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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008987 ID=TCONS_00008987|Name=TCONS_00008987|organism=Clytia hemisphaerica|type=transcript|length=1985bp
GGATCTAACAGTTGAAGTCACAAAGTAGTTTGACCTGTTCTGCTGTTAAA
AGATCGAATCTTAATCTGAAAATGGCGTCACCTAATGAAACAGAGGTGAT
TCCCTTGAATGAAAACAGCAAAGCTCTTGCAATGAAGGACAATGACATCG
AAAGTAAGCCAATATCAGGGCGCCAGTCACCAGCAGTTCGATCAGAAACT
GGTTCTGGCACCATCACTGATGATAGCAAAAACCTGAAGAGCTTAAAAGG
TTTAGATGATGTCAACATCTCCTCGCTAACTATACATGGATTACCAAGAG
CTATAGAAAGCACATCATGGATTGCCAGAATCTTTTGGATGATTCTGTTT
CTCATTGGGTTTGGATTCTTCGTCAAATTTGCTAATGTGGCAGTCACGCA
TTACCTACAACACGACATCTTCCAAAGAGTCACAATGAAAGCTTTGAAAC
GAATGCCTTTTCCAAGTGTCACGATTTGCAACATGCGTAAAGTGTACGGT
GAACTCAACGAGCGCCATTTCACCAAGAAACACAAGTCACCAAAGTCTGG
AGTCAACCACTACCTTCATCATCACCGTCGTATGCACAAAAATAACGTAG
actttgaagcattttcaaacGGTTATGAGAAACTTGTCAATCAAACCAAC
AGTAATTTCTGCCATTTCGGAAATCCATACAGAACTTGTGATACCGATCA
TTTCAAATCACTTAGTCTACTCCCAAAATGCATCACATTCAACCCTGAAG
GAAATGTCTTCCAAACGCAAAGCGGACGAAACTTTGGCTTACAAATGATG
TTGTTTTTCAATACAAGTAATGACATAGAAGTAAAAGCCGATCCTCATTT
CAGTGGAAATGACCAAGATGATATTGCAGTCTTGATCCACGAACCAGGCA
CATATCCCGACTTATCATACCGTCCAATCTTCCTTGAAACAGGCTCTCGT
ACAAATGTTGCTCTCCGAAAAAAGAAATCATCCCGATTACCTGCACCGGC
ACCAACCAAATGTGTGCACGGAATGCGCGAGACAAAATACAACATTTTTC
CAGGTAAATATATCCCATCCTTATGCAAAGATTCATGTCACCTCTACAAA
GCGTATTTAGAATGTGGCGATGTACCAGAATATTTCAGATTGATCCTCGG
TCCACGTGCTTTACCTGCTATCAACATGACTGGTAAAATTGATCAAGAAG
CATGCCTTAAAAAGCATCTTAAATATTACCAGTACCGTTTAACGGAATCG
TCTTGTGATTGTCCACCGTCCTGTGAATCGAGCTCTTATGAAACCTTGCT
AACATCAACTAGATGGCCTTCCAAAGTCAAAGTAAACTCTGTTCTACAAT
ACATGCAAGAATCATTCAATACAACCAATTTCAACACGACAGATTTAGAG
AATGACGTGGCGTACCTTTCAATCTTTTATGATGATTTCTTAATCAGTGT
CGAAGAGGAGGTTACGAAATACGATACCTTTAGCCTGATTTCTGATCTTG
GTGGACAGGCTGGATTGTACTTAGGAGCTTCGTTCTTTTCAATCGTTGAA
TTGGCCCTGGTTCTCTTTTTCTTCATCCTtgctgaaattaaaaaatacat
gagCGAAAGAATTCAAGAAGCAACTGCTTGATTCCTGGTGAATGACATTT
AGaatatatttgacatatttagaataatttttaaatatttaaagaaCCAT
TGGAACTTTATTTAATTTATCCATCGAAATGTTGGCATGACTTGTATGGC
AAAGGTTGTTACTTGGTATGGGTGTGGCTGGTAAATCACACCACCTTAAA
AATCTCACGATGAATTAAAGAGACAACGCAACAATACAGACAAAGATAAT
ATACAGTGAAGCATCTGGTCAAACGCAGTACTGACTTttataaaccaaaa
tatggaataaattgaaaaaaaataggaAAGATTAAAAAAGAGGCATTAAT
AGAATACGAATTCTGTTAGTCATGTTTATCGTGTA Run BLAST on NCBI transcript from alignment at sc0000089:285256..287334+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008987 ID=TCONS_00008987|Name=TCONS_00008987|organism=Clytia hemisphaerica|type=transcript|length=2079bp|location=Sequence derived from alignment at sc0000089:285256..287334+ (Clytia hemisphaerica)
GGATCTAACAGTTGAAGTCACAAAGTAGTTTGACCTGTTCTGCTGTTAAA
AGATCGAATCTTAATCTGAAAATGGCGTCACCTAATGAAACAGAGGTGAT
TCCCTTGAATGAAAACAGCAAAGCTCTTGCAATGAAGGACAATGACATCG
AAAGTAAGCCAATATCAGGGCGCCAGTCACCAGCAGTTCGATCAGAAACT
GGTTCTGGCACCATCACTGATGATAGCAAAAACCTGAAGAGCTTAAAAGG
TTTAGATGATGTCAACATCTCCTCGTTGACTATACATGGATNCTGGTTCT
