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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008993 ID=TCONS_00008993|Name=TCONS_00008993|organism=Clytia hemisphaerica|type=transcript|length=1714bp CTGAAAAGTAATCAGATTTTGAATTTCCACTCTCAAGGTTTTGGACCTTT ATTTATTCAAACCTAATTTAAACCCTATTTAGACataaatttatttaaaa caaatttatttattgCAAATAATTATTAgtaacattttcttttcttttat gcTTAATTATTTACCgaaatttattttatcatttacCTTTTTGAAATGTA AAGAAATTAAAGATGTGATTTTTCTAACAAAATTGTGATTTTTCGTAATT TCATTTTTGGTGTCTAAAGCTTTGAAATTACTTTAAGTCAATCAAAAGTT TTAATTATcgcattgaaaaaaaaaaatacaaaatatactTCTATTTTATT TATTGAAGTGGTCTGACACTTGGGACACACCCTGACACTTTGGAACATCC TGTATGCATCTAATTTCTTAAATATTTCTTCCAAAGAATTACCCACTATA ATATTAAAATACTCAAAATGGCTAAATGGGAAGCCTTAATTAAACCTGAA AAGGAAATAATTGAGCAGGTTGTTAGTTTGACAAAAGAATCTAGTGAAGA CGATTGGAAAGATGTTGTTAAAGAAATGGTGCACAAGGACCTTTTCAAGC GTTATCTTTGCAATTATGGAACAAATGAAAAGTCTCCCTTCCCAAGCAAA ATGTGGACCATCCAACATCATGCAGCTCACTTTAATGCTCCTATTGAAAT AATCGAATTCATGGTTGAAAAGCACTTTCCAATGTCTTTCAAAGATGGCG AGGGCAAGACTCCAGCTGATCATCTTGATGTAAATGTTGATTGCAATTAT AAGGCATTGTTCATGCCTAGGTATGGcctttcaaatttaaatttggagaa tctgcaaaagattgaagaaaatttccatGCTGTGATTAATGGAAGAGTCA AAGATTTGGTTGACAAGTATGACTTAATTCTCCCACAGTTATCTGTTTCC CTAGAAGTTCAAGTAGCTATAGAATTTCTTGACAATGGATATTGTGCTAT CCCTGGGATGTATGGTGGTTTCACAATTGAATTCCAGTTTAATGCAGATA AGAGTGATGTTGATCATCTCTTAACTAGCAGTTGGTGTCGGATAGCAGGT GGCTCTGGTCAAACACACAAATGTACACCAGAACAGTCAGAATTAATTGA ATCAGGTTTTGCATAATGTTGAAGTTTAATATTCTTATAGGAATTTTTTA TGCCTACTGTATTTTTAGATTATTCTCTTGTAGTAGTTGAGTATTCAAAT ATAATAGCCATTCTTTTTCACTGTTCaacaaattaatcaaaaattttgag aaaggcaaatttttttctcagctaTTAAATTCATCACAAACAAATTAGCA CAATATTTATACATTCATTAAAGAAAACCTGCTGCTGTCATCGATTATCA GCTGATTTTGTACTTTAATCGAGTTTGTGATTGAGTTTTTCTGACAAGTC TCACTCATACCattatttgaaatgttttaattttgagactaaaaagtaat tttaaacaaattttctcaaaccttattattttattattagcACAATGTAA AAGAACTGAATTATGATTTTTATACTGACTTTTTTTGTAATCTAATTTAC ATATTATTTACATTTACACACTATTTATTATTTCTAAAGTAATCACTATT TTAATATATCTCTGCCTTATTGTATTGTAAACGCATGTAtaatcttttat aaaaacaaaatttc Run BLAST on NCBI transcript from alignment at sc0000089:298712..307938+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008993 ID=TCONS_00008993|Name=TCONS_00008993|organism=Clytia hemisphaerica|type=transcript|length=9227bp|location=Sequence derived from alignment at sc0000089:298712..307938+ (Clytia hemisphaerica) CTGAAAAGTAATCAGATTTTGAATTTCCACTCTCAAGGTTTTGGACCTTT
ATTTATTCAAACCTAATTTAAACCCTATTTAGACataaatttatttaaaa
