TCONS_00009028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009028
Unique NameTCONS_00009028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009028 ID=TCONS_00009028|Name=TCONS_00009028|organism=Clytia hemisphaerica|type=transcript|length=364bp
caatagTAAAAAACATTTCACTTCCTCCTGCTGGCCAGGATGACCCAGCA
CCGCcatttgaaaatgtcaaacttGATCAACATAAAGAAAGATGGTAAAG
GACCTGTTCTTTTTACTGGTCCAGATGGTATTTGCGATCATAACACACAA
GTTCTGGGTCCAACAGAGTTTGTTGGCATTGGAACAATGTCACCAGAAGG
TACCAGTAACCTAGCATATTTGTGGAGACCAGCTACGTGCACCAATAGAA
GAAGAACAACTTATGGAAAAGCGAATTGGGATCAAACAGGCTGGCATCTC
CAAATCAAAAAGGACGAGAAACGCGCCAATAGTGCCCCCATTCAACGAAA
CTATAAAATCCAGG
Run BLAST on NCBI

protein sequence of TCONS_00009028-protein

>TCONS_00009028-protein ID=TCONS_00009028-protein|Name=TCONS_00009028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MTQHRHLKMSNLINIKKDGKGPVLFTGPDGICDHNTQVLGPTEFVGIGTM
SPEGTSNLAYLWRPATCTNRRRTTYGKANWDQTGWHLQIKKDEKRANSAP
IQRNYKIQ
Run BLAST on NCBI

transcript from alignment at sc0000089:258404..259073-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009028 ID=TCONS_00009028|Name=TCONS_00009028|organism=Clytia hemisphaerica|type=transcript|length=670bp|location=Sequence derived from alignment at sc0000089:258404..259073- (Clytia hemisphaerica)
CAATAGTAAAAAACATTTCACTTCCTCCTGCTGGCCAGGATGACCCAGCA
CCGCCATTTGAAAATGTCAAACTTGATCAACATAAAGAAAGATGGTAAAG
GACCTGTTCTTTTTACTGGTGAGTAAGTCTATCTTCTCCGTCTTCTCCAC
TTCTTCTTAACCTCTCATGCTCATGAGAGTAACAAACCGAAATCTAATTG
ATTTCTTTGTATATCTCTACTATAGGTCCAGATGGTATTTGCGATCATAA
CACACAAGTTCTGGGTCCAACAGAGTTTGTTGGCATTGGAACAATGTCAC
CAGAAGGTACCAGTAACCTAGCATATTTGTGGAGACCAGCTACGGTAAAA
AGAGTTTTTTCTTTGATTTATGATGGAATGGTAGATTTATGAGTACACAG
CATGGTTCCGCCGCCTAGTCCTCACTCATTGGGGATAATACCACGCAGAT
AACGCCTTAGGATTTTGCAATGAATGTGAGAGAGAAAAATACTAGTATAA
CTAGCAACGAAAGTGTGCTAAAAGAATCGTTTTTCTTTCTTAGTGCACCA
ATAGAAGAAGAACAACTTATGGAAAAGCGAATTGGGATCAAACAGGCTGG
CATCTCCAAATCAAAAAGGACGAGAAACGCGCCAATAGTGCCCCCATTCA
ACGAAACTATAAAATCCAGG

Coding sequence (CDS) from alignment at sc0000089:258404..259073-

>TCONS_00009028 ID=TCONS_00009028|Name=TCONS_00009028|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000089:258404..259073- (Clytia hemisphaerica)
TGCACCAATAGAAGAAGAACAACTTATGGAAAAGCGAATTGGGATCAAAC
AGGCTGGCATCTCCAAATCAAAAAGGACGAGAAACGCGCCAATAGTGCCC
CCATTCAACGAAACTATAAAATCCAGGTCCAGATGGTATTTGCGATCATA
ACACACAAGTTCTGGGTCCAACAGAGTTTGTTGGCATTGGAACAATGTCA
CCAGAAGGTACCAGTAACCTAGCATATTTGTGGAGACCAGCTACGATGAC
CCAGCACCGCCATTTGAAAATGTCAAACTTGATCAACATAAAGAAAGATG
GTAAAGGACCTGTTCTTTTTACTGTGCACCAATAGAAGAAGAACAACTTA
TGGAAAAGCGAATTGGGATCAAACAGGCTGGCATCTCCAAATCAAAAAGG
ACGAGAAACGCGCCAATAGTGCCCCCATTCAACGAAACTATAAAATCCAG
GTCCAGATGGTATTTGCGATCATAACACACAAGTTCTGGGTCCAACAGAG
TTTGTTGGCATTGGAACAATGTCACCAGAAGGTACCAGTAACCTAGCATA
TTTGTGGAGACCAGCTACGATGACCCAGCACCGCCATTTGAAAATGTCAA
ACTTGATCAACATAAAGAAAGATGGTAAAGGACCTGTTCTTTTTACTGTG
CACCAATAGAAGAAGAACAACTTATGGAAAAGCGAATTGGGATCAAACAG
GCTGGCATCTCCAAATCAAAAAGGACGAGAAACGCGCCAATAGTGCCCCC
ATTCAACGAAACTATAAAATCCAGGTCCAGATGGTATTTGCGATCATAAC
ACACAAGTTCTGGGTCCAACAGAGTTTGTTGGCATTGGAACAATGTCACC
AGAAGGTACCAGTAACCTAGCATATTTGTGGAGACCAGCTACGATGACCC
AGCACCGCCATTTGAAAATGTCAAACTTGATCAACATAAAGAAAGATGGT
AAAGGACCTGTTCTTTTTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005047XLOC_005047Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009028-proteinTCONS_00009028-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009028-exon-sc0000089-1575043694:258956..259073TCONS_00009028-exon-sc0000089-1575043694:258956..259073Clytia hemisphaericaexon
TCONS_00009028-exon-sc0000089-1575043694:258730..258848TCONS_00009028-exon-sc0000089-1575043694:258730..258848Clytia hemisphaericaexon
TCONS_00009028-exon-sc0000089-1575043694:258404..258530TCONS_00009028-exon-sc0000089-1575043694:258404..258530Clytia hemisphaericaexon
TCONS_00009028-exon-sc0000089-1510915933:258956..259073TCONS_00009028-exon-sc0000089-1510915933:258956..259073Clytia hemisphaericaexon
TCONS_00009028-exon-sc0000089-1510915933:258730..258848TCONS_00009028-exon-sc0000089-1510915933:258730..258848Clytia hemisphaericaexon
TCONS_00009028-exon-sc0000089-1510915933:258404..258530TCONS_00009028-exon-sc0000089-1510915933:258404..258530Clytia hemisphaericaexon
TCONS_00009028-exon-sc0000089-1491911889:258956..259073TCONS_00009028-exon-sc0000089-1491911889:258956..259073Clytia hemisphaericaexon
TCONS_00009028-exon-sc0000089-1491911889:258730..258848TCONS_00009028-exon-sc0000089-1491911889:258730..258848Clytia hemisphaericaexon
TCONS_00009028-exon-sc0000089-1491911889:258404..258530TCONS_00009028-exon-sc0000089-1491911889:258404..258530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:258404..259073 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457777	0.223202	0.259159	0.253547	0.308669	0.975658	0	0	0.19288	0	0.46379	0.304877	0	0.158089	0.389912	0	5.84208	5.10736	0	0.50922	1.54912	1.61915	2.09951	1.43157	25.0663	19.5198	0.313852	0.334951	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027814DUF4562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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