TCONS_00008985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008985
Unique NameTCONS_00008985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1840

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008985 ID=TCONS_00008985|Name=TCONS_00008985|organism=Clytia hemisphaerica|type=transcript|length=1840bp
GCCGCGCGAAATGTCCGAATGTATCCCGTGATGCAGTTGTATGATATTAA
AGAGGTAAAACTGCCAATCTTATCTCCTTTATATCGTAACCACGTCGCTC
TGCTTCGTCCACAAAGGAGGTCGGAAAACTTTGTATCGGTACTTGCACAT
GTCAGCTGCTGTCTCTGTCTAGGCTATCCCTCCAAGAAAACataTAAAAA
ATGGCTCCCGCAAAATTCGGTGACTTAGGAAAAGAAGCTAAAGATCTCAT
TAACAAAAACTTCCACTTTGGACTTATCAAATTTGAGGGAAAAACTAAGA
CAAAAAATGGAGTGGAATTCACTACCGAGGGAAGCCACTACACGGACACA
GGCAATGTCAATGGATCTTTAGAAACCAAATTTAAGAATGCTGATTATGG
TGTTACTTTCACAGAAAAATGGACCACCGAAAACATCATTTCAACAAACA
TTTCTATTGATGATAAAATTGCCAAAGGCTTGAAAGTTGACTTTGACACT
ACCTTTGCTCCAATCACTGGAAAGAAAACTGCCAAGGTCAAGACTGCTTA
CAAACACGAAAATGTACATGCTACCGGAGATGTCGACTTAAACTTTGCTG
GACCATCCATCAATGGATCAGCTGTCTTTGCTTACAAAGGTTGGCATGCA
GGTTACCAAGCCTCGTACGACACTGGATCAGCCAAACTCACCGCCAACAA
CGCCTCTTTGACTTACAAGGATGGTGACTTTGTCGTCCACTCTGCCATTA
ATGATGGTTCCAAATATGTCGGTTCAATCCACCATCAAGTCAAACCAGAG
CTATCTGCTGCCGCTATGTTGCAATGGGCTTCAGGATCTAAGGACCCCGC
TTCATTGACTGTTTGTGGAAGATACGATATCGACGGCGAAACCTTCATGA
AGgctAAATTGGACAATCAACTCCACCTTGGTATCTCATACGTTCAAAAC
CTCCGACCAGGAGTCCAACTTACTATGTCATCTCTCATCAACGCAAAATC
ACTCGAAAATGGTGGTCACAAACTCGGATTGAGCCTTAACCTTAGCGCCT
AAGTTTTTATATGACAGTAAAGCATTAGgttaaaaaattgtcattttctc
aggctaaaatgtCCAGCAGGTAGTTCAGTGACAGTGCTGCTCCTACTTTT
TGGACGTCAGTAGAATTAGAAAACAACGAAAAGGCTATAAAGTCAAGTCC
TTATTCGCACAACAAACATGTAAACGCGTgagaaatacttttttttcgat
ATATAAATTGTAAAAACACACTCATATGGTGGAATTATAATGTAGAAAAA
TAATAccgaaatttttttgtttcactttttaaGTTTCTATTGTTTCTATT
TGTGTACGTTAGTCCCCCAATCTTTTCGGGTctgacataattttttatta
aaatcagaaaatgaacttttaaccaaatattttattggtactctcgggta
cctaatagctgggggttggaataaaaatgtcctgggtggaaattttttga
aaaggaggctaatacagttgaattaggacaaaaaagggaactttcaaaaa
cattttcccaaaaattaataagcgggggggttggaataagaatgtcctgg
gtggaaaatttttgaaaaggatgctaatacagcagaattaggacaaaaaa
gggaactttcaaagacattttcccaaaaattaataaccgggggggttgga
ataagaatgtcctgggcggaaaattttcgaaaaattaattagcggggggg
ggggacggctattaagtacccgagagtaatagGTAACAATGTATTAAATC
TTGTCGTATTCTTCCTAACTATTTTCGTGACGAGTTCGTT
Run BLAST on NCBI

protein sequence of TCONS_00008985-protein

>TCONS_00008985-protein ID=TCONS_00008985-protein|Name=TCONS_00008985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MAPAKFGDLGKEAKDLINKNFHFGLIKFEGKTKTKNGVEFTTEGSHYTDT
GNVNGSLETKFKNADYGVTFTEKWTTENIISTNISIDDKIAKGLKVDFDT
TFAPITGKKTAKVKTAYKHENVHATGDVDLNFAGPSINGSAVFAYKGWHA
GYQASYDTGSAKLTANNASLTYKDGDFVVHSAINDGSKYVGSIHHQVKPE
LSAAAMLQWASGSKDPASLTVCGRYDIDGETFMKAKLDNQLHLGISYVQN
LRPGVQLTMSSLINAKSLENGGHKLGLSLNLSA
Run BLAST on NCBI

