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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009024 ID=TCONS_00009024|Name=TCONS_00009024|organism=Clytia hemisphaerica|type=transcript|length=2411bp
TGCACGTAGAAATTAGTTCAGAGcgtttattcaaaaaataaaaaacaata
tacTTCTGTCAACTTCGaagacaaaaaatataattccagtatctagtagg
gggaaatttgttaaatcgctcgatttttttagtcaaagcacttatacatt
tttggagagctaaggggtaggggaatcaaaataacttgggtgccaatttt
gtttcggacattttggtgtgattttcggacaaatacgacggtctcgggca
aaaatcatagggtgaaaaattaatgaaaatttcagcttgagaaaacggag
acctgttgtatatttttggaaagctctcaaaaaattaagattagtgatat
attgcgagtataggtgatttctttacctaactcgagatattaatccttaa
aaacagtgtttttcagccagaaacagctgttttgtccagtttttgcgctt
tcggaagctcaatatctcgagttaggtactgaaatcacctatactagcaa
tatatcactaatcttaattttttgagagctttccaaaaatataggAAAGT
ATAAGAAAAACTAAACAGTCATGCCCATGGTTGTTGAAATTGGATGCCTC
CATCTGCCAAATACTGATCCATACATAAATGGTGTCCTTCTTTTGTACAT
GCTTCAAATTTCGGCTTAGTGTGGTATAACAACCAACTCGACTTCAACCC
CTGTTGTCGCCAATGTTGAACATGTTTTAAAACACCAAGGCCATACCGGC
TACGTGCATATAGCCCTGGATTCGGTCTATTAGGTTGCCAGTGCCCTCCG
ATATAGAGTTTAGTATTGACTCCACCCTTGATTCGACTAGTCggaaatga
ccttttcaaaaccttttgtattgttttaaaaatgccTCGTGGATTCTTAT
AAATGTCTGATGGAAAGACGTAAAACCCCCAAACCTCAATGTTCCATTTA
CCTTTATCTATTCCAATGTATCCACAAGAGAATCTGGTAGTATCATTTAT
AGTTCTCGGGCATGCTTCATATTGGCCTTTAGAGAATGACATTCCGAGCT
TTTTCCACTCCGATTCCTGTTTTACTAGCGACGTGAAATTTTGACTTCGG
AAGAGGAAATCTTCGTCTATATCCCATGGTAGTGAATCTTGAAGTTTTAA
TGCTCCTAGGCCTGATCCAGCATAGATGCTGTATTGATAACCTAGCTTGT
CAAAGAGTTTAGAAGTATTAATCATCATTTTATGTAGATCTCTCATGCAA
GCTCTTTGCTCAAACATAGTTCTAGTTTTCGCCATATGTTTTTCGCATTT
TACCTTAGATTCAATGTCAGTAAATTCGATTCGTTTGTTATAAGTCCCTC
TATAAAATTcagaaatgtcattttttattgcaaaatcAAGCCAGTTATTG
CGGGTTAGATTTATAAAATCACGCCATTTCTCCATATAGAATAAGCTAGA
CAGATGCGACTTCATAATTTTCAATTGCTTAGCCATGGTGTATATGATAT
CTGGATAAACTAACTCATCTGGACAATCTTTTCTAGCTTCCAAATAACCC
AAAAGAACGTCTCTGTCCATCGCAAATGGTCCATCAAAATAATCACATAG
AACTTTTTGTTGTTGATACATAACGTCGAAACCGAATTCAACTTTGTATT
GACTCCAAATTAATTTAGATTGGTAACATCCAGAACTCCAGTGGCCGTCT
GGATATAACGCCGATCCGGAAATAACATCACTGGATCCTTTCATTAAAGG
ATCTACAAAGTCCTTGATGTTAAACTCGTGGTGAATTTTCGTTAATCGTC
GGGTTAACATAACATATTTTGTAGAACTTTTTGAAGcaagaaacaataaa
ttttttgCTAATGTATTGTCTTTTCGATTGAAGATCCTGTTAAAAGTAGA
TTTGATAAAAGAAACTATTATGGAATCAGTTTTTACAAGAACCCATTCCA
