TCONS_00009018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009018
Unique NameTCONS_00009018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009018 ID=TCONS_00009018|Name=TCONS_00009018|organism=Clytia hemisphaerica|type=transcript|length=1341bp
CNTCATAAATCGCACACGAAAGAATATCGTTCGACCTGTCCGCAAATTCT
TCCGGACATTAGATGGAACAAAAACTGAAGATGAATTTACTGAAAATGAA
GGAGATACTCCAGCTAAAGAACCTGATCGAgtTCGTTTTTCGAGTGTTAA
TGAAGCCGGTGAACAAAGGAACGGTTATGGAAGCATCAACCACACTAATG
ATGACACCGAAACATTGTTGTAAAAAGTAGGAAATTGGCTTTGGGTGGGA
TTGAAAAAGGTTGATGGAGATTGTTGCGTTTTCATtgtgtttcatcttta
tttatGAAGTGTTCTCTTTCAATATTGAGTTGAAATCAAatcaacatttt
aaaaatgtGTTCTTTTACGGGAAATCCTTTGGATACCGATGTACCTTGTA
CGTTAAAATCGCGTTTTCAGCCCAATGGTTTTTAAAAATGACCTTTTCTG
AGTGGACTACTTGGCAGAAGAAGAGTaaattatcattgttttgatcaTGG
TCCAAATTTATTAGTATTACAACATTTACAAATTAATGCATGCAGATTTT
AGACAACATTCAGCCAAATTATTTATCGAAATTGTTGATTTTCATTTGAT
TGATTTCGTTTGATCTACTCCCTTTTTTTtatacaagctttttttataat
aataacttctataagaataccaGGGTAAGATTTCagagttagaacaatag
gcctattgtttagaacaattgaaaaataagaataattctcaccctcagcc
aaagtacactattcttttttttaaaagcgtGTATTCAATTTCAAAGTATT
TGTAATTACTTTGTTATAAGATAGGTCACATTTTATTGgccaaaagaaaa
taaaaataaaaattacgaTCTTAGTTATAATCGTGGACGGAACCGATGTT
TCTCGTCAAGCCCCTTCCCCCTCACTTTCAGTCTGGCTCGAATTTCAGGT
AGAAACATACAAACAGGTTTGTCCAAGATTGTACTCTGGTATTATGCATG
TACTTGTAAGAACATCATATCGTATTTATGGTAATTatcattttatttat
attcacaaagatttttgaaacgcaatttttaatgatttagatttttagct
tactttaaataaaaaacactaGTGAAATCGTTGtgcttttgttaaaaaaa
actatttggGAATTGACAACTTTTGGAAAGTTTCAGCCTTGTTCTGAACG
TTATACATAATTTTCTTTTAGCCATTAATCAAATATTTTCTAGGGTTTGT
AGCATCTACTTTTGTTGTTTTACATTGTTTATACATTTCCATTTACTTTT
GTTATATATTATATCTATTCTTTCTAGGTGTAGTAGCCAAA
Run BLAST on NCBI

transcript from alignment at sc0000089:69855..71426-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009018 ID=TCONS_00009018|Name=TCONS_00009018|organism=Clytia hemisphaerica|type=transcript|length=1572bp|location=Sequence derived from alignment at sc0000089:69855..71426- (Clytia hemisphaerica)
CNTCATAAATCGCACACGAAAGAATATCGTTCGACCTGTCCGCAAATTCT
TCCGGACATTAGATGGAACAAAAACTGAAGATGAATTTACTGAAAATGAA
GGAGATACTCCAGCTAAAGAACCTGATCGAGTGAGATTTTTTTGAGAGTG
TTTATGGTCTCTGGTTTTAATAGCAGATCTATTGTTTTAATAGAACAATG
AGAATGTTTAGGATCATTTCCATCTATAAAATGCATACGAAATGCACTCA
CTGCTCTTTCACCTAAAGATAGTTGGACAGAAATTCTATGTATTATATAC
GACATCTTAAGGATGTTTAAAAATGGAATCTCATTGACGACAATTTTTTT
TACTTTTTTAGGTTCGTTTTTCGAGTGTTAATGAAGCCGGTGAACAAAGG
AACGGTTATGGAAGCATCAACCACACTAATGATGACACCGAAACATTGTT
GTAAAAAGTAGGAAATTGGCTTTGGGTGGGATTGAAAAAGGTTGATGGAG