transcript from alignment at sc0000089:259194..270274+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008985 ID=TCONS_00008985|Name=TCONS_00008985|organism=Clytia hemisphaerica|type=transcript|length=11081bp|location=Sequence derived from alignment at sc0000089:259194..270274+ (Clytia hemisphaerica)
GCCGCGCGAAATGTCCGAATGTATCCCGTGATGCAGTTGTATGATATTAA
AGAGGTAAAACTGCCAATCTTATCTCCTTTATATCGTAACCACGTCGCTC
TGCTTCGTCCACAAAGGAGGTCGGAAAACTTTGTATCGGTACTTGCACAT
GTCAGCTGCTGTCTCTGTCTAGGCTATCCCTCCAAGAAAACGTAAGTTTG
ACAGTTGTTTTACTCTTTACTCTCTACATATTTCACACTGATCTGACGCA
AGAGTCTTTCTTCATTTCCAGATGTTCTTTTTAGCTTGAAAGCCTGCGCT
TTCTTCTTGAAAAGTCCATTAACTACCTCTGTTATTGACACACCTTATTT
TCTCTCCTTGCTGTTTTGACCAAAAAAATATGTTAGTTAAAGGATTCTGA
TATGGCAGATTAATTTAGAGGTTTTGCATTATTACCGACTAGCCTTCTGG
TTCATTCTAATTGCCTGGACTTACCTGGTTGAATTATGAGGTTAAATAAT
AGATAGATGCTCAGTTTGATGCTTGATGGTGAAAATTCTCACTCTCACAC
TGCACTGTACGTACACTGCTGTTAGCCAAGTCCAAAACTGTAATGACAGT
TTCCAAAACTGTAATGACAGTCTCATAATGACATGCCAATCTAAATAATA
TTGATTATGTTAGTTATGGCGGGCGATTTGCACTAAATCTGTACCGTCCC
gtccaaaatcattttttgcatATATCTCATTAAGGTTAGAGTCAAGTCAC
CAGTGCACGAACagccccagtgcacgaacgagcgtctttgaacttgaaaa
aaacaaccaaaaacaaacttctatagaactTCCTTTGTGCCAGCAAAATC
CTCAAACTATCCCTTAcaatctctccaaaaattaaaataaacggaGTACT
AGAACGAACACCAAACCGATTTTGAacgaggccaagtaaaaaaatcacaa
aaatcgggatttttgtaaacaCGGCTGATCgcgagagaaaatgtttttta
taagaaaattttcgcaagaagagttctgaaaatgactttcctcttttaaa
aacctgttatcttccatcacacaaaatttcattgaaacatgttagctcat
taattcaaaatcaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNttgatataaaaaaggttccAGTCTGCGAA
CGATCCgaacaccatattcaaaatgaagacattgcaacgtcaaaacattc
gaaagcgctggcgatatcaattgaaaatgaagacactacattgccgcgct
tttggatgagcaaaacttgaaaaagaaaacaaaaaaatggacgacaagaa
aatatttacaaaaataaacaggttagtaaaacgctaaagttcttataaaa
aagacgcttttttggtgaaaaagcgtgtggttttgaaaagttcaaatacc
cctgtatcatctcggaagagaattaaagtattacctgcgagcggagctct
aattttttctttcaaaagatcgtaCGCGCACTGGTTCCTTGTTTGCGGAC
TGGGTCCGAATAGTGCTCGCTTTAACGACTTATTATTCCGAGAAGAAGCc
ttcaaataaagtgaaaacaaactgtgaaagaaggacttcaagcttgttta
caagatggtcaaaaaggatttatgtaaaaaccaaaagtaagtcagaaaag
agaaaaataagtttaccgttcgtgcactgggcacCCCCCTCTAAgtgtta
atgatttttttcttttttcatcagaTACAACTTGGTAATGGTAcactttc
tgcaaaatttcatgttttaactGTCTATCATTAGTCTGCAATCATTAATT
TTGTGtcaatttttcctcgttttggcaatttttagtaaaaaaagttttat
ggtAGCACTTTCTTTCCAGGAAGGTATTTGACCTGGAATTTTGATTTTCC
ATATAGGTACTTNNNNNNNNNNNNNNaatttttcctcgttttggcaattt
ttagcaaaaaagtgctTCAGTTTTATGGTAGCACTTTCTTTCCAGGAAGG
TATTTGACCTGGAATTTTGATTTTCCATATAGGTACTTTATTCAtgtgtt
tttctacaaaaaaagtgttttgaaaccttttttccatCTTGCTCTAGCAG
TGATTTTCTGTTTACGTCCATTTTGACACAGAAAtgtgtcccgtccgaaa
tcattgcACATTGCCCCTATTTTAAGAGTGTTTATTGAAGATTTTTAAGA
TTGACAGTAAGCTCAATCTGTATGTGTTTGAAAACCTGtcaaaaagtatg
attttaCCATTAGGTTAACATTCTATAGGTCCCAGTGCATTGGTGATTGG
AAGTGACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTGg
taagaaaaatgttcaaacAGGCCAATTGAAGTAAGTTTTTATACCTTTAT
