TCONS_00008963 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008963
Unique Name	TCONS_00008963
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1727

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000089:145263..150385+

transcript sequence

>TCONS_00008963 ID=TCONS_00008963|Name=TCONS_00008963|organism=Clytia hemisphaerica|type=transcript|length=1727bp
GGACTCTTTAAGGTAGTTAGAAAAGATTGTTAAAGTAAAGAAATGTCTGG
TTTTATTACCATGGAAAATGAAGATACATCAAGCGATTCTGGGAGTGATT
CTGAAACTGGATTGAAATTAGCACTGGATAAACAGAGAAGCAATACCCAA
GAAAGATTAGATAACTATGTTgcTGCAACGCCAGCTGAATTTGTTTCCAA
ATTTGGTGGAACTCATGTCATTGAAAAGGTGCTTGTTGCAAATAATGGTA
TTGCTGCAGTCAAATGCATCAGATCTATGAGACAATGGGCTTATGACATG
TTTGGAAATGACAAAGCAGTGAAATTTGTTGCAATGGTCACCCCTGAGGA
TTTAAAGgcaAATGCTGAATATGTTAAAATGGCTGATCATTTTGTGACTG
TTCCTGGTGGCACCAACAATAATAACTACGCTAATGTTGAATTGATTTTG
GATATTGCCAGAAGAACTGCTGTACAAGCTGTATGGGCAGGCTGGGGCCA
TGCATCAGAAAACCCTAAACTACCAGAACTTCTGTCCAAAAATGGAATTG
CATTCATAGgACCCACTTCACATTCTATGTGGGCATTGGGAGACAAAGTT
GCATCTTCCATCATAGCACAATCTATTGATATTCCAACCTTACCTTGGTC
AGGCAATGGAATCACACTGGACATTGACAAGGATTCAAAACCGGGTGAGG
GGAACTATGTTAGTGTCCCAATGGAAAAATTCCAAGAAGCCTGTGTGACT
GATGTTATGAAAGGTCTTGTGATTGCACACGAGATTGGATATCCTGTGAT
GATCAAAGCATCAGAAGGAGGAGGTGGTAAAGGCATCAGGAAATGTAACA
ATGATGAAGAATTTTCCAATGGATTTAGACAGGTTGAAACTGAAGTACCT
GGATCACCTATCTTTATCATGAAATGTATGCAAAGAGCAAGACATTTGGA
AGTCCAGTTGCTAGCTGACCAATATGGGGAAGCTATTTCTCTGTTTGGAA
GAGATTGTTCAGTTCAaagacgtcatcaaaaaatcatTGAGGAAGGTCCA
GTCACTGTCTGTAAAGGAGAAACCCTTGTCAAAATGGAAAAGAATGCTGT
GAACTTGGCTAAACTTGTTGGATATGTCAGCGCTGGAACCGTAGAGTATT
TATATGATTGCATCTCCAAAGAAGTGTACTTCCTTGAACTCAATCCACGT
CTCCAAGTGGAACATCCTTGCACAGAAATGATCACTAACATCAACTTGGC
TGCTTGCCAATTACAAATTGCAATGGGTATTCCGCTACATAGAATCAAAG
ATATCAGGCTTCTCTATGGAGAATCACCTTGGTCTGCCGCACCCATTAGC
TTTACTGATTACTACGGGAAGTTGAAACCAAAAGGGCATGTTATTGCTTG
CAGAATCACGGCAGAAAACCCAGATGAGGGTTTCAAGCCGAGTAGTGGAA
CAATCAAAGAATTGAGTTATCGAAGCAATGCTCATTGTTGGGGATATTTC
AGTGTAACAGCTGATGGAAGTCTTCATGAGTATGCAGATTCACAATTCGG
TCACTTGTTTGCTGGTGGTGAAAACCGAGAAGCTGCTAGAAAGAACATGG
TCGTTGCTTTGAAAGAGTTGTCGATTCGTGGAGACTTTCGAACCACTGTT
GAATATCTTGTTCGATTGTTGGAAGATGAATCTTTCAAAAGAAACACCAT
CGATACTGCCTGGCTTGATAGTTTGAT

