TCONS_00008995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008995
Unique NameTCONS_00008995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008995 ID=TCONS_00008995|Name=TCONS_00008995|organism=Clytia hemisphaerica|type=transcript|length=841bp
CATCATTTTACCAAAGAAGAAAGAACAAAATGACATTCAAGTTTGAAAAA
TCTAAGTGGTTAATCCAAATCAAAAAGGGTGACATCCAATGCCCGTTCAA
AGGATGCAATTGGAAGTTTTTTACTGCATACGAGCTTGGCTATCACTTGG
ATGGTAATTGCCCCCATGGAACTTACCAAGATCAAATACCATGCCCACAT
TGTGATAAGTCTTTACCTTGGCGCCAGTTGAAACAACATACAACAAATTC
TCACAGAGATATCACAAGGGCATTGACTGGATTATTTGATGGCAAAACTT
TGAAATGTTTAAATTACAAATGTAGTAGAACCTTCAGTCCTGGATTTGAC
AATTGCCTTGAGTATATGAAGCATTCCATTACTTGTAAACCATTGTTCCA
ATGCAAGAAATGCAAGCGAGAATTTGGcagtgaaaaatatttaaatttca
aCCATACCAAAGAACAGTGTCAATCAGATCCAAAATCAGCAGGTGGGAAG
TGGATAAGTGAAGAAATTATTCCAACCAATATTAATCATGCTGCTACAAA
ACCATCTGCaataaaaggaaaagaaaaggcACTCATTCAAACTTGGAAAA
CTGCTATCAAAGCTGGGAAATTGAAGTGTCTCATACCAAATTGTAAAGCA
AAGTATTTTTCTCCAAGAGCATGGATGAAGCATCTGTTAGCTGAGGCTGA
AGTGGAGATCGATTTTTTCGCAAAAGTGAATCAAACTGAAATCGGATGTC
CTTATTGTTCTTTAGAAATGCCATGGCAATCATTGGCTGTTCATTTTAAT
AATAACCATAGAGATGTAAGAGTATTTTATGTATTATTGCG
Run BLAST on NCBI

protein sequence of TCONS_00008995-protein

>TCONS_00008995-protein ID=TCONS_00008995-protein|Name=TCONS_00008995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
SFYQRRKNKMTFKFEKSKWLIQIKKGDIQCPFKGCNWKFFTAYELGYHLD
GNCPHGTYQDQIPCPHCDKSLPWRQLKQHTTNSHRDITRALTGLFDGKTL
KCLNYKCSRTFSPGFDNCLEYMKHSITCKPLFQCKKCKREFGSEKYLNFN
HTKEQCQSDPKSAGGKWISEEIIPTNINHAATKPSAIKGKEKALIQTWKT
AIKAGKLKCLIPNCKAKYFSPRAWMKHLLAEAEVEIDFFAKVNQTEIGCP
YCSLEMPWQSLAVHFNNNHRDVRVFYVLL
Run BLAST on NCBI

transcript from alignment at sc0000089:308363..311021+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008995 ID=TCONS_00008995|Name=TCONS_00008995|organism=Clytia hemisphaerica|type=transcript|length=2659bp|location=Sequence derived from alignment at sc0000089:308363..311021+ (Clytia hemisphaerica)
CATCATTTTACCAAAGAAGAAAGAACAAAATGACATTCAAGGTGAATTTT
AGTTGACAcccttttttaatgatttccaGCCCGTATAATAATTGCTCTCT
TTGTCAAATTATCACAAAGATTATGCCATTAGGCTGTAAAAGAAATTATG
ACACTGGTGAATGTGTTTTTGAAATCCCAATTCAGAattgtgtgattttt
tttttgatttgtatttATACTCTATCTTTAGTTTGAAAAATCTAAGTGGT
TAATCCAAATCAAAAAGGGTGACATCCAATGCCCGTTCAAAGGATGCAAT
TGGAAGTTTTTTACTGCATACGAGCTTGGCTATCACTTGGATGGTAATTG
CCCCCATGGAACTTACCAAGATCAAATACCATGCCCACATTGTGATAAGT
CTTTACCTTGGCGCCAGTTGAAACAACATACAACAAATTCTCACAGAGAT
