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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008996 ID=TCONS_00008996|Name=TCONS_00008996|organism=Clytia hemisphaerica|type=transcript|length=797bp
GAAAAATCCAAGTGGTTAATCCAAATCAAAAAGGGTTACATCCAATGCCC
GTTCAAAGGATGCAATTGGAAGTTTTTTACTGCATACGAGCTTGGCTATC
ACTTGGATGGTAATTGCCCCCATGGAACTTACCAAGATCAAATACCATGC
CCACATTGTGATAAGTCTTTACCTTGGCGCCAGTTGAAACAACATACAAC
AAATTCTCACAGAGATATCACAAGGGCATTGACTGGATTATTTGATGGCA
AAACTTTGAAATGTTTAAATTACAAATGTAGTAGAACCTTCAGTCCTGGA
TTTGACAATTGCCTTGAGTATATGAAGCATTCCATTACTTGTAAACCATT
GTTCCAATGCAAGAAATGCAAGCGAGAATTTGGcagtgaaaaatatttaa
atttcaaCCATACCAAAGAACAGTGTCAATCAGATCCAAAATCAGCAGGT
GGGAAGTGGATAAGTGAAGAAATTATTCCAACCAATATTAATCATGCTGC
TACAAAACCATCTGCaataaaaggaaaagaaaaggcACTCATTCAAACTT
GGAAAACTGCTATCAAAGCTGGGAAATTGAAGTGTCTCATACCAAATTGT
AAAGCAAAGTATTTTTCTCCAAGAGCATGGATGAAGCATCTGTTAGCTGA
GGCTGAAGTGGAGATCGATTTTTTCGCAAAAGTGAATCAAACTGAAATCG
GATGTCCTTATTGTTCTTTAGAAATGCCATGGCAATCATTGGCTGTTCAT
TTTAATAATAACCATAGAGATGTAAGAGTATTTTATGTATTATTGCG Run BLAST on NCBI transcript from alignment at sc0000089:309138..311021+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008996 ID=TCONS_00008996|Name=TCONS_00008996|organism=Clytia hemisphaerica|type=transcript|length=1884bp|location=Sequence derived from alignment at sc0000089:309138..311021+ (Clytia hemisphaerica)
GAAAAATCCAAGTGGTTAATCCAAATCAAAAAGGGTTACATCCAATGCCC
GTTCAAAGGATGCAATTGGAAGTTTTTTACTGCATACGAGCTTGGCTATC
ACTTGGATGGTAATTGCCCCCATGGAACTTACCAAGATCAAATACCATGC
CCACATTGTGATAAGTCTTTACCTTGGCGCCAGTTGAAACAACATACAAC
AAATTCTCACAGAGATGTAAACACTTTAACTTTGTTTCTTTGGTTTGGCC
AAGGATTTGGGTTACTTTTGGTTTATCCCATGATTCTTTTTTACCAACCC
ATTAAATTTGCTTTTTAACCACAGAATATTGTTTAAAAGATTTAACTTAG
ATCTTGCTTTTATAATTTGACTTCTAACTAATCGTACATATTGATACTAT
TATCTTGTAATAAGAAAGTGAGAAATGACAAGGGTACAACTTGTTTTGAT
gaatattgaatttcttttttcttcatatttttagATCACAAGGGCATTGA
CTGGATTATTTGATGGCAAAACTTTGAAATGTTTAAATTACAAATGTAGT
AGAACCTTCAGTCCTGGATTTGACAATTGCCTTGAGTATATGAAGCATTC
CATTACTTGTAAACCATTGTTCCAATGCAAGAAATGCAAGCGAGAATTTG
GcagtgaaaaatatttaaatttcaaCCATACCAAAGAACAGTGTCAATCA
GATCCAAAATCAGCAGGTGGGGTAAgtgaaaattgataattatgtaagta
agttaaaataaaaaatttggccTGTTAATAAtttaaatattatatatatt
atgatatgatatgagccctccccacTGGGGAATCGGTCCTACTCCTTGCG
AAGTTGGAACGCTTAGTGCTGTCCAGACACTGCTGGTTCTGTGCACCCGA
GACACAGATACCATGATGCATAGTGATGACACTCCAACGACGCAGGAGAG
CATATAGCTCGTCGCAGGCGCGGAACGGGATGAGTGACACCACACATCAC
AATGCCTGGCAtatcacccacactcttgtatcagagtagtggtacccaat
taattcccctcacatggtatgggttgacctggGCGAAAGTGTGTTCATTT
ACCAAGTGAACTGTAGTATTacagtgggaatcgaactcggGTCTCCCAGA
CGGGAGTCAAGAGTGATGACCAGCACACCACTACGCCTATATTTCATtca
aatattatatatatttaaataaaatttgctCTGCTAGTGAGAGTTTTTGA
ATTATGTTATTTTAGAAGTGGATAAGTGAAGAAATTATTCCAACCAATAT
TAATCATGCTGCTACAAAACCATCTGCaataaaaggaaaagaaaaggtCA
GTCCCAAGATTCTTTTCATGCTCTTTTATTGATGGAAATTCATACATGTG
GCTAAAATAAATGATGATGATTATgttatgaaaaatgaaatgaaaattcc
aATTTTGATGATGCATGACACATTTATGGAATCCCTCAGAAAATGGTGTG
ACTTGTATATGACTACGTTATTCCACACCTTTTTCTACTATCTTTTGTAT
TCCAACACATGTTGGGTtcataagataagataaaaaacaaataacaaaat
tccaatttaaatatttttcaggcACTCATTCAAACTTGGAAAACTGCTAT
CAAAGCTGGGAAATTGAAGTGTCTCATACCAAATTGTAAAGCAAAGTATT
TTTCTCCAAGAGCATGGATGAAGCATCTGTTAGCTGAGGCTGAAGTGGAG
ATCGATTTTTTCGCAAAAGTGAATCAAACTGAAATCGGATGTCCTTATTG
TTCTTTAGAAATGCCATGGCAATCATTGGCTGTTCATTTTAATAATAACC
ATAGAGATGTAAGAGTATTTTATGTATTATTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008996-exon-sc0000089-1491911889:309138..309353 | TCONS_00008996-exon-sc0000089-1491911889:309138..309353 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1510915933:309138..309353 | TCONS_00008996-exon-sc0000089-1510915933:309138..309353 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1575043694:309138..309353 | TCONS_00008996-exon-sc0000089-1575043694:309138..309353 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1491911889:309622..309858 | TCONS_00008996-exon-sc0000089-1491911889:309622..309858 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1510915933:309622..309858 | TCONS_00008996-exon-sc0000089-1510915933:309622..309858 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1575043694:309622..309858 | TCONS_00008996-exon-sc0000089-1575043694:309622..309858 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1491911889:310403..310483 | TCONS_00008996-exon-sc0000089-1491911889:310403..310483 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1510915933:310403..310483 | TCONS_00008996-exon-sc0000089-1510915933:310403..310483 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1575043694:310403..310483 | TCONS_00008996-exon-sc0000089-1575043694:310403..310483 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1491911889:310759..311021 | TCONS_00008996-exon-sc0000089-1491911889:310759..311021 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1510915933:310759..311021 | TCONS_00008996-exon-sc0000089-1510915933:310759..311021 | Clytia hemisphaerica | exon |
| TCONS_00008996-exon-sc0000089-1575043694:310759..311021 | TCONS_00008996-exon-sc0000089-1575043694:310759..311021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:309138..311021 + |
Blast
The following BLAST results are available for this feature:
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