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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008984 ID=TCONS_00008984|Name=TCONS_00008984|organism=Clytia hemisphaerica|type=transcript|length=2680bpRun BLAST on NCBI protein sequence of TCONS_00008984-protein >TCONS_00008984-protein ID=TCONS_00008984-protein|Name=TCONS_00008984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp MLRTTQSLSKLGKASKEALKAFTPACSRLSTSSSQCSTAEPDGEPEFLEMRun BLAST on NCBI transcript from alignment at sc0000089:246278..257485+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008984 ID=TCONS_00008984|Name=TCONS_00008984|organism=Clytia hemisphaerica|type=transcript|length=11208bp|location=Sequence derived from alignment at sc0000089:246278..257485+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000089:246278..257485+ >TCONS_00008984 ID=TCONS_00008984|Name=TCONS_00008984|organism=Clytia hemisphaerica|type=CDS|length=14607bp|location=Sequence derived from alignment at sc0000089:246278..257485+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008984 vs. Swiss-Prot (Human)
Match: DHE4 (Glutamate dehydrogenase 2, mitochondrial OS=Homo sapiens GN=GLUD2 PE=1 SV=2) HSP 1 Score: 690.649 bits (1781), Expect = 0.000e+0 Identity = 335/538 (62.27%), Postives = 414/538 (76.95%), Query Frame = 3
Query: 441 QSLSKLGKASKEALKAFTPAXXXXXXXXXXXXXAEPDGEPEFLEMVKDFADNAHSLALDKLLSAKPQPGKRAEEAAVREKHIRGILDIIKPTNTALSVTFPIRRDNGEIELVRGYRAQHSHHRLPTKGGIRYAMDVNMDEVQALAMLMTFKCAVVDVPFGGAKGGIRINKGDYSENEVEKITRRFTVELARKGFIGPGIDVPAPDMGTGEKEMAWMADTFAMTHGYGDINASGCVTGKPISQGGIHGRTAATGRGVYHGIDNFIKDEYYASLVGLTPGLEGKNFIVQGFGNVGLHTCRYLHRFGAKCIGVIEWDGSIYNADGIDPKDLEDYKLENGTIRGFPGAQDTTEDLMIAECDILIPAANERQITKKNAHLIQAKIIAEGANGPTTPAADKILQERKRLVIPDLYINAGGVTVSYFEWLKNLNHVSYGRLTWKYEEESNLNLLDSVQQSLQTKFNDD---IPITASPAFQDKIKGASEKDIVHSGLAFTMERSAKRIMATAQAYELGLDVRSAAYVVALEKIYNTYSEAGLTFS 2045
S + LG+ + A P + + A+ + +P F +MV+ F D S+ DKL+ K + +EE + +RGIL IIKP N LS++FPIRRD+G E++ GYRAQHS HR P KGGIRY+ DV++DEV+ALA LMT+KCAVVDVPFGGAK G++IN +Y+ENE+EKITRRFT+ELA+KGFIGPG+DVPAPDM TGE+EM+W+ADT+A T G+ DINA CVTGKPISQGGIHGR +ATGRGV+HGI+NFI + Y S++G+TPG K F+VQGFGNVGLH+ RYLHRFGAKCI V E DGSI+N DGIDPK+LED+KL++G+I GFP A+ ++ +CDILIPAA E+Q+TK NA ++AKIIAEGANGPTTP ADKI ER LVIPDLY+NAGGVTVSYFEWLKNLNHVSYGRLT+KYE +SN +LL SVQ+SL+ KF IPI + FQD I GASEKDIVHS LA+TMERSA++IM TA Y LGLD+R+AAYV A+EK++ YSEAG+TF+
Sbjct: 25 HSAALLGRGRGQPAAASQPGLALAARRHYSELVADREDDPNFFKMVEGFFDRGASIVEDKLV--KDLRTQESEEQ--KRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYEGSILEVDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNILVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLLSVQESLERKFGKHGGTIPIVPTAEFQDSISGASEKDIVHSALAYTMERSARQIMHTAMKYNLGLDLRTAAYVNAIEKVFKVYSEAGVTFT 558 The following BLAST results are available for this feature:
BLAST of TCONS_00008984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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