GTAAACACTTTAACTTTGTTTCTTTGGTTTGGCCAAGGATTTGGGTTACT
TTTGGTTTATCCCATGATTCTTTTTTACCAACCCATTAAATTTGCTTTTT
AACCACAGNAAGATGACATTCAAGGTGAATTTTAGTTGACAccctttttt
aatgatttccaGCCCCAACAGTATAATAATTGCTCTCTTTGTCAAATTAT
CACAAAGAGTATGCCATTAGGCTGTAAAAGAAATAATGACACTGGTGAat
gtgtttttgaaatttttgaatcatttttttgtcaagcttttttttttatt
tgtatttacACTTTATCTTTAGTGTGAAAAATCCAAGTGGTTAATCCAAA
TCAAAAAGGGTTACATCCAATGCCCGTTCAAAGGATGCAATTGGAAGTTT
TTTACTGCATACGAGCTTGGCTATCACTTGGATGGTAATTGCCCCCATGG
AACTTACCAAGATCAAATACCATGCCCACATTGTGATAAGTCTTTACCTT
GGCGCCAGTTGAAACAACATACAACAAATTCTCACAGAGATGTAAACACT
TTAACTTTGTTTCTTTGGTTTGGCCAAGGATTTGGGTTACTTTTGGTTTA
TCCCATGATTCTTTTTTACCAACCCATTAAATTTGCTTTTTAACCACAGA
ATATTGTTTAAAAGATTTAACTTAGATCTTGCTTTTATAATTTGACTTCT
AACTAATCGTACATATTGATACTATTATCTTGTAATAAGAAAGTGAGAAA
TGACAAGGGTACAACTTGTTTTGATgaatattgaatttcttttttcttca
tatttttagATCACAAGGGCATTGACTGGATTATTTGATGGCAAAACTTT
GAAATGTTTAAATTACAAATGTAGTAGAACCTTCAGTCCTGGATTTGACA
ATTGCCTTGAGTATATGAAGCATTCCATTACTTGTAAACCATTGTTCCAA
TGCAAGAAATGCAAGCGAGAATTTGGcagtgaaaaatatttaaatttcaa
CCATACCAAAGAACAGTGTCAATCAGATCCAAAATCAGCAGGTGGGGTAA
gtgaaaattgataattatgtaagtaagttaaaataaaaaatttggccTGT
TAATAAtttaaatattatatatattatgatatgatatgagccctccccac
TGGGGAATCGGTCCTACTCCTTGCGAAGTTGGAACGCTTAGTGCTGTCCA
GACACTGCTGGTTCTGTGCACCCGAGACACAGATACCATGATGCATAGTG
ATGACACTCCAACGACGCAGGAGAGCATATAGCTCGTCGCAGGCGCGGAA
CGGGATGAGTGACACCACACATCACAATGCCTGGCAtatcacccacactc
ttgtatcagagtagtggtacccaattaattcccctcacatggtatgggtt
gacctggGCGAAAGTGTGTTCATTTACCAAGTGAACTGTAGTATTacagt
gggaatcgaactcggGTCTCCCAGACGGGAGTCAAGAGTGATGACCAGCA
CACCACTACGCCTATATTTCATtcaaatattatatatatttaaataaaat
ttgctCTGCTAGTGAGAGTTTTTGAATTATGTTATTTTAGAAGTGGATAA
GTGAAGAAATTATTCCAACCAATATTAATCATGCTGCTACAAAACCATCT
GCaataaaaggaaaagaaaaggtCAGTCCCAAGATTCTTTTCATGCTCTT
TTATTGATGGAAATTCATACATGTGGCTAAAATAAATGATGATGATTATg
ttatgaaaaatgaaatgaaaattccaATTTTGATGATGCATGACACATTT
ATGGAATCCCTCAGAAAATGGTGTGACTTGTATATGACTACGTTATTCCA
CACCTTTTTCTACTATCTTTTGTATTCCAACACATGTTGGGTtcataaga
taagataaaaaacaaataacaaaattccaatttaaatatttttcaggcAC
TCATTCAAACTTGGAAAACTGCTATCAAAGCTGGGAAATTGAAGTGTCTC
ATACCAAATTGTAAAGCAAAGTATTTTTCTCCAAGAGCATGGATGAAGCA
TCTGTTAGCTGAGGCTGAAGTGGAGATCGATTTTTTCGCAAAAGTGAATC
AAACTGAAATCGGATGTCCTTATTGTTCTTTAGAAATGCCATGGCAATCA
TTGGCTGTTCATTTTAATAATAACCATAGAGATGTAAGAGTATTTTATGT
ATTATTGCG

Coding sequence (CDS) from alignment at sc0000089:308363..311021+