caaatttatttattgCAAATAATTATTAgtaacattttcttttcttttat
gcTTAATTATTTACCgaaatttattttatcatttacCTTTTTGAAATGTA
AAGAAATTAAAGATGTGATTTTTCTAACAAAATTGTGATTTTTCGTAATT
TCATTTTTGGTGTCTAAAGCTTTGAAATTACTTTAAGTCAATCAAAAGTT
TTAATTATcgcattgaaaaaaaaaaatacaaaatatactTCTATTTTATT
TATTGAAGTGGTCTGACACTTGGGACACACCCTGACACTTTGGAACATCC
TGTATGCATCTAATTTCTTAAATATTTCTTCCAAAGAATTACCCACTATA
ATATTAAAATACTCAAAATGGCTAAATGGGAAGCCTTAATTAAACCTGAA
AAGGAAATAATTGAGCAGGTTGTTAGTTTGACAAAAGAATCTAGTGAAGA
CGATTGGAAAGATGTTGTTAAAGAAATGGTGCACAAGGACCTTTTCAAGC
GTTATCTTTGCAATTATGGAACAAATGAAAAGTCTCCCTTCCCAAGCAAA
ATGTGGACCATCCAACATCATGCAGCTCACTTTAATGCTCCTATTGAAAT
AATCGAATTCATGGTTGAAAAGCACATTCCAATGTCTATCAAAGATGGTG
AGGGCAAGACTCCAGCTGATCATCTTGATGTAAATGTTGATTGCAATTAT
AAGGCATTGTTCATGCCTAGGTATGGCCTTTCAAACTTAAATTTGGAGAA
TCtgcaaaagattgaagaaaatttccatGCTGTGATTAATGGAAGAGTCA
AAGATTTGGTTGACAAGTATGACTTAATTCTCCCACAGTTATCTGTTTCC
CTAGAAGTTCAAGTAGCTATAGAATTTCTCGACAATGGATATTGTGCTAT
CCCTGGGATGTATGGTGGTTTCACAATTGAATTTCAGTTGAATGCAGATA
AGAGTGATGTTAATCATCTCTTAACAAGCAGTTATTGTTGGATAGCAGGT
GGCTCTGGTCAAACACACAAATGTACACCAGAGCAGTCAGAATTAATTGA
ATCAGATTTTGCATAATGTTGAAGTTTAATATTCTACAGGAATTTTTTGT
GCCTTTAGATTATTCTCTCGAGTAGTTAAGTAttcaaattaatcaaaaat
cCGATACATGTCGGGAAAAATGGAAGTATAATAGCCACATATTTTTTCAC
TATTCaacaaattaataaaaaattttgaggaaggcaaatttttttctcag
ctaTTTAATTTACCATAAATAAATTAGCACAATATTTATACATTCATTAA
TGAAAAACTGCTGCTGTCACCGATTATCAGCTGATTTTTTACTTTCATTG
GGTTTGTGATTGAGTTTTTCTGACAAGTCCCACTCATACCattatttgaa
atgttttaattttgaaactaatactttcgcggggattaaattttgataGT
ATATAGTTTACGCTGTATTATTTTAATTTCTTGAAACTAAAAAACAATCT
ATTCCTACAAAGAAAATTAACAAACCTAGCAAAACACATACAAGTTTTGT
ATTTCTGatgcttaaaaagaaaaatcaagactgtaaaaaaaaatctaaaa
atctaaaatgaaaatattttgcagcCAACCAGTttaatgtaaagagatgg
aaaaacagcttcttcagAACAATAGACAAACGGCTtgtcatataccaggt
cctttgcccttaagggagtttgtttcgagctacatgttttttttataagc
attgcacttataagcatatctaggctcagatatggggaaaaattaagcat
atcgCAAGCATTAATTgggcctacgaaaaatgtttttttcctgattgggc
ccttccagaaaaaatccgttcatggggggtggaggatgaattgtccaggg
gtattgaaaaaataccaaaaaattgcaatgtccagggggtgaattccaat
gtccaggggtaattttttgtgtccacgggattgatttgatgtttgtccag
gggtataacccatgttcagggggttaaaaatcaaaatgtccaggggtaat
tcatgaagaaaataatatatcctccaccccccatgaacggattttttctg
gaagagcccattttggctttttttggctggaattttacggattttcagta
tttccctaaatttatgctttggATTTAAGCATCCCttaagcatttttcag
ctttattaagctttcgacctaagcatctctgagcctgttttcggattttt
gtatggttaggcaattacttttttattttctggtttacggacattataag