ATTGTTGCGTTTTCATTGTGTTTCATCTTTATTTATGAAGTGTTCTCTTT
CAATATTGAGTTGAAATCAAATCAACATTTTAAAAATGTGTTCTTTTACG
GGAAATCCTTTGGATACCGATGTACCTTGTACGTTAAAATCGCGTTTTCA
GCCCAATGGTTTTTAAAAATGACCTTTTCTGAGTGGACTACTTGGCAGAA
GAAGAGTAAATTATCATTGTTTTGATCATGGTCCAAATTTATTAGTATTA
CAACATTTACAAATTAATGCATGCAGATTTTAGACAACATTCAGCCAAAT
TATTTATCGAAATTGTTGATTTTCATTTGATTGATTTCGTTTGATCTACT
CCCTTTTTTTTATACAAGCTTTTTTTATAATAATAACTTCTATAAGAATA
CCAGGGTAAGATTTCAGAGTTAGAACAATAGGCCTATTGTTTAGAACAAT
TGAAAAATAAGAATAATTCTCACCCTCAGCCAAAGTACACTATTCTTTTT
TTTAAAAGCGTGTATTCAATTTCAAAGTATTTGTAATTACTTTGTTATAA
GATAGGTCACATTTTATTGGCCAAAAGAAAATAAAAATAAAAATTACGAT
CTTAGTTATAATCGTGGACGGAACCGATGTTTCTCGTCAAGCCCCTTCCC
CCTCACTTTCAGTCTGGCTCGAATTTCAGGTAGAAACATACAAACAGGTT
TGTCCAAGATTGTACTCTGGTATTATGCATGTACTTGTAAGAACATCATA
TCGTATTTATGGTAATTATCATTTTATTTATATTCACAAAGATTTTTGAA
ACGCAATTTTTAATGATTTAGATTTTTAGCTTACTTTAAATAAAAAACAC
TAGTGAAATCGTTGTGCTTTTGTTAAAAAAAACTATTTGGGAATTGACAA
CTTTTGGAAAGTTTCAGCCTTGTTCTGAACGTTATACATAATTTTCTTTT
AGCCATTAATCAAATATTTTCTAGGGTTTGTAGCATCTACTTTTGTTGTT
TTACATTGTTTATACATTTCCATTTACTTTTGTTATATATTATATCTATT
CTTTCTAGGTGTAGTAGCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005043XLOC_005043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009018-exon-sc0000089-1575043694:71297..71426TCONS_00009018-exon-sc0000089-1575043694:71297..71426Clytia hemisphaericaexon
TCONS_00009018-exon-sc0000089-1575043694:69855..71065TCONS_00009018-exon-sc0000089-1575043694:69855..71065Clytia hemisphaericaexon
TCONS_00009018-exon-sc0000089-1510915933:71297..71426TCONS_00009018-exon-sc0000089-1510915933:71297..71426Clytia hemisphaericaexon
TCONS_00009018-exon-sc0000089-1510915933:69855..71065TCONS_00009018-exon-sc0000089-1510915933:69855..71065Clytia hemisphaericaexon
TCONS_00009018-exon-sc0000089-1491911889:71297..71426TCONS_00009018-exon-sc0000089-1491911889:71297..71426Clytia hemisphaericaexon
TCONS_00009018-exon-sc0000089-1491911889:69855..71065TCONS_00009018-exon-sc0000089-1491911889:69855..71065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:69855..71426 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.582271	0.718581	0.729294	0.847736	0	0	0.0992723	0.0963276	1.16253	1.32958	0.429329	1.16054	1.78128	1.69998	1.19762	1.23398	0.747079	0.805923	1.28162	1.34769	1.24883	1.26798	1.23776	0.540132	0	0	0.57817	0.61104	0.96392	0.507547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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