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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008953 ID=TCONS_00008953|Name=TCONS_00008953|organism=Clytia hemisphaerica|type=transcript|length=1279bp
tttagtttcaaaaaGTACCAAAGAGATTAATCACAAAATACGAAAAGGAA
AATCACAATAAGTCATTGATGGTAAGCCATGgccgattatgacgtcatta
aaaaagcGGTGGTCGGCAGTGTTGCCATAATTGGAGGAACCTCTTTACTG
ACTGCTGGTTTAGCAACTGCGCCGATTACTGGTTCTGTGGGTTTAATGGC
GTTTGGGTATACATCTATTGGTGCCATTTGGGGAGGAGCTGTAGGAGgtt
ttgccaTGTGGTTATTTGACGATGGCCAAGGACAGCAAGTTGCTCAACAA
GAAGACCATCAACCACACCAGCAAATTCATTTGCATCAAACAAACATCCA
TTATCACCAAGTCAACCACTATCACGTCAGAGAAAGAAGATGATTCGTTG
AGAGAATATCTCTAAAAGACAATAAATTTGCACCTATATGTACATACATA
TCCTCTTGTGTAACTTCTAGTAGGGGGGCAACCTTTAAAATCGGTAGCAT
CTTTCGTGAGACGCAACTGTATGTAATTGATTCGAAAGTAGATAGGACTT
tgagacttttttgagagggggccCGCCAAATACGCCTGGTTTAATTGTCA
AAAAACTAACGTTATAGGCAAAACTCCTAATTCCAAAATATGAGTAAGAA
gttgacatttttttaaagttgaattaaacgaaaatgattgatacCATCGA
ATAAAACATCTTTTTTTCTATACTAAAtgaatttcatattttgtgTCCGT
CACGCATGATGGCAGCAAAGCTGCGAAAGTTTGTCGAGTATTGTCGTCAT
TGTTTACTAGCTAATTTTATTGTGAAGATTTCAAGTCATATTCTCACATT
CaatttgaagcataaaaagGTATTCACAAGAAATCTTTTGATGTACTCCG
AAAACTAATtcaaattttccttcaaaataaagttagagagcatcaacaat
ACGACCTTTATCATCGTAAGGGCTTTTGGTGCAcaagctaaaccggcgtt
tgcaacgacgggaaccgtctaatctaccgggtgacccacgaaaaagttcg
gacagtTTTCGGCGTCTCGAGGCCGAAGAAATGTctcaaagtgcttgaaa
ttttcatatgtagaaagtagatattctaacttaaagtttgagctattatt
ttttaaatttgacccacAAGTtccctacttatgagcttttaaagtcaaaa
ttaacTTTTCGGAATGAgcgaaattacgtcaaaaaagaggtatcaaattg
ttttattatcaatcaatcaagtaAGGTCG Run BLAST on NCBI protein sequence of TCONS_00008953-protein >TCONS_00008953-protein ID=TCONS_00008953-protein|Name=TCONS_00008953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MADYDVIKKAVVGSVAIIGGTSLLTAGLATAPITGSVGLMAFGYTSIGAI
WGGAVGGFAMWLFDDGQGQQVAQQEDHQPHQQIHLHQTNIHYHQVNHYHV
RERR Run BLAST on NCBI transcript from alignment at sc0000089:125340..127531+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008953 ID=TCONS_00008953|Name=TCONS_00008953|organism=Clytia hemisphaerica|type=transcript|length=2192bp|location=Sequence derived from alignment at sc0000089:125340..127531+ (Clytia hemisphaerica)
tttagtttcaaaaaGTACCAAAGAGATTAATCACAAAATACGAAAAGGAA
AATCACAATAAGTCATTGATGGTAAGCCATGgccgattatgacgtcatta
aaaaagcGGTGGTCGGCAGTGTTGCCATAATTGGAGGAACCTCTTTACTG
ACTGCTGGTTTAGCAACTGCGCCGATTACTGGTTCTGTGGGTTTAATGGC
GTTTGGGTATACATCTATTGGTGCCATTTGGGGAGGAGCTGTAGGAGGTA
AGCCTAGCAATCATCTTTACTGTATTCACGAATAAGTTCCCGGATATTCT
CGCTTTAGTTTAAGGTCAAAGTTCAACATAATTTTTGGGAATCTTTGTTA
TTGTTTCTCCTTCGTGTATGACGCTTTCTGATGTAGCTTTCTGGTACAAA
AGGAGTGAAAGAGCACAAAAAagcatcttgaattttttgtttgttatatT
GACTTGTTGGTTTGAGGCTTTCTCTCGACTACTCTTTTGCTTTGGGTGAT
TTGATTTACCCAAAGGTTTCCCAGCAAAATTCCATTATTAATcttataca
ctgaatgaaatacacccccttctcacagaaccgGTAGATaggaatttttc
agccagtggggataaaaattactGACTGAAAGTCGATGGTGATTGATATT
CTATTACGATATTTTTTGTGGCGGGGAAtttcaattcctttgttttcaag
taagaaaattcagtggggatgggaaaaatagcataatattttccAGGATT
AGTTCATTtggttattttcagtggggacaaaaatcagaagataattttcc