TTTAACCTTGAAAATAGGAattgatttcggacgggacaatTTTCCTATAA
AACTAGGTATTGTATTAAAACCACTACTGGAACAAAAAGAGTGGAAGATT
ATCAAGTATTTTCTATTTGGAATAGTAGTATATTTACTTGTATACTTACT
GATAATATgtagaaagaaaaagtttaacaaaacttgaaataaaacagatt
tttatgaaaatgatttcggaAGGGACCAGGAAAAATTTAGTACAAATCAC
CctgaaagtgaaaaaagatgaaaaaggtgATACAGATTTTTAAGATCTGT
TCTAATTTGAGGAAGGCCTTTATACAAACAATTTCAGGCTGTTCTACAGC
TTCCTTACTTCCTCAAtacatttttctgatgtattctagcatttagtttt
gcaaattttgtcgGTCCGAAATCATTTTCGATATCTACATGCCAATCAAA
AGAATGCAACAAAAAAAGGATTTCACCTAAGTTTAGTGATACTTAAATAT
CACCTGTTACAACCCTGATAATATGTGATACTCTCTACAGTGCaagttgg
ttttgattttttttaccacaaatttaccattttcataCGCTCTAACAGCT
CCATGAGCCCCTATAACTTTATTATTAGGCCTTAAAAGGTGGTGTCAAGG
TACATTTCCATGAAATATAGGCTATAGACTGTCATAGAAAAGTAGAGTTA
TgttaaaaaatgaactttatttttcatgatttcggacgggacacggTACA
GATTTAGCGCAAATCGCCCTTAAGAGCAGATGCCCCTCAAGGTTTGTGAT
AATGACATGCCAATCTAGATAATATTGATTATGTTAGTTATGGCACACTG
TAAGAGCAGATGCCCCCTCAAGGTTTGTGTTATGTTTTTTTCTAGcatga
ttacgtgatttggatattttttctttgtggTTGTTTGATCAGAGGTAAAA
AGTGAGGGATGTGATGCACGTTTATCCAAGTTTATTGCTGTTTTGCGTga
tcgtgatcgtgattgaagacaaaaaattgaatgATATTGTGTAATCAGAG
GACAGTTACTGCTTAGGAAGGAAGCCTACTGTAATGCCTTGGGACCTGAT
TGGATATCAATTGATTCTGATAATTGATAGGTAATCTAGCCCAGGCAGGG
CTTCCTTGGTATTTTAGAAGAAGAATGATGCTACAAGATTTGacgatatc
tttttattccatcaagcaattactttcaaacaaaaaatatattaacaatg
aatgggtaagctttctagaagtggcgtggtgggaaaatttctctggggtg
gccaaggcaattatggcgccctttttaaggattttttgtttttggcgccc
ctctctatatgctcattatgaacacaaaaaagggagtgtgcgagcgaagc
aagccagaaaattttgtggtgatgaggggcgccatttttgttttttattt
gtcaatctttcgatatgggcgcctgaaaaatccttcttggcgtcccttat
ttttgggcgccccaggccccccctgccaccacgccactgctTTCTAGAAt
agcttagctaagcgcacctctcttattcattacaTATCTATGAATAGGAC
TAtgaattgaagcgggcaaaaATTACTGCACAGGCTGATGGCAgacaaag
gtttttttaagatattttcagttatcatccaaggtagaacaaactaaaca
tagaaaggacacatttaaaggtattttttagtgctctgtACAATGATCGG
TATCTTTTTTGAATTCTTACTCTGTGTTTAGATTTTCTATCAAGCGCCGT
TGTTATGTATACATTTCCTGTTGATAAGTCCTTTGCTTgaaataaaacca
aaatatttggcacatcACTGTCGCGTGATAAAGTAAAAGGAAGCCTTGAC
TGATCTAGCACtcaaaatcttgagtatcaacAGGTATCAATCGATCTGAT
CAATTGATGAATAATAAATTACCTCAGAcgtgaaaagaaaattaaattta
gggCGAATTTAATTTGCCcggaacttttaaaatttggaaatccgccaaat
ccgccagaATTTCTTCCCTATGGTAATAATAACCTGCAATCCAGATCAAC
TGATCCAGATTTCTTGTGCTTCTTGTACCCCTTTAGTATAACTCATAGTA
TATTGGTAAAATCTATATAGACTATATATTATTATCTATCGATATCCAAT
CCATCGCATGGGAGAGTCTGGGTAATATGCTTGAAAGTagtttgtgaaaa
tttaattgactactttcagaaaatcaaatcagaatttgaaaatcataTCA
AAAGCTTCAACCCCTTTAGAGGGGTCCTcaacaaaactttcaaatttttt
attggcACTTGGCTGATAAACTTAAGACCTTTCAGAAATCACATTTTCTC
CAATCATGTTTGCCATTGCATTGATTTGTATTCACACTTGTCATCATTGA
GTTTTTGTCTATTTGCACCCATGAGTTTGTTTTTCATAAGCGtattgata
ttgttaatcaaaacaaaagttaaaataatGTGATGAACTCggaacatttt
gaaagaaaaggtaGTCTACTTGCCAATGAAAgaatagttttttttatcaa
agctaatACATacaaaactgtacttttaagTTGCAAATTTGTGCACGAAG
GCAAATGCAAGTGAAATTGCATGCTTTGAAATTGCATGCTTTCAGCAGAG
TTTATGGAAGAAATCAGGAAGAaattggaaaaagatttttttcttaataC