gaaaagttttggacaggaggatggaaaaaaaataaaaataaaattgatgt
ttaaaattttttttatttcctttttaaaaatctgaaatcggaggaaagaa
taaaataaaatttcatgaaatttcctAAAGTAtagattttttagatttaa
agacaaaagaatAGATGCAAGAAAAGTGCAAAATGTTGTTATAGATAGAG
TCTATggataaaaaacactaaaaataaaCTGAACCATAAAAATGTACACA
TAAAGACTGATATGTGTATATGTTAAACTGACAAAGGTTCCCATTTAGGG
TTCACCCCtagggttcccactttagggttcccacttaggttcccccatcc
cattTTTCTGGTATGCCTATTTTTATATCTACTCTTGAATTTTAACAATC
ACATCAGGGGGGGTCAAGCCTCAGGGTACTAAAGCATAGCCTAGAGAGGG
TACTTatctaaaaaagtttttgactCATACCACCCACCCAaataagtacc
cgggtacttaaggACTTTTCCTTCTTAGACCCTATacctacaaaaaataa
atttattactTATTAATCTTTCTCAATTCTACACTCATCAAAATTAAACC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTCCCCAcccacccaaaaag
tacccgggtacttatcaaattttttttggaaaaacaccCACCCCACCGGC
TATGCTTTAGTACCCTGAGGCTTGACCCCCCCTGATCACATAAAGAACTT
TAAATAAAAGCGattacaaaagaaagaaaaaaaatgaagaaaagtttgtt
tttttgtggaTAGGGAAATTCCATAGGGAAGTTCCCTGACATTAAGGGAA
GGATCAAAGTATCTTTACATTGGCAGAATAGGGCACAGCTGTGTTAGATC
ATTTAACTCCCTCTCTCTcattctcttcttttcttttgttttcctgtttt
aAGTAtaggttttttatttatttcttcttttttgaaggtcggaggagaaa
aagtaaataaaagtttttgaaatctctattttattatttttttattttgg
caaaaataacgtCGGCGGATCCataaaccaataaataaaaaagtatttgc
cttataaaaaaaaaacatgtaatggatttcttttgttgttgctttaaaaa
agttgtataattaGCGTGGTATGACGAAATTCTTATGTTTTAGGTCGAAT
TATGCATAAACTttaggggcttatattttggggagacctcttttatatca
aaagatacctatattttcttgctcagaattttctaGCAATTCTAATGATA
CAAGGGCTATAATGAAAATTTCCTTCCGACACTAAATTTTTCCAGAGAGG
TGTACAAATGGTGcaaaatctaagaaaaattaGGACCTGCCTTGGTATTA
AATGTCATTTTCCCATAGCATAAGCCTAATTAAAACTAAATCAAATATTA
ACGGGtgtttttgtaaactttttattATTGACCTAAATGATGACCAATTT
TCAAATAGCCCCTATAACAGCATCATGACTGCATAATTATATTAAAAGCT
AACAAAGTGcacgaaaataagaaatcaaatctgtctttgatgaatttcta
tcaaagtttttagaaataatttggtatcattgtgatgagaatttttcagA
CTTCAATTGTGAATGGTGTttgtttgtattttccaaggaaaagaaaattt
gtattttccaaggaaaatgataCAATTGTATTATCCTAGGAAAATGATTC
CCTTGTATTCCCAAAGGAAAATGCTTCTCTTGTTCTTTCCAAGGTAACTT
TCACTTGTATTCACttgtattttctgaggaaaatcaATCacttgtatttc
ccaaggaaactTTGTTGTGGTGTTTTAAAGGAGTTAAATCTACCTACCAG
ACTTTGACAACCAAAGAGATCTTTTTGGTAAAAATGAAGCATACAAGGGA
TGATTAACATACATCAACATTGTAATAACTGTTCCTCAAAACTACATCCT
GTAATCAATTACTTGTTCCACTTTAAAAGACAACATCACAAGANCCTCAA
AACAACATCCTGTAATCAATTACTTGTTCCACTTTAAATGACAACATCAC
AAGCCAAAGGCTATGGAATTATTGACAAGCTGAGATATTCATGACAACTC
ATTCCAGAATAATTCATTATCAGGTCAACATTCAAAATGTTCAATGTCAC
CTCCAGTGTTCATATCTTGCATCCTATCAGCATGCTATCATCAAGGTACA
GTCACAAATCCATTACACCACATACAAGCATACCAGATAACATGAAATAA