>TCONS_00008995 ID=TCONS_00008995|Name=TCONS_00008995|organism=Clytia hemisphaerica|type=CDS|length=4185bp|location=Sequence derived from alignment at sc0000089:308363..311021+ (Clytia hemisphaerica)
TCATTTTACCAAAGAAGAAAGAACAAAATGACATTCAAGTTTGAAAAATC
TAAGTGGTTAATCCAAATCAAAAAGGGTGACATCCAATGCCCGTTCAAAG
GATGCAATTGGAAGTTTTTTACTGCATACGAGCTTGGCTATCACTTGGAT
GGTAATTGCCCCCATGGAACTTACCAAGATCAAATACCATGCCCACATTG
TGATAAGTCTTTACCTTGGCGCCAGTTGAAACAACATACAACAAATTCTC
ACAGAGATATCACAAGGGCATTGACTGGATTATTTGATGGCAAAACTTTG
AAATGTTTAAATTACAAATGTAGTAGAACCTTCAGTCCTGGATTTGACAA
TTGCCTTGAGTATATGAAGCATTCCATTACTTGTAAACCATTGTTCCAAT
GCAAGAAATGCAAGCGAGAATTTGGcagtgaaaaatatttaaatttcaaC
CATACCAAAGAACAGTGTCAATCAGATCCAAAATCAGCAGGTGGGAAGTG
GATAAGTGAAGAAATTATTCCAACCAATATTAATCATGCTGCTACAAAAC
CATCTGCaataaaaggaaaagaaaaggcACTCATTCAAACTTGGAAAACT
GCTATCAAAGCTGGGAAATTGAAGTGTCTCATACCAAATTGTAAAGCAAA
GTATTTTTCTCCAAGAGCATGGATGAAGCATCTGTTAGCTGAGGCTGAAG
TGGAGATCGATTTTTTCGCAAAAGTGAATCAAACTGAAATCGGATGTCCT
TATTGTTCTTTAGAAATGCCATGGCAATCATTGGCTGTTCATTTTAATAA
TAACCATAGAGATGTAAGAGTATTTTATGTATTATTGTCATTTTACCAAA
GAAGAAAGAACAAAATGACATTCAAGTTTGAAAAATCTAAGTGGTTAATC
CAAATCAAAAAGGGTGACATCCAATGCCCGTTCAAAGGATGCAATTGGAA
GTTTTTTACTGCATACGAGCTTGGCTATCACTTGGATGGTAATTGCCCCC
ATGGAACTTACCAAGATCAAATACCATGCCCACATTGTGATAAGTCTTTA
CCTTGGCGCCAGTTGAAACAACATACAACAAATTCTCACAGAGATATCAC
AAGGGCATTGACTGGATTATTTGATGGCAAAACTTTGAAATGTTTAAATT
ACAAATGTAGTAGAACCTTCAGTCCTGGATTTGACAATTGCCTTGAGTAT
ATGAAGCATTCCATTACTTGTAAACCATTGTTCCAATGCAAGAAATGCAA
GCGAGAATTTGGcagtgaaaaatatttaaatttcaaCCATACCAAAGAAC
AGTGTCAATCAGATCCAAAATCAGCAGGTGGGAAGTGGATAAGTGAAGAA
ATTATTCCAACCAATATTAATCATGCTGCTACAAAACCATCTGCaataaa
aggaaaagaaaaggcACTCATTCAAACTTGGAAAACTGCTATCAAAGCTG
GGAAATTGAAGTGTCTCATACCAAATTGTAAAGCAAAGTATTTTTCTCCA
AGAGCATGGATGAAGCATCTGTTAGCTGAGGCTGAAGTGGAGATCGATTT
TTTCGCAAAAGTGAATCAAACTGAAATCGGATGTCCTTATTGTTCTTTAG
AAATGCCATGGCAATCATTGGCTGTTCATTTTAATAATAACCATAGAGAT
GTAAGAGTATTTTATGTATTATTGTCATTTTACCAAAGAAGAAAGAACAA
AATGACATTCAAGTTTGAAAAATCTAAGTGGTTAATCCAAATCAAAAAGG
GTGACATCCAATGCCCGTTCAAAGGATGCAATTGGAAGTTTTTTACTGCA
TACGAGCTTGGCTATCACTTGGATGGTAATTGCCCCCATGGAACTTACCA
AGATCAAATACCATGCCCACATTGTGATAAGTCTTTACCTTGGCGCCAGT
TGAAACAACATACAACAAATTCTCACAGAGATATCACAAGGGCATTGACT
GGATTATTTGATGGCAAAACTTTGAAATGTTTAAATTACAAATGTAGTAG
AACCTTCAGTCCTGGATTTGACAATTGCCTTGAGTATATGAAGCATTCCA
TTACTTGTAAACCATTGTTCCAATGCAAGAAATGCAAGCGAGAATTTGGc
agtgaaaaatatttaaatttcaaCCATACCAAAGAACAGTGTCAATCAGA