TGTTCAGTACATCAATTATTGGCAAGTTTCTGTAAGATGAAGCCatttca
tttttgcaattatgCTAATGTGGTGATTCAGGAAAGTTTTTGTGTATCCC
TGAAATtcattttgatataggggatgtgtATCATGTATACATTCGGGTCC
AAGGGCTACTTCAGATATGGAGTAATCTGtttcaattatctttttaaAAG
GTTCAGAAATCCAATTATTGTGTTAACCTCCAGCCATTGGAATTGACAGG
TTTTTCTAGTTTGAGTTGCTGACTTTTTAGACCTACCTctgaggtccttt
aaattaacctgtgtcctTCCTTCcgtctgattttttgcacaatgatgcaa
aatgtacaaaatgtgatgcCCGAtgttcgaaaaaattttcagccaaaGAT
GCTGtcaccagcttttctcgggattggctcattacttttttctgtttttt
ggcacaatgatgcaaaatgatgattcctaaaaagtgacggagcccaattt
tcgaaaaaactttttttccagccgaaaatgccagagatatgccggaaaaa
ctgttttttgggcattttctcgagattttatcgttagttttttctgattt
tttgctcaaagatgcatttaaaaatcgctggaacaacctattttcactgg
aaagacagtatttcttgaatttctcaagctgtactttatatttttttatg
aaattttgcacactgatgcaaaatgacaatacacgctttttcttttataa
gaataacttctataagaatatcagggtgagatttcgggtttaaaacaata
ggcctattgtttagaacaatagaaaaataagaataatgctcaccctcaac
caaagtacactattcttataaaaaaaaaagcgtgtacctaaaatgtgact
gagcccgatttgagaaaaattgccatttttgcagattttcattggatttt
ttccttatgttttatgttttttacacaaaaacattattatgttttttaca
caaaaacattattgataacaatgctcatcatcaagcatgattcaattgtc
aataaaactgatttttgcaaccagaactttctatttactttttccttaca
acatttccctctcccccatcaacaatcaataatgaatttattgcgttatg
cattttcgctaaacgctatattttctgactgatttttttcatttttctcc
tcgcattgctatctaactttcatcatcagataggtccattcagcatctag
cttgttttttggcattttctcaagaattcgtcatcagtttttttttaagt
tttttgcacaaagatgtaaaTTAGCAATGTCTAAGATAATATGTCCAAGT
CCAATATTGGAGAAAAATTTGATTATGCCAGAAATCattgtttttgcaga
ttttcattggactttttcctaatatttctttgtttttttcactcgaaaac
attattgataaccaccattaagcatgattcaatCACCATTCAATTTTAAT
CGTTTGAAGTGCCAGTAGAGGCAAAAATAGACCCCCAGCCTCTAATATCC
ACTTTGACTAGATATTGCAGCTTACGCCTTTGTTGAAAATTCAGTTTGAA
AGAACTGAGGAATCGCTTAGTGCTTTTGGAAAAACCCCTGTGACACCATC
TTTTCTGAAATAAACCTGCTCTTGGTACTGGCATATCGATACAACTAGTA
AAAATTCCTTGGTTTTGGACATAATCAATAGAATGTAAAACAAATAAGTA
ATCTGGAGTTCTTGCCCTGACCACTACTGTTTCTTGGTAAAGGCTTTAAT
GCCAAAAATCACCATCTTTTCCTTTTGAGTATGTTTTTGCTTGTCTGGGT
GATGACAACTTTTTTGGGTAAACATGAATTTGACGTTAATTTTTCAATGT
GTAACCACTggcttttcttttgtttagataTAAAAAATGGCTCCCGCAAA
ATTCGGTGACTTAGGAAAAGAAGCTAAAGATCTCATTAACAAAAACTTCC
ACTTTGGACTTATCAAATTTGAGGGAAAAACTAAGACAAAAAATGGAGTG
GTaagcttttttcattttgtttaaaCGCTCTGTGCTTTTCATTACTAATC
ATCCTGTCCTAATCAGACAGGGACCGAGGATACACTTTAGATACAATTCA
TTTACTTAAATTGCCTAGAACTATGTCAACCCTACTTTTTATAGCACatt
caagtcaaaaaaacagaaaatcgCCTATTTGTGTGTTTCTTGACGCGATT
CTTTTTCTCAAATGTCTTGATTAATTGGCTTGTTGCAAAGCTGGTTTTGG
GTATAAAGAAGAACTCTGAGAATTTAAGCAATTTCCTCTATGCCCTTTTT
CAGGAATTCACTACCGAGGGAAGCCACTACACGGACACAGGCAATGTCAA
TGGATCTTTAGAAACCAAATTTAAGAATGCTGATTATGGTGTTACTTTCA
CAGAAAAATGGACCACCGAAAACATCATTTCAACAAACATTTCTATTGAT
GATAAAATTGCCAAAGGCTTGAAAGTTGACTTTGACACTACCTTTGCTCC
AATCACTGGAAAGAAAACTGCCAAGGTCAAGACTGCTTACAAACACGAAA
ATGTACATGCTACCGGAGATGTCGACTTAAACTTTGCTGGACCATCCATC
AATGGATCAGCTGTCTTTGCTTACAAAGGTTGGCATGCAGGTTACCAAGC