CAATTCTGAAGCTGATTATTTCTCATCTAGATCCAAAATGTCTTGGATTG
GGTTCCTTCAATTTCCAAATGAAGTCACACATTTGATcgaaaatataata
tatacccaatttgaatgaaaaagctACAACAGAACAATGGAATGAATGTC
TTTATGGTCTAAAGAAATACAGAAAACACTACATTTGGAATGAAGACATA
AAAAATGATCAAAGAGTTTATCCAAGTAGGCGCTGGACCATCGTCCATCA
TGCCGCTTATTTCAAAGCACCTTTACCAATTGTCCAGAAGATGGCTATCG
ATCAATATCCTCTTTCATTACCAGACGGAGAAGGAAAGTTACCAATTGAT
CATTTGGATTCAGGCAcgccaaaaaatatcaaagcttTGTTTTCACCATC
TTACAAGATGAATTTCCTTCACTTGGAGATGAAATTGTTGCAGGCAAATT
TTCATGAAGTCATTCTGGAAAGAGTTGCTTCATTGGTTCAGAAGTATAAT
GTGATTTTACCAATCCTGTCAGTCCTTTTAGAAGACGTTTCAAAGGATAA
AGAAGTTTACTTCAATATGCCTGGAATGTATGGTGGATTCACATATTGGC
TTGAGTTTGATTCTTCTAAAACAGAAATTTTGGCATTGTATTCACGGAGT
TCTTCAAGGCTTGTTGGTAATTCAGAACAGCTACATAAGTGCACCAAAGA
AGGATGGACACTGGTCAAAAGTGACAAGTAaaagttttcctttttcttaa
tatttagTTTCTTTTTAGTTCCTAGActtattttaataaatttgatTATA
ATACATTTGCTTCATTTAAAAGTTACTTCATTACAAATTTCTTTGtgaga
aatcttttaaaagttatTATCTTATTGTGTCAAAGTTTaaatttatgtaa
aaacaattataaacaCTTAATATTTTATGCCTAATTTTTAATAAGTGACT
CTCCAAGCAAttttaagtacctgaaaatttAACCAGTTTTTGGGCAGTCT
TTTAAGGGACAATAGTAAATGATCTGTTGAAATTAAGACTGGCCTCTATC
AACTCTTAAGAATCTTTAAAGGAATTCGTTGTCAATGTCATTGTTAGTAA
AAGCATTTGGAATCCGTCCAAATCAGATTTTTGATGGTCCAAAGGCTGAC
CTGAAAAGTAATCGGATTTTGAATTTCCACTCTCAAGGTTTTGGACCTTT
ATTTATTCATGAAGGTAATACAGatacagatggagagaaaacgtctcggt
aatgacctaaatggtcgttgaaatcttttataaatctattcaaagcggct
tttctttgatgtaccatcattggaagcaaaaacatcaatttataacttcN
NAAGAGGCTGgtccgttgattttgaaaaatttaattttgcgagaaatctt
agttaaaatgcgattcgaaatagtttcaactgatttaaggataaaagaat
atattaattttataaggatatatttttgggctggcattttgtgaacattg
agagtcgcatcacattatcattgaaagtttcttatcttaaaatcttcacg
tctaagtgggcagcggttttcatactcttacaaaatgatcgatacaaggt
tcctaatcgtaacctgtcgtaacacgtaattctttttaaaatctatcgat
ggctttatgggtagcttcccctagaagtttggagtattgtgcttattatg
tgaagtttttttcaatttttcatgacgtAAGGCTATTataatatttcaat
atacttgttaaaaatgtaatgtcttttcattcatcttgaATATTCctacg
agtatacccaaaatttatcatcttattcccaaagcaaccaaacagctgtt
tgcttccgatgataaatcagaatagaacaaaaggcattgagtctccatct
atctttattaccttcatgattTATTTAAACCTAATTTAAACCTTATTTAG
ACCtaaatttatttgaaacaaaCTTGTTTGTTGCAAATAATTATTAATAa
cattttctttacttttatgcATAATTATTTACCgaaatttattttatcaa
tACCTTTTTGAAATGTAAAGAAATTAAAGATATGCTTTTTGTAACAAAAT
TGTGATTTCTTGTAAACgtaatttcattttcagtgtataaaactttgaaa
ttgctttcagtcaatcaaaagttttaattaccattgcaatgaaaaagaaa
tacaaaatattttttttttttatttacagaaGTGGTCTGACACTTTGGGA
CACCCTGTATGCATCTAATTTCTTAATATCTCTGAATCTTCTTCCAAAGA
ATTACCAACTATAATATTAAAATACTCAAAATGGCTCAATGGAAAGCCTT