TCCAAAATCAGCAGGTGGGAAGTGGATAAGTGAAGAAATTATTCCAACCA
ATATTAATCATGCTGCTACAAAACCATCTGCaataaaaggaaaagaaaag
gcACTCATTCAAACTTGGAAAACTGCTATCAAAGCTGGGAAATTGAAGTG
TCTCATACCAAATTGTAAAGCAAAGTATTTTTCTCCAAGAGCATGGATGA
AGCATCTGTTAGCTGAGGCTGAAGTGGAGATCGATTTTTTCGCAAAAGTG
AATCAAACTGAAATCGGATGTCCTTATTGTTCTTTAGAAATGCCATGGCA
ATCATTGGCTGTTCATTTTAATAATAACCATAGAGATGTAAGAGTATTTT
ATGTATTATTGTCATTTTACCAAAGAAGAAAGAACAAAATGACATTCAAG
TTTGAAAAATCTAAGTGGTTAATCCAAATCAAAAAGGGTGACATCCAATG
CCCGTTCAAAGGATGCAATTGGAAGTTTTTTACTGCATACGAGCTTGGCT
ATCACTTGGATGGTAATTGCCCCCATGGAACTTACCAAGATCAAATACCA
TGCCCACATTGTGATAAGTCTTTACCTTGGCGCCAGTTGAAACAACATAC
AACAAATTCTCACAGAGATATCACAAGGGCATTGACTGGATTATTTGATG
GCAAAACTTTGAAATGTTTAAATTACAAATGTAGTAGAACCTTCAGTCCT
GGATTTGACAATTGCCTTGAGTATATGAAGCATTCCATTACTTGTAAACC
ATTGTTCCAATGCAAGAAATGCAAGCGAGAATTTGGcagtgaaaaatatt
taaatttcaaCCATACCAAAGAACAGTGTCAATCAGATCCAAAATCAGCA
GGTGGGAAGTGGATAAGTGAAGAAATTATTCCAACCAATATTAATCATGC
TGCTACAAAACCATCTGCaataaaaggaaaagaaaaggcACTCATTCAAA
CTTGGAAAACTGCTATCAAAGCTGGGAAATTGAAGTGTCTCATACCAAAT
TGTAAAGCAAAGTATTTTTCTCCAAGAGCATGGATGAAGCATCTGTTAGC
TGAGGCTGAAGTGGAGATCGATTTTTTCGCAAAAGTGAATCAAACTGAAA
TCGGATGTCCTTATTGTTCTTTAGAAATGCCATGGCAATCATTGGCTGTT
CATTTTAATAATAACCATAGAGATGTAAGAGTATTTTATGTATTATTGTC
ATTTTACCAAAGAAGAAAGAACAAAATGACATTCAAGTTTGAAAAATCTA
AGTGGTTAATCCAAATCAAAAAGGGTGACATCCAATGCCCGTTCAAAGGA
TGCAATTGGAAGTTTTTTACTGCATACGAGCTTGGCTATCACTTGGATGG
TAATTGCCCCCATGGAACTTACCAAGATCAAATACCATGCCCACATTGTG
ATAAGTCTTTACCTTGGCGCCAGTTGAAACAACATACAACAAATTCTCAC
AGAGATATCACAAGGGCATTGACTGGATTATTTGATGGCAAAACTTTGAA
ATGTTTAAATTACAAATGTAGTAGAACCTTCAGTCCTGGATTTGACAATT
GCCTTGAGTATATGAAGCATTCCATTACTTGTAAACCATTGTTCCAATGC
AAGAAATGCAAGCGAGAATTTGGcagtgaaaaatatttaaatttcaaCCA
TACCAAAGAACAGTGTCAATCAGATCCAAAATCAGCAGGTGGGAAGTGGA
TAAGTGAAGAAATTATTCCAACCAATATTAATCATGCTGCTACAAAACCA
TCTGCaataaaaggaaaagaaaaggcACTCATTCAAACTTGGAAAACTGC
TATCAAAGCTGGGAAATTGAAGTGTCTCATACCAAATTGTAAAGCAAAGT
ATTTTTCTCCAAGAGCATGGATGAAGCATCTGTTAGCTGAGGCTGAAGTG
GAGATCGATTTTTTCGCAAAAGTGAATCAAACTGAAATCGGATGTCCTTA
TTGTTCTTTAGAAATGCCATGGCAATCATTGGCTGTTCATTTTAATAATA