Run BLAST on NCBI

transcript from alignment at sc0000089:145263..150385+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008963 ID=TCONS_00008963|Name=TCONS_00008963|organism=Clytia hemisphaerica|type=transcript|length=5123bp|location=Sequence derived from alignment at sc0000089:145263..150385+ (Clytia hemisphaerica)
GGACTCTTTAAGGTAGTTAGAAAAGATTGTTAAAGTAAAGAAATGTCTGG
TTTTATTACCATGGAAAATGAAGATACATCAAGCGATTCTGGGAGTGATT
CTGAAACTGGATTGAAATTAGCACTGGATAAACAGAGAAGCAATACCCAA
GAAAGATTAGATAACTATGTTGTAAGTGATTTTGTTCAATAAATCTTTCA
ATTTCTGTTAAGAAGAGTCTTGCTCAGTGACAAAATTCCGTTTTGAAAAG
CCTAGTCTTTATAATTAATTCCTTGTGAATAATTTTGCCTTTAATTTGAA
GAGAAAtgataaaagattttaaatttttaggcTGCAACGCCAGCTGAATT
TGTTTCCAAATTTGGTGGAACTCATGTCATTGAAAAGGTGCTTGTTGCAA
ATAATGGTATTGCTGCAGTCAAATGCATCAGATCTATGAGACAATGGGCT
TATGACATGTTTGGAAATGACAAAGCAGTGAAATTTGTTGCAATGGTCAC
CCCTGAGGATTTAAAGGTAAGAATATGCTTTGATAATAATAATCATCTGA
CCACATCTGCAAGATTTACATAAGATTTTCCTTTACATATTGTAATGAAA
GGAATAAAGTTGTTCTGGTGGTGTTGTCTTTGGACTAGCAACCTGAATGG
TTGGAAAAACCAACAAACTCAGTAGGAGAGCAAAGTGTTGCTCTGCAATA
GTGCTATCTCCATGTGAAANGattaaagtctttttatattgacaaagaat
ttcgagaattttttgtttgcagcaaacaactttccaacagaaaatctttt
caaattataaaaattttcagattttttcagaaaagtcatccagaAAATTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcacatagataccacccattttagt
atttaactcccctgggtagtaaaattttttttcgatttttcgtcacacca
ccaccgtagtaaacgtcattatgtctgagattttactaccgacccccccc
ctgcaTTCTATTGagccaaaataatttttgtctaTAACCAACCAGAAGTA
ATTTTTGTCTATAACCAGCCAGAAACATTGGATTAGGAATATGCTGTCTC
CATTCTGAAATACAGAATTCTAGAAGAAGATTTTGTCTtctaaatcttta
aaatctgtAGGTAGGTTAATgaccatttttttcatttcaggcaAATGCTG
AATATGTTAAAATGGCTGATCATTTTGTGACTGTTCCTGGTGGCACCAAC
AATAATAACTACGCTAATGTTGAATTGATTTTGGATATTGCCAGAAGAAC
TGCTGTACAAGCTGTATGGGCAGGCTGGGGCCATGCATCAGAAAACCCTA
AACTACCAGAACTTCTGTCCAAAAATGGAATTGCATTCATAGGTAAGTTT
CGACATTTCTAATGATTATATCttacattttgcaatttttttgttgtttt
tttgttcttcTTGTAAAACCTTTTGTACTTCTTTTAGTGACTTAAAGTTA
TTTTATTCTGATTGCCTTTCTATCCAAAACAAAACAGGATGGTTTCAACC
CAGTTTTCAGGATGCTCTCATTGATTTAGGTCCCCTTAGGAATTAGCTTT
GAGCTAGGTGTTCCCATTTACTTCTTTTGGatttacatttttgttttgga
gtAGGATATTGAATTGACCAAGACTGATGGGACAAATTGAAgcaattaat
ttatttttttcgttctGAAGAAATCAATTGTATTATTAACAAAAATTTTA
GCAAAAGTACAGATAAACAGCTGACAAAGTCTCTATTAAAAAAATAGATT
CCAAGACTTAAGAAATCTAAAAGGAACTGACgcagattttgattttgagt
agTCCCTAACTGGGATAGGCATGTAatagtttttgagttttgaatTGGGG
ATGAAACAGACCTGCTCTGCCATCTTTTACATGCTCTTTGTGTGAAAATA
GATGTACATTCAGGTACATTTATTCAAATGATAAGGATTGATAAAAAGGA
TCtagaaattaaaacatttttatttgtctTAGAGTAAGATTTATCCATTA
TAAAAGCTAAAGATAACATGAAAATTATTTGACTATGTAATTATAAAAGA
TTTGCCAAACTTCACTAGAAATCTTTATACTATAGtcctaaattttgaaa
ctttttttttgtaggACCCACTTCACATTCTATGTGGGCATTGGGAGACA
AAGTTGCATCTTCCATCATAGCACAATCTATTGATATTCCAACCTTACCT
TGGTCAGGCAATGGTAAGTTGGCTTTTCACTGTGTAGTAATTTCTACCCA
AGTGAAAGACTTCATGAATTATATTATCAGAACTTTAAATTCTATCTCAT