CTCGTACGACACTGGATCAGCCAAACTCACCGCCAACAACGCCTCTTTGA
CTTACAAGGATGGTGACTTTGTCGTCCACTCTGCCATGTAAGCTTATATC
TAGACTTTGCATCCAATTGAATTATACTAGTAAGCTGCATGAATTGCAAG
TATCTCAACCTCCaccttttgaaatttctctatGCAAGCACAATGCACAG
AATCTTAAAATAGTAACAAATCTGCACACATTTATTCGTTTGTACGACTT
GCGATCCCATCCTCCTTTGTGTCAAATTGCAATCAAAAGAAAGGCAATAG
CTTTCACGGCTTTCCAATTATTTCGAAATGAACTGTTGGATTGGAACTGG
TACAAATTTCTAGTTGAAATAATTTTGACGTGTGAGGCGCGGAACGCTAT
TCTGTGATCTAACCCTGTAAAGTAAAACTGCTTTCCTTCAGGGGGGGGTC
gttagtaaaatctcagacataatgacgtttactacggtggtggtgtgacg
aaaaattgaaaagaaattttactacccagggtagttaaatactaaaatgg
gtggtatctatgtgttaaattttgaaatatttttactaccTAGGTAGtta
agtagtaagtaagtaagtctgcgacccgaaggctcctctttcgatagcta
tctacctgaaggtaggggagggcgccactctttctccctggattgctcca
attacccttgatccttctcttaattgctgagcatcaagcagagaggcatc
aagtaccattttggaaatatttggaatgacccggctgggggttgaaccca
caaccttgcgaaccgtagccggatgctctaccactgcactaggGTCGCTA
AAATTagctggtaaaattagcaaattttacctatttttgtaattctttta
attttttggatgacttttctgaaaaaatctgaaaatttttataaatttga
aaaaaaaatttgttggaaagttgtttgctgcaaacaaaaattctcgaaat
tttttgttaatataaaaaagattttaaattctaagggcaaaacttTAGAT
TCTGCAcgaagtgaaaaatgtgtcacagaaataatcattttttagctttt
tttgtgaaataagtccgaaaagcaaccaaaaaataagtggtctccatgac
aaattgtcccaaaaacttttactaccagggtagtaaaatacctcttccaa
gagtctgggtggtggtatgtaaaaattcgtaaaaatccttttactactca
tatatgtctgagattttactatcgACCACCCCCCCTGTTccctttcattt
ttcaaaataatttgtaCTTTACTCTCAAAATTCTTTTATTCACACAGTAA
TGATGGTTCCAAATATGTCGGTTCAATCCACCATCAAGTCAAACCAGAGC
TATCTGCTGCCGCTATGTTGCAATGGGCTTCAGGATCTAAGGACCCCGCT
TCATTGACTGTTTGTGGAAGATACGATATCGACGGCGAAACCTTCATGAA
GGTACGTAGAAATTGCATTACGGTTATGGGGATTTTTAAATTGTGAATTT
TGCCATTTTGATCAGAACGATGCTCTAGTATCTTAAAAAACATTGTTATG
AGACGTACTAATTCTTGATATTAGTATTtgtttcccactgtaaaaaatat
tttgtcattctttttgtTGCTCTTTCTGGCCCTTTACTTTATAAAGTTCC
TAGCTTTTATACTTAAATTATTCACAGCTCGTTCCACCAAACATCGTCCC
CGGCNTCACAGCTCGTTCCACCAAACATTGTTCCCGGCTTTCATTAAAAT
TCAccgattttcattaaaattcaccgatttttttattttccaggctAAAT
TGGACAATCAACTCCACCTTGGTATCTCATACGTTCAAAACCTCCGACCA
GGAGTCCAACTTACTATGTCATCTCTCATCAACGCAAAATCACTCGAAAA
TGGTGGTCACAAACTCGGATTGAGCCTTAACCTTAGCGCCTAAGTTTTTA
TATGACAGTAAAGCATTAGgttaaaaaattgtcattttctcaggctaaaa
tgtCCAGCAGGTAGTTCAGTGACAGTGCTGCTCCTACTTTTTGGACGTCA
GTAGAATTAGAAAACAACGAAAAGGCTATAAAGTCAAGTCCTTATTCGCA
CAACAAACATGTAAACGCGTgagaaatacttttttttcgatATATAAATT
GTAAAAACACACTCATATGGTGGAATTATAATGTAGAAAAATAATAccga
aatttttttgtttcactttttaaGTTTCTATTGTTTCTATTTGTGTACGT
TAGTCCCCCAATCTTTTCGGGTctgacataattttttattaaaatcagaa
aatgaacttttaaccaaatattttattggtactctcgggtacctaatagc
tgggggttggaataaaaatgtcctgggtggaaattttttgaaaaggaggc
taatacagttgaattaggacaaaaaagggaactttcaaaaacattttccc
aaaaattaataagcgggggggttggaataagaatgtcctgggtggaaaat
ttttgaaaaggatgctaatacagcagaattaggacaaaaaagggaacttt
caaagacattttcccaaaaattaataaccgggggggttggaataagaatg
tcctgggcggaaaattttcgaaaaattaattagcgggggggggggacggc