ACCATAGAGATGTAAGAGTATTTTATGTATTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005037XLOC_005037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008995-exon-sc0000089-1491911889:308363..308403TCONS_00008995-exon-sc0000089-1491911889:308363..308403Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1510915933:308363..308403TCONS_00008995-exon-sc0000089-1510915933:308363..308403Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1575043694:308363..308403TCONS_00008995-exon-sc0000089-1575043694:308363..308403Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1491911889:308594..308812TCONS_00008995-exon-sc0000089-1491911889:308594..308812Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1510915933:308594..308812TCONS_00008995-exon-sc0000089-1510915933:308594..308812Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1575043694:308594..308812TCONS_00008995-exon-sc0000089-1575043694:308594..308812Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1491911889:309622..309858TCONS_00008995-exon-sc0000089-1491911889:309622..309858Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1510915933:309622..309858TCONS_00008995-exon-sc0000089-1510915933:309622..309858Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1575043694:309622..309858TCONS_00008995-exon-sc0000089-1575043694:309622..309858Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1491911889:310403..310483TCONS_00008995-exon-sc0000089-1491911889:310403..310483Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1510915933:310403..310483TCONS_00008995-exon-sc0000089-1510915933:310403..310483Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1575043694:310403..310483TCONS_00008995-exon-sc0000089-1575043694:310403..310483Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1491911889:310759..311021TCONS_00008995-exon-sc0000089-1491911889:310759..311021Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1510915933:310759..311021TCONS_00008995-exon-sc0000089-1510915933:310759..311021Clytia hemisphaericaexon
TCONS_00008995-exon-sc0000089-1575043694:310759..311021TCONS_00008995-exon-sc0000089-1575043694:310759..311021Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008995-proteinTCONS_00008995-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:308363..311021 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88302	0	3.43661	1.87996	6.92161	4.64756	3.49994	4.63298	2.12539	1.53739	0	1.67312	0.957291	1.38625	0.167609	2.59719	2.95905	0.94884	1.65885	2.28756	1.00916	2.00142	0	0.577207	5.95201	4.1766	0	0	0.434264	1.42959
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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