AACACGAGGGCTTTAAAAGACAATACGCGCCTGCAATGTCACTTCTGTCA
ATAAGAAAAAATCCCTTGATGATCCTTTCATACatgtcatttttttaatt
tgatttaagGAATCACACTGGACATTGACAAGGATTCAAAACCGGGTGAG
GGGAACTATGTTAGTGTCCCAATGGAAAAATTCCAAGAAGCCTGTGTGAC
TGATGTTATGAAAGGTCTTGTGGTAAGTTCATAATTGTTTTTTCTGTTCT
AATGTATGAAAGTGAtgaatttgattttattaataAAGCTAGGGTCATAA
TTCAGTTTTCCTTTAAGATGTTAATACTAGAGCTGTACAGTGAAACATCC
GAAAACCCCATATAGTTTTACAACTTTTGACAAGCTTTCAATTGTTTTAA
AAGTCTTGATTAGGAAAATGTGTCCCAAAATTTGTAAAGCATTCGTAATA
GATAGATCATtcgccatttttcttttctctaaAGATTGCACACGAGATTG
GATATCCTGTGATGATCAAAGCATCAGAAGGAGGAGGTGGTAAAGGCATC
AGGAAATGTAACAATGATGAAGAATTTTCCAATGGATTTAGACAGGTCTG
TTCAACTCTTGAAATTCTAAACTTCATCAAGTTGtagatttcatttaaaa
aattcttatgTCAATTTCATTTATCATCTCATATTCAAGACATGAAATCA
gacaattttgtaatttttgtttttgttttctcagGTTGAAACTGAAGTAC
CTGGATCACCTATCTTTATCATGAAATGTATGCAAAGGTAAATAGATCTA
ACCAGAATGGTATAAAATTACTGAAACTGACACAAAATGTACAAATAGGT
TCAAACAATTTAAGAGGGTGCTGACTTTGAAaccttttaagatttttcac
attccttaaaattttcctaaaaagcCATTATGTTTAATTGTTCCAATTAc
ccaaattagaaaaaaattattttttcgatatGCTGATGAAATAttaaatt
aatttgatttttactttCAGAGCAAGACATTTGGAAGTCCAGTTGCTAGC
TGACCAATATGGGGAAGCTATTTCTCTGTTTGGAAGAGATTGTTCAGTTC
AaagacgtcatcaaaaaatcatTGAGGAAGGTCCAGTCACTGTCTGTAAA
GGAGAAACCCTTGTCAAAATGGAAAAGGTACAATACAGTGACTTTTGAAA
CATTCTAGCTTGCTAAAAATATGTAGTAATTATGTCCAAAACACAGGAGT
ACGTCTTTTTTTAACTAAATATGTTCCATATAAACTTGACTATGAAAACA
TcagaattttattaaattgcATGAAGAACCCTTTTAAATTTCTAACCTTT
TCATCTTTAATTAAAGAATGCTGTGAACTTGGCTAAACTTGTTGGATATG
TCAGCGCTGGAACCGTAGAGTATTTATATGATTGCATCTCCAAAGAAGTG
TACTTCCTTGAACTCAATCCACGTCTCCAAGTGGAACATCCTTGCACAGA
AATGATCACTAACATCAACTTGGCTGCTTGCCAATTACAAGTAAATTTAT
TCAGTACTTTTCTATGGTGaacaataaaaaacatttattcGTTGTAAAAA
AACAGCATTTTTTAATACATGGttattttttgataaagtttGACCTTTAA
ATTCACCTTGACTCTTTCTTTAGATTGCAATGGGTATTCCGCTACATAGA
ATCAAAGATATCAGGCTTCTCTATGGAGAATCACCTTGGTCTGCCGCACC
CATTAGCTTTACTGAGTAAGTTataattctgtttgtttttagGAATGCTT
CTGATACCTTAGTTGTTGTTTGTTTGTCGGCTACTGGTTAGTAGTCCAGA
GTAATTTATGgaatgatttctttttatttgatcaGTTACTACGGGAAGTT
GAAACCAAAAGGGCATGTTATTGCTTGCAGAATCACGGCAGAAAACCCAG
ATGAGGTATTGTTTTATGTTACAGTTGGCAATCAAGGCTTAAACTTTCCT
AATGCTAAAGAGAAGAGCTGTTCCTTCCAATCTGATAAGAATAATATTGT
ATTTCATGCGAAATCACTTCGGTAAAAGACTTTCTATCAATGCTTCTATC
ACTTACTCAGGGTTTCAAGCCGAGTAGTGGAACAATCAAAGAATTGAGTT
ATCGAAGCAATGCTCATTGTTGGGGATATTTCAGTGTAACAGCTGATGGA
AGTCTTCATGAGTATGCAGATTCACAATTCGGTCACTTGTTTGCTGGTGG
TGAAAACCGAGAAGCTGCTAGAAAGTAAGCTTTCGTTGCAAATCAAAATT
TCTCGAAATGCACAACTGCTGTGAAATCAATTTTAGGAGCAATATCGCAT
GTCTAATTTTTCCTACTGCAGTCAACCATGTCATAAACAGTGGTTTCctt
gttttcaaaattcaaaatttactgTTCAAAATAATTAGGAACATGGTCGT
TGCTTTGAAAGAGTTGTCGATTCGTGGAGACTTTCGAACCACTGTTGAAT
ATCTTGTTCGATTGTTGGAAGATGAATCTTTCAAAAGAAACACCATCGAT
ACTGCCTGGCTTGATAGTTTGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005028	XLOC_005028	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000089	supercontig	sc0000089:145263..150385 +