tattaagtacccgagagtaatagGTAACAATGTATTAAATCTTGTCGTAT
TCTTCCTAACTATTTTCGTGACGAGTTCGTT

Coding sequence (CDS) from alignment at sc0000089:259194..270274+

>TCONS_00008985 ID=TCONS_00008985|Name=TCONS_00008985|organism=Clytia hemisphaerica|type=CDS|length=3408bp|location=Sequence derived from alignment at sc0000089:259194..270274+ (Clytia hemisphaerica)
ATGGCTCCCGCAAAATTCGGTGACTTAGGAAAAGAAGCTAAAGATCTCAT
TAACAAAAACTTCCACTTTGGACTTATCAAATTTGAGGGAAAAACTAAGA
CAAAAAATGGAGTGGAATTCACTACCGAGGGAAGCCACTACACGGACACA
GGCAATGTCAATGGATCTTTAGAAACCAAATTTAAGAATGCTGATTATGG
TGTTACTTTCACAGAAAAATGGACCACCGAAAACATCATTTCAACAAACA
TTTCTATTGATGATAAAATTGCCAAAGGCTTGAAAGTTGACTTTGACACT
ACCTTTGCTCCAATCACTGGAAAGAAAACTGCCAAGGTCAAGACTGCTTA
CAAACACGAAAATGTACATGCTACCGGAGATGTCGACTTAAACTTTGCTG
GACCATCCATCAATGGATCAGCTGTCTTTGCTTACAAAGGTTGGCATGCA
GGTTACCAAGCCTCGTACGACACTGGATCAGCCAAACTCACCGCCAACAA
CGCCTCTTTGACTTACAAGGATGGTGACTTTGTCGTCCACTCTGCCATTA
ATGATGGTTCCAAATATGTCGGTTCAATCCACCATCAAGTCAAACCAGAG
CTATCTGCTGCCGCTATGTTGCAATGGGCTTCAGGATCTAAGGACCCCGC
TTCATTGACTGTTTGTGGAAGATACGATATCGACGGCGAAACCTTCATGA
AGgctAAATTGGACAATCAACTCCACCTTGGTATCTCATACGTTCAAAAC
CTCCGACCAGGAGTCCAACTTACTATGTCATCTCTCATCAACGCAAAATC
ACTCGAAAATGGTGGTCACAAACTCGGATTGAGCCTTAACCTTAGCGCCT
AAATGGCTCCCGCAAAATTCGGTGACTTAGGAAAAGAAGCTAAAGATCTC
ATTAACAAAAACTTCCACTTTGGACTTATCAAATTTGAGGGAAAAACTAA
GACAAAAAATGGAGTGGAATTCACTACCGAGGGAAGCCACTACACGGACA
CAGGCAATGTCAATGGATCTTTAGAAACCAAATTTAAGAATGCTGATTAT
GGTGTTACTTTCACAGAAAAATGGACCACCGAAAACATCATTTCAACAAA
CATTTCTATTGATGATAAAATTGCCAAAGGCTTGAAAGTTGACTTTGACA
CTACCTTTGCTCCAATCACTGGAAAGAAAACTGCCAAGGTCAAGACTGCT
TACAAACACGAAAATGTACATGCTACCGGAGATGTCGACTTAAACTTTGC
TGGACCATCCATCAATGGATCAGCTGTCTTTGCTTACAAAGGTTGGCATG
CAGGTTACCAAGCCTCGTACGACACTGGATCAGCCAAACTCACCGCCAAC
AACGCCTCTTTGACTTACAAGGATGGTGACTTTGTCGTCCACTCTGCCAT
TAATGATGGTTCCAAATATGTCGGTTCAATCCACCATCAAGTCAAACCAG
AGCTATCTGCTGCCGCTATGTTGCAATGGGCTTCAGGATCTAAGGACCCC
GCTTCATTGACTGTTTGTGGAAGATACGATATCGACGGCGAAACCTTCAT
GAAGgctAAATTGGACAATCAACTCCACCTTGGTATCTCATACGTTCAAA
ACCTCCGACCAGGAGTCCAACTTACTATGTCATCTCTCATCAACGCAAAA
TCACTCGAAAATGGTGGTCACAAACTCGGATTGAGCCTTAACCTTAGCGC
CTAAATGGCTCCCGCAAAATTCGGTGACTTAGGAAAAGAAGCTAAAGATC
TCATTAACAAAAACTTCCACTTTGGACTTATCAAATTTGAGGGAAAAACT
AAGACAAAAAATGGAGTGGAATTCACTACCGAGGGAAGCCACTACACGGA
CACAGGCAATGTCAATGGATCTTTAGAAACCAAATTTAAGAATGCTGATT
ATGGTGTTACTTTCACAGAAAAATGGACCACCGAAAACATCATTTCAACA
AACATTTCTATTGATGATAAAATTGCCAAAGGCTTGAAAGTTGACTTTGA
CACTACCTTTGCTCCAATCACTGGAAAGAAAACTGCCAAGGTCAAGACTG
CTTACAAACACGAAAATGTACATGCTACCGGAGATGTCGACTTAAACTTT
GCTGGACCATCCATCAATGGATCAGCTGTCTTTGCTTACAAAGGTTGGCA
TGCAGGTTACCAAGCCTCGTACGACACTGGATCAGCCAAACTCACCGCCA
ACAACGCCTCTTTGACTTACAAGGATGGTGACTTTGTCGTCCACTCTGCC
ATTAATGATGGTTCCAAATATGTCGGTTCAATCCACCATCAAGTCAAACC
AGAGCTATCTGCTGCCGCTATGTTGCAATGGGCTTCAGGATCTAAGGACC