AATTCGGCATTGCACTTTGAATTTTGGTCAATCTTTTTGAATGTTTGTTG
TAACTGGTTTCGTTCAAACCAATAAGAATATTGGCAGATTTACTCCAAGA
AGGTAGTGTTTCAATGTCGTTTAATAAAGTTTCGATACTTGAAATCTCAT
TGGCAGCGTTCAATATGATTGTGAGTTTATTGCCCaagttatgttttttt
gtaaggAGACCACCATTGATCCGACTCAATCGTGTGACCAGTTTTTCCTC
GAGTATTTCAATGAGGTCACTAAACTCTGGGTTTCTCTCGAATCGTTTAG
CGCGTGACATCTGCTTGAGAAACAAATCTAAATATCTGGTGCCAGCCTTG
TTTGCTTTCCGTGTTTCCGTTGTAACTGAATCTTCAATCTTCGGCCGTGT
ACTGTTCGACCATTCGatattaaaaattatttcaagagcaGTGATCGTAA
ATATCATCGCT Run BLAST on NCBI transcript from alignment at sc0000089:121126..123597- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009024 ID=TCONS_00009024|Name=TCONS_00009024|organism=Clytia hemisphaerica|type=transcript|length=2472bp|location=Sequence derived from alignment at sc0000089:121126..123597- (Clytia hemisphaerica)
TGCACGTAGAAATTAGTTCAGAGCGTTTATTCAAAAAATAAAAAACAATA
TACTTCTGTCAACTTCGAAGACAAAAAATATAATTCCAGTATCTAGTAGG
GGGAAATTTGTTAAATCGCTCGATTTTTTTAGTCAAAGCACTTATACATT
TTTGGAGAGCTAAGGGGTAGGGGAATCAAAATAACTTGGGTGCCAATTTT
GTTTCGGACATTTTGGTGTGATTTTCGGACAAATACGACGGTCTCGGGCA
AAAATCATAGGGTGAAAAATTAATGAAAATTTCAGCTTGAGAAAACGGAG
ACCTGTTGTATATTTTTGGAAAGCTCTCAAAAAATTAAGATTAGTGATAT
ATTGCGAGTATAGGTGATTTCTTTACCTAACTCGAGATATTAATCCTTAA
AAACAGTGTTTTTCAGCCAGAAACAGCTGTTTTGTCCAGTTTTTGCGCTT
TCGGAAGCTCAATATCTCGAGTTAGGTACTGAAATCACCTATACTAGCAA
TATATCACTAATCTTAATTTTTTGAGAGCTTTCCAAAAATATAGGAAAGT
ATAAGAAAAACTAAACAGTCATGCCCATGGTTGTTGAAATTGGATGCCTC
CATCTGCCAAATACTGATCCATACATAAATGGTGTCCTTCTTTTGTACAT
GCTTCAAATTTCGGCTTAGTGTGGTATAACAACCAACTCGACTTCAACCC
CTGTTGTCGCCAATGTTGAACATGTTTTAAAACACCAAGGCCATACCGGC
TACGTGCATATAGCCCTGGATTCGGTCTATTAGGTTGCCAGTGCCCTCCG
ATATAGAGTTTAGTATTGACTCCACCCTTGATTCGACTAGTCGGAAATGA
CCTTTTCAAAACCTTTTGTATTGTTTTAAAAATGCCTCGTGGATTCTTAT
AAATGTCTGATGGAAAGACGTAAAACCCCCAAACCTCAATGTTCCATTTA
CCTTTATCTATTCCAATGTATCCACAAGAGAATCTGGTAGTATCATTTAT
AGTTCTCGGGCATGCTTCATATTGGCCTTTAGAGAATGACATTCCGAGCT
TTTTCCACTCCGATTCCTGTTTTACTAGCGACGTGAAATTTTGACTTCGG
AAGAGGAAATCTTCGTCTATATCCCATGGTAGTGAATCTTGAAGTTTTAA
TGCTCCTAGGCCTGATCCAGCATAGATGCTGTATTGATAACCTAGCTTGT
CAAAGAGTTTAGAAGTATTAATCATCATTTTATGTAGATCTCTCATGCAA
GCTCTTTGCTCAAACATAGTTCTAGTTTTCGCCATATGTTTTTCGCATTT
TACCTTAGATTCAATGTCAGTAAATTCGATTCGTTTGTTATAAGTCCCTC
TATAAAATTCAGAAATGTCATTTTTTATTGCAAAATCAAGCCAGTTATTG