GGCACCATCACTGATGATAGCAAAAACCTGAAGAGCTTAAAAGGTTTAGA
TGATGTCAACATCTCCTCGCTAACTATACATGGATTACCAAGAGCTATAG
AAAGCACATCATGGATTGCCAGAATCTTTTGGATGATTCTGTTTCTCATT
GGGTTTGGATTCTTCGTCAAATTTGCTAATGTGGCAGTCACGCATTACCT
ACAACACGACATCTTCCAAAGAGTCACAATGAAAGCTTTGAAACGAATGC
CTTTTCCAAGTGTCACGATTTGCAACATGCGTAAAGTGTACGGTGAACTC
AACGAGCGCCATTTCACCAAGAAACACAAGTCACCAAAGTCTGGAGTCAA
CCACTACCTTCATCATCACCGTCGTATGCACAAAAATAACGTAGactttg
aagcattttcaaacGGTTATGAGAAACTTGTCAATCAAACCAACAGTAAT
TTCTGCCATTTCGGAAATCCATACAGAACTTGTGATACCGATCATTTCAA
ATCACTTAGTCTACTCCCAAAATGCATCACATTCAACCCTGAAGGAAATG
TCTTCCAAACGCAAAGCGGACGAAACTTTGGCTTACAAATGATGTTGTTT
TTCAATACAAGTAATGACATAGAAGTAAAAGCCGATCCTCATTTCAGTGG
AAATGACCAAGATGATATTGCAGTCTTGATCCACGAACCAGGCACATATC
CCGACTTATCATACCGTCCAATCTTCCTTGAAACAGGCTCTCGTACAAAT
GTTGCTCTCCGAAAAAAGAAATCATCCCGATTACCTGCACCGGCACCAAC
CAAATGTGTGCACGGAATGCGCGAGACAAAATACAACATTTTTCCAGGTA
AATATATCCCATCCTTATGCAAAGATTCATGTCACCTCTACAAAGCGTAT
TTAGAATGTGGCGATGTACCAGAATATTTCAGATTGATCCTCGGTCCACG
TGCTTTACCTGCTATCAACATGACTGGTAAAATTGATCAAGAAGCATGCC
TTAAAAAGCATCTTAAATATTACCAGTACCGTTTAACGGAATCGTCTTGT
GATTGTCCACCGTCCTGTGAATCGAGCTCTTATGAAACCTTGCTAACATC
AACTAGATGGCCTTCCAAAGTCAAAGTAAACTCTGTTCTACAATACATGC
AAGAATCATTCAATACAACCAATTTCAACACGACAGATTTAGAGAATGAC
GTGGCGTACCTTTCAATCTTTTATGATGATTTCTTAATCAGTGTCGAAGA
GGAGGTTACGAAATACGATACCTTTAGCCTGATTTCTGATCTTGGTGGAC
AGGCTGGATTGTACTTAGGAGCTTCGTTCTTTTCAATCGTTGAATTGGCC
CTGGTTCTCTTTTTCTTCATCCTtgctgaaattaaaaaatacatgagCGA
AAGAATTCAAGAAGCAACTGCTTGATTCCTGGTGAATGACATTTAGaata
tatttgacatatttagaataatttttaaatatttaaagaaCCATTGGAAC
TTTATTTAATTTATCCATCGAAATGTTGGCATGACTTGTATGGCAAAGGT
TGTTACTTGGTATGGGTGTGGCTGGTAAATCACACCACCTTAAAAATCTC
ACGATGAATTAAAGAGACAACGCAACAATACAGACAAAGATAATATACAG
TGAAGCATCTGGTCAAACGCAGTACTGACTTttataaaccaaaatatgga
ataaattgaaaaaaaataggaAAGATTAAAAAAGAGGCATTAATAGAATA
CGAATTCTGTTAGTCATGTTTATCGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008987-exon-sc0000089-1491911889:285256..285521 | TCONS_00008987-exon-sc0000089-1491911889:285256..285521 | Clytia hemisphaerica | exon |
| TCONS_00008987-exon-sc0000089-1510915933:285256..285521 | TCONS_00008987-exon-sc0000089-1510915933:285256..285521 | Clytia hemisphaerica | exon |
| TCONS_00008987-exon-sc0000089-1575043694:285256..285521 | TCONS_00008987-exon-sc0000089-1575043694:285256..285521 | Clytia hemisphaerica | exon |
| TCONS_00008987-exon-sc0000089-1491911889:285616..287334 | TCONS_00008987-exon-sc0000089-1491911889:285616..287334 | Clytia hemisphaerica | exon |
| TCONS_00008987-exon-sc0000089-1510915933:285616..287334 | TCONS_00008987-exon-sc0000089-1510915933:285616..287334 | Clytia hemisphaerica | exon |
| TCONS_00008987-exon-sc0000089-1575043694:285616..287334 | TCONS_00008987-exon-sc0000089-1575043694:285616..287334 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:285256..287334 + |
Blast
The following BLAST results are available for this feature:
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