CCGCTTCATTGACTGTTTGTGGAAGATACGATATCGACGGCGAAACCTTC
ATGAAGgctAAATTGGACAATCAACTCCACCTTGGTATCTCATACGTTCA
AAACCTCCGACCAGGAGTCCAACTTACTATGTCATCTCTCATCAACGCAA
AATCACTCGAAAATGGTGGTCACAAACTCGGATTGAGCCTTAACCTTAGC
GCCTAAATGGCTCCCGCAAAATTCGGTGACTTAGGAAAAGAAGCTAAAGA
TCTCATTAACAAAAACTTCCACTTTGGACTTATCAAATTTGAGGGAAAAA
CTAAGACAAAAAATGGAGTGGAATTCACTACCGAGGGAAGCCACTACACG
GACACAGGCAATGTCAATGGATCTTTAGAAACCAAATTTAAGAATGCTGA
TTATGGTGTTACTTTCACAGAAAAATGGACCACCGAAAACATCATTTCAA
CAAACATTTCTATTGATGATAAAATTGCCAAAGGCTTGAAAGTTGACTTT
GACACTACCTTTGCTCCAATCACTGGAAAGAAAACTGCCAAGGTCAAGAC
TGCTTACAAACACGAAAATGTACATGCTACCGGAGATGTCGACTTAAACT
TTGCTGGACCATCCATCAATGGATCAGCTGTCTTTGCTTACAAAGGTTGG
CATGCAGGTTACCAAGCCTCGTACGACACTGGATCAGCCAAACTCACCGC
CAACAACGCCTCTTTGACTTACAAGGATGGTGACTTTGTCGTCCACTCTG
CCATTAATGATGGTTCCAAATATGTCGGTTCAATCCACCATCAAGTCAAA
CCAGAGCTATCTGCTGCCGCTATGTTGCAATGGGCTTCAGGATCTAAGGA
CCCCGCTTCATTGACTGTTTGTGGAAGATACGATATCGACGGCGAAACCT
TCATGAAGgctAAATTGGACAATCAACTCCACCTTGGTATCTCATACGTT
CAAAACCTCCGACCAGGAGTCCAACTTACTATGTCATCTCTCATCAACGC
AAAATCACTCGAAAATGGTGGTCACAAACTCGGATTGAGCCTTAACCTTA
GCGCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005032XLOC_005032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008985-exon-sc0000089-1491911889:259194..259384TCONS_00008985-exon-sc0000089-1491911889:259194..259384Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1510915933:259194..259384TCONS_00008985-exon-sc0000089-1510915933:259194..259384Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1575043694:259194..259384TCONS_00008985-exon-sc0000089-1575043694:259194..259384Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1491911889:266721..266843TCONS_00008985-exon-sc0000089-1491911889:266721..266843Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1510915933:266721..266843TCONS_00008985-exon-sc0000089-1510915933:266721..266843Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1575043694:266721..266843TCONS_00008985-exon-sc0000089-1575043694:266721..266843Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1491911889:267147..267580TCONS_00008985-exon-sc0000089-1491911889:267147..267580Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1510915933:267147..267580TCONS_00008985-exon-sc0000089-1510915933:267147..267580Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1575043694:267147..267580TCONS_00008985-exon-sc0000089-1575043694:267147..267580Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1491911889:268841..268994TCONS_00008985-exon-sc0000089-1491911889:268841..268994Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1510915933:268841..268994TCONS_00008985-exon-sc0000089-1510915933:268841..268994Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1575043694:268841..268994TCONS_00008985-exon-sc0000089-1575043694:268841..268994Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1491911889:269337..270274TCONS_00008985-exon-sc0000089-1491911889:269337..270274Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1510915933:269337..270274TCONS_00008985-exon-sc0000089-1510915933:269337..270274Clytia hemisphaericaexon