AATTGAACCTGAAAAGGAAGTAATTGAGCGGGTTGTTAGTTTAACAAAAG
AATCTAGTGATGAAGAATGGAAAGATGTTGTTGAAGAAATGGCGCGCAGG
TATCTTTTCAAGCATTATCTTTGTAATTATGGAACAAATGAGGAGTCTCC
CTTCCCAAGCAAAATGTGGACCATCCAACATCATGCAGCTCACTTTAATG
CTCCTATTGAAATAATTGAATTCATGGTTGAAAAGCACTTTCCAATGTCT
TTCAAAGATGGCGAGGGCAAGACTCCAGCTGATCATCTTGATGTAAATGT
TGATTGCAATTATAAGGCATTGTTCATGCCTAGGTATGGcctttcaaatt
taaatttggagaatctgcaaaagattgaagaaaatttccatGCTGTGATT
AATGGAAGAGTCAAAGATTTGGTTGACAAGTATGACTTAATTCTCCCACA
GTTATCTGTTTCCCTAGAAGTTCAAGTAGCTATAGAATTTCTTGACAATG
GATATTGTGCTATCCCTGGGATGTATGGTGGTTTCACAATTGAATTCCAG
TTTAATGCAGATAAGAGTGATGTTGATCATCTCTTAACTAGCAGTTGGTG
TCGGATAGCAGGTGGCTCTGGTCAAACACACAAATGTACACCAGAACAGT
CAGAATTAATTGAATCAGGTTTTGCATAATGTTGAAGTTTAATATTCTTA
TAGGAATTTTTTATGCCTACTGTATTTTTAGATTATTCTCTTGTAGTAGT
TGAGTATTCAAATATAATAGCCATTCTTTTTCACTGTTCaacaaattaat
caaaaattttgagaaaggcaaatttttttctcagctaTTAAATTCATCAC
AAACAAATTAGCACAATATTTATACATTCATTAAAGAAAACCTGCTGCTG
TCATCGATTATCAGCTGATTTTGTACTTTAATCGAGTTTGTGATTGAGTT
TTTCTGACAAGTCTCACTCATACCattatttgaaatgttttaattttgag
actaaaaagtaattttaaacaaattttctcaaaccttattattttattat
tagcACAATGTAAAAGAACTGAATTATGATTTTTATACTGACTTTTTTTG
TAATCTAATTTACATATTATTTACATTTACACACTATTTATTATTTCTAA
AGTAATCACTATTTTAATATATCTCTGCCTTATTGTATTGTAAACGCATG
TAtaatcttttataaaaacaaaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008993-exon-sc0000089-1491911889:298712..299436 | TCONS_00008993-exon-sc0000089-1491911889:298712..299436 | Clytia hemisphaerica | exon |
TCONS_00008993-exon-sc0000089-1510915933:298712..299436 | TCONS_00008993-exon-sc0000089-1510915933:298712..299436 | Clytia hemisphaerica | exon |
TCONS_00008993-exon-sc0000089-1575043694:298712..299436 | TCONS_00008993-exon-sc0000089-1575043694:298712..299436 | Clytia hemisphaerica | exon |
TCONS_00008993-exon-sc0000089-1491911889:306950..307938 | TCONS_00008993-exon-sc0000089-1491911889:306950..307938 | Clytia hemisphaerica | exon |
TCONS_00008993-exon-sc0000089-1510915933:306950..307938 | TCONS_00008993-exon-sc0000089-1510915933:306950..307938 | Clytia hemisphaerica | exon |
TCONS_00008993-exon-sc0000089-1575043694:306950..307938 | TCONS_00008993-exon-sc0000089-1575043694:306950..307938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000089 | supercontig | sc0000089:298712..307938 + |
Blast
The following BLAST results are available for this feature:
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