CGGGTTAGATTTATAAAATCACGCCATTTCTCCATATAGAATAAGCTAGA
CAGATGCGACTTCATAATTTTCAATTGCTTAGCCATGGTGTATATGATAT
CTGGATAAACTAACTCATCTGGACAATCTTTTCTAGCTTCCAAATAACCC
AAAAGAACGTCTCTGTCCATCGCAAATGGTCCATCAAAATAATCACATAG
AACTTTTTGTTGTTGATACATAACGTCGAAACCGAATTCAACTTTGTATT
GACTCCAAATTAATTTAGATTGGTAACATCCAGAACTCCAGTGGCCGTCT
GGATATAACGCCGATCCGGAAATGACATCACTTNTAACATCCAGAACTCC
AGTGGCCGTCTGGATATAACGCCGATCCGGAAATAACATCACTGGATCCT
TTCATTAAAGGATCTACAAAGTCCTTGATGTTAAACTCGTGGTGAATTTT
CGTTAATCGTCGGGTTAACATAACATATTTTGTAGAACTTTTTGAAGCAA
GAAACAATAAATTTTTTGCTAATGTATTGTCTTTTCGATTGAAGATCCTG
TTAAAAGTAGATTTGATAAAAGAAACTATTATGGAATCAGTTTTTACAAG
AACCCATTCCAAATTCGGCATTGCACTTTGAATTTTGGTCAATCTTTTTG
AATGTTTGTTGTAACTGGTTTCGTTCAAACCAATAAGAATATTGGCAGAT
TTACTCCAAGAAGGTAGTGTTTCAATGTCGTTTAATAAAGTTTCGATACT
TGAAATCTCATTGGCAGCGTTCAATATGATTGTGAGTTTATTGCCCAAGT
TATGTTTTTTTGTAAGGAGACCACCATTGATCCGACTCAATCGTGTGACC
AGTTTTTCCTCGAGTATTTCAATGAGGTCACTAAACTCTGGGTTTCTCTC
GAATCGTTTAGCGCGTGACATCTGCTTGAGAAACAAATCTAAATATCTGG
TGCCAGCCTTGTTTGCTTTCCGTGTTTCCGTTGTAACTGAATCTTCAATC
TTCGGCCGTGTACTGTTCGACCATTCGATATTAAAAATTATTTCAAGAGC
AGTGATCGTAAATATCATCGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009024-exon-sc0000089-1575043694:121921..123597 | TCONS_00009024-exon-sc0000089-1575043694:121921..123597 | Clytia hemisphaerica | exon |
| TCONS_00009024-exon-sc0000089-1575043694:121126..121859 | TCONS_00009024-exon-sc0000089-1575043694:121126..121859 | Clytia hemisphaerica | exon |
| TCONS_00009024-exon-sc0000089-1510915933:121921..123597 | TCONS_00009024-exon-sc0000089-1510915933:121921..123597 | Clytia hemisphaerica | exon |
| TCONS_00009024-exon-sc0000089-1510915933:121126..121859 | TCONS_00009024-exon-sc0000089-1510915933:121126..121859 | Clytia hemisphaerica | exon |
| TCONS_00009024-exon-sc0000089-1491911889:121921..123597 | TCONS_00009024-exon-sc0000089-1491911889:121921..123597 | Clytia hemisphaerica | exon |
| TCONS_00009024-exon-sc0000089-1491911889:121126..121859 | TCONS_00009024-exon-sc0000089-1491911889:121126..121859 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:121126..123597 - |
Blast
The following BLAST results are available for this feature:
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