TCONS_00008985-exon-sc0000089-1575043694:269337..270274TCONS_00008985-exon-sc0000089-1575043694:269337..270274Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008985-proteinTCONS_00008985-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:259194..270274 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1436.96	1477.36	1609.55	1652.46	1424.37	1149.58	1193.07	1271.89	1210.18	1178.57	1298.32	1419.71	1447.24	1521.26	1166.03	1177.75	1807.4	1985.83	1015.39	924.663	1696.86	1701.89	1491.44	1554.73	1680.3	1730.79	1212.64	1377.91	890.135	946.977
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001925Porin_Euk
IPR027246Porin_Euk/Tom40
Vocabulary: Molecular Function
TermDefinition
GO:0008308voltage-gated anion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0005741mitochondrial outer membrane
Vocabulary: Biological Process
TermDefinition
GO:0098656anion transmembrane transport
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098656 anion transmembrane transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005741 mitochondrial outer membrane
molecular_function GO:0008308 voltage-gated anion channel activity
Blast
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BLAST of TCONS_00008985 vs. Swiss-Prot (Human)
Match: VDAC2 (Voltage-dependent anion-selective channel protein 2 OS=Homo sapiens GN=VDAC2 PE=1 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 3.325e-88
Identity = 139/281 (49.47%), Postives = 204/281 (72.60%), Query Frame = 3 
Query:  207 PAKFGDLGKEAKDLINKNFHFGLIKFEGKTKTKNGVEFTTEGSHYTDTGNVNGSLETKFKNADYGVTFTEKWTXXXXXXXXXXXXXXXAKGLKVDFDTTFAPITGKKTAKVKTAYKHENVHATGDVDLNFAGPSINGSAVFAYKGWHAGYQASYDTGSAKLTANNASLTYKDGDFVVHSAINDGSKYVGSIHHQVKPELSAAAMLQWASGSKDPASLTVCGRYDIDGETFMKAKLDNQLHLGISYVQNLRPGVQLTMSSLINAKSLENGGHKLGLSLNLSA 1049
            P  + DLGK A+D+ NK F FGL+K + KTK+ +GVEF+T GS  TDTG V G+LETK+K  +YG+TFTEKW T+N + T I+I+D+I +GLK+ FDTTF+P TGKK+ K+K++YK E ++   DVD +FAGP+I+GSAVF Y+GW AGYQ ++D+  +KLT NN ++ Y+ GDF +H+ +NDG+++ GSI+ +V  +L  +  L W SG+ +     +  +Y +D    + AK++N   +G+ Y Q LRPGV+LT+S+L++ KS+  GGHK+GL+L L A
Sbjct:   15 PPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGT-NCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 294
The following BLAST results are available for this feature:
BLAST of TCONS_00008985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VDAC23.325e-8849.47Voltage-dependent anion-selective channel protein ... [more]
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