaACAATCTAACTctgacaatt
ttatttttagagcCCTTACATCTGCACACAAATTAAGGAGAATAAACAAG
TCTATTTCATATTCTTCAATCCGGGATCAATTTAAAACGATATTGAGTTT
ACTTGGCTACAACAAAGCACTTTTTGGTTTACATAGTCTAAGGTCGGGAG
GAGTCACGGCGGCAGCTAACCTTGGTATCAAAGACAGGTTGTTGATGAAG
CATGGTCGCTGGAAGTcggcaaatattaagaataattATATATCCGAGAA
CTTAGGTAATTTATTGTTTGTTTCGAAAAATTTAGGGTTATAAAGTATTA
ATAATGTACGTTTTCAACATTACCCTCTACCAGTTTTGAAGCGAAATTTA
TAAGTTTGTCTCATGCTCTTAGTCCACAGGCTTTGGTACGGCTCCTACTA
CCAGAATACAAAAAGCTGTCTCGAAATCGAGATTTTTGGTGTTCAGTTAT
TCTTTTTCCCGTTTTCGGTCTTTTGTGTTTTCCATTTGTGATCTGTGACT
TTTCGGAGAATTAGGAAataaatcaatttattttcGGT
Run BLAST on NCBI

transcript from alignment at sc0000089:468266..469603-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009037 ID=TCONS_00009037|Name=TCONS_00009037|organism=Clytia hemisphaerica|type=transcript|length=1338bp|location=Sequence derived from alignment at sc0000089:468266..469603- (Clytia hemisphaerica)
GCCAGGAATAAACAAAATAAATTCTTCCAGGTTTCATGCCATATCCAAAA
GATATTCGTTGCCATCCCAAAGCATACAAAAAGTACAAGTTCGTCTTCAA
TCATCGACGTTGCATTGCAGCACTTATGGTTCTAGCTAGGATAGGATCTA
ATCTGATTTGATAATCTTCATTCTCAATGTTTACAGTTAATCTCTGGGAT
TCTTCAATCCTGTTATGGAAATAACCCAACAACTCTGCTGCTGTTGATGC
AAAAAAAAGATTTCCATCTTCTATTCTCCTCCATCCACTGATACTGTTTC
TTTTTCGTTCGGTTTCAACTTTTCAAAACAAATGATTTTGGTTCTCTCTC
AAAAAAAATTCAAANGGTTTCAACTTTTCAAAACAAATGATTTTGGTTCT
CTCTCAAAAAAATTTCAAAATTCGAATCACAAAATTCGAATTACAAAATT
CGAAAGATCGAAAATCTATTTGAACTTTACCGATCGAAGCAATGCAGCGA
CTTCTTAAAAAACGAAAAAAAGCACACGCGATGGAGTGCAGCTTGTCCAA
AGTCACGGTAAAATGAGCTGCGCCGAAGAGAAAATCTTGGACGGACTTTC
CCGTCCAAGAACATTCGATTCCACGGCAAAAAGTAACAGACGTTAAATCG
CGATAAAAAAGCGNNNNNNNNNNNNNAAATCTTGGACGGACTTTCCCGTC
CAAGAACATTCGATTCCACGGCAAAAAGTAACAGACGTTAAATCGCGATA
AAAAAGCGGTTTTCGTCTAACAGGCTAGGAACAATCTAACTCTGACAATT
TTATTTTTAGAGCCCTTACATCTGCACACAAATTAAGGAGAATAAACAAG
TCTATTTCATATTCTTCAATCCGGGATCAATTTAAAACGATATTGAGTTT
ACTTGGCTACAACAAAGCACTTTTTGGTTTACATAGTCTAAGGTCGGGAG
GAGTCACGGCGGCAGCTAACCTTGGTATCAAAGACAGGTTGTTGATGAAG
CATGGTCGCTGGAAGTCGGCAAATATTAAGAATAATTATATATCCGAGAA
CTTAGGTAATTTATTGTTTGTTTCGAAAAATTTAGGGTTATAAAGTATTA
ATAATGTACGTTTTCAACATTACCCTCTACCAGTTTTGAAGCGAAATTTA
TAAGTTTGTCTCATGCTCTTAGTCCACAGGCTTTGGTACGGCTCCTACTA
CCAGAATACAAAAAGCTGTCTCGAAATCGAGATTTTTGGTGTTCAGTTAT
TCTTTTTCCCGTTTTCGGTCTTTTGTGTTTTCCATTTGTGATCTGTGACT
TTTCGGAGAATTAGGAAATAAATCAATTTATTTTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005053XLOC_005053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009037-exon-sc0000089-1575043694:468266..469603TCONS_00009037-exon-sc0000089-1575043694:468266..469603Clytia hemisphaericaexon
TCONS_00009037-exon-sc0000089-1510915933:468266..469603TCONS_00009037-exon-sc0000089-1510915933:468266..469603Clytia hemisphaericaexon
TCONS_00009037-exon-sc0000089-1491911889:468266..469603TCONS_00009037-exon-sc0000089-1491911889:468266..469603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:468266..469603 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.73063	1.56054	1.19613	0.959227	1.0286	0.784357	0.456357	1.51679	0.737194	0.564899	0.440631	0.902472	0.713335	0.609688	0.684388	0.943567	0.989261	0.649874	1.07162	0.931754	1.03475	1.16733	1.11145	1.12972	2.09875	2.15505	0.762113	1.2409	1.24589	0.656287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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