Expression

No biomaterial libraries express this feature.

Blast

[Close]

BLAST of TCONS_00008963 vs. Swiss-Prot (Human)
Match: ACACA (Acetyl-CoA carboxylase 1 OS=Homo sapiens GN=ACACA PE=1 SV=2)

HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 366/538 (68.03%), Postives = 437/538 (81.23%), Query Frame = 1

Query:  112 LKLALDKQRSNTQERLDNYVAATPAEFVSKFGGTHVIEKVLVANNGIAAVKCIRSMRQWAYDMFGNDKAVKFVAMVTPEDLKANAEYVKMADHFVTVPGGTNNNNYANVELILDIARRTAVQAVWAGWGHASENPKLPELLSKNGIAFIGPTSHSMWALGDKVASSIIAQSIDIPTLPWSGNGITLDIDKDSKPGEGNYVSVPMEKFQEACVTDVMKGLVIAHEIGYPVMIKASEGGGGKGIRKCNNDEEFSNGFRQVETEVPGSPIFIMKCMQRARHLEVQLLADQYGEAISLFGRDCSVQRRHQKIIEEGPVTVCKGETLVKMEKNAVNLAKLVGYVSAGTVEYLYDCISKEVYFLELNPRLQVEHPCTEMITNINLAACQLQIAMGIPLHRIKDIRLLYGESPWSAAPISFTDYYGKLKPKGHVIACRITAENPDEGFKPSSGTIKELSYRSNAHCWGYFSVTADGSLHEYADSQFGHLFAGGENREAARKNMVVALKELSIRGDFRTTVEYLVRLLEDESFKRNTIDTAWLDSL 1725
            +K   D+++ ++Q    ++  A+PAEFV++FGG  VIEKVL+ANNGIAAVKC+RS+R+W+Y+MF N++A++FV MVTPEDLKANAEY+KMADH+V VPGG NNNNYANVELILDIA+R  VQAVWAGWGHASENPKLPELL KNGIAF+GP S +MWALGDK+ASSI+AQ+  IPTLPWSG+G+ +D  ++        ++VP E +++  V DV  GL  A E+GYPVMIKASEGGGGKGIRK NN ++F N FRQV+ EVPGSPIF+M+  +++RHLEVQ+LADQYG AISLFGRDCSVQRRHQKIIEE P T+        ME+ AV LAK+VGYVSAGTVEYLY       YFLELNPRLQVEHPCTEM+ ++NL A QLQIAMGIPL+RIKDIR++YG SPW  +PI F D      P+GHVIA RIT+ENPDEGFKPSSGT++EL++RSN + WGYFSV A G LHE+ADSQFGH F+ GENRE A  NMVVALKELSIRGDFRTTVEYL++LLE ESF+ N IDT WLD L
Sbjct:   85 VKQGRDRKKIDSQR---DFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQEND--FSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQ-DGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWGDSPIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESFQMNRIDTGWLDRL 616

The following BLAST results are available for this feature:

BLAST of TCONS_00008963 vs. Swiss-Prot (Human)

BLAST of TCONS_00008963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACACA	0.000e+0	68.03	Acetyl-CoA carboxylase 1 OS=Homo sapiens GN=ACACA ...	[more]

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TCONS_00008963 (transcript) - C. hemisphaerica