accgggatgATATTCTAggaaatttttccagtgggaaggggtcccagtag
gTCTGTGAGGAGACGGTGTTGAAATTAACACGATCACATTGTCAAAATCT
ACTGGTTGACTTGTGTGTGAAAAAGAGGAAGAGAATTGCCAGCAAGGGGT
TTTCACATTTATCTAAGAAAAATGTAGCTCACGTAGAaaccaaaaaacat
ttttatcgaTCGGCAGTCAAATGGTTTTGAGGGCTTCGAGGCCTGTTAAT
TCCTTCTATGTGGTCTTTAGCAAAACTTCCTGTattctttttgcctaaac
tgtTTTCAAGAGAAGATATTCAAGTTACAATACAAGTTACATCTTTAATA
ttctttttaggttttgccaTGTGGTTATTTGACGATGGCCAAGGACAGCA
AGTTGCTCAACAAGAAGACCATCAACCACACCAGCAAATTCATTTGCATC
AAACAAACATCCATTATCACCAAGTCAACCACTATCACGTCAGAGAAAGA
AGATGATTCGTTGAGAGAATATCTCTAAAAGACAATAAATTTGCACCTAT
ATGTACATACATATCCTCTTGTGTAACTTCTAGTAGGGGGGCAACCTTTA
AAATCGGTAGCATCTTTCGTGAGACGCAACTGTATGTAATTGATTCGAAA
GTAGATAGGACTTtgagacttttttgagagggggccCGCCAAATACGCCT
GGTTTAATTGTCAAAAAACTAACGTTATAGGCAAAACTCCTAATTCCAAA
ATATGAGTAAGAAgttgacatttttttaaagttgaattaaacgaaaatga
ttgatacCATCGAATAAAACATCTTTTTTTCTATACTAAAtgaatttcat
attttgtgTCCGTCACGCATGATGGCAGCAAAGCTGCGAAAGTTTGTCGA
GTATTGTCGTCATTGTTTACTAGCTAATTTTATTGTGAAGATTTCAAGTC
ATATTCTCACATTCaatttgaagcataaaaagGTATTCACAAGAAATCTT
TTGATGTACTCCGAAAACTAATtcaaattttccttcaaaataaagttaga
gagcatcaacaatACGACCTTTATCATCGTAAGGGCTTTTGGTGCAcaag
ctaaaccggcgtttgcaacgacgggaaccgtctaatctaccgggtgaccc
acgaaaaagttcggacagtTTTCGGCGTCTCGAGGCCGAAGAAATGTctc
aaagtgcttgaaattttcatatgtagaaagtagatattctaacttaaagt
ttgagctattattttttaaatttgacccacAAGTtccctacttatgagct
tttaaagtcaaaattaacTTTTCGGAATGAgcgaaattacgtcaaaaaag
aggtatcaaattgttttattatcaatcaatcaagtaAGGTCG Coding sequence (CDS) from alignment at sc0000089:125340..127531+ >TCONS_00008953 ID=TCONS_00008953|Name=TCONS_00008953|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000089:125340..127531+ (Clytia hemisphaerica)
ATGgccgattatgacgtcattaaaaaagcGGTGGTCGGCAGTGTTGCCAT
AATTGGAGGAACCTCTTTACTGACTGCTGGTTTAGCAACTGCGCCGATTA
CTGGTTCTGTGGGTTTAATGGCGTTTGGGTATACATCTATTGGTGCCATT
TGGGGAGGAGCTGTAGGAGgttttgccaTGTGGTTATTTGACGATGGCCA
AGGACAGCAAGTTGCTCAACAAGAAGACCATCAACCACACCAGCAAATTC
ATTTGCATCAAACAAACATCCATTATCACCAAGTCAACCACTATCACGTC
AGAGAAAGAAGATGAATGgccgattatgacgtcattaaaaaagcGGTGGT
CGGCAGTGTTGCCATAATTGGAGGAACCTCTTTACTGACTGCTGGTTTAG
CAACTGCGCCGATTACTGGTTCTGTGGGTTTAATGGCGTTTGGGTATACA
TCTATTGGTGCCATTTGGGGAGGAGCTGTAGGAGgttttgccaTGTGGTT
ATTTGACGATGGCCAAGGACAGCAAGTTGCTCAACAAGAAGACCATCAAC
CACACCAGCAAATTCATTTGCATCAAACAAACATCCATTATCACCAAGTC
AACCACTATCACGTCAGAGAAAGAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008953-exon-sc0000089-1491911889:125340..125586 | TCONS_00008953-exon-sc0000089-1491911889:125340..125586 | Clytia hemisphaerica | exon |
| TCONS_00008953-exon-sc0000089-1510915933:125340..125586 | TCONS_00008953-exon-sc0000089-1510915933:125340..125586 | Clytia hemisphaerica | exon |
| TCONS_00008953-exon-sc0000089-1575043694:125340..125586 | TCONS_00008953-exon-sc0000089-1575043694:125340..125586 | Clytia hemisphaerica | exon |
| TCONS_00008953-exon-sc0000089-1491911889:126500..127531 | TCONS_00008953-exon-sc0000089-1491911889:126500..127531 | Clytia hemisphaerica | exon |
| TCONS_00008953-exon-sc0000089-1510915933:126500..127531 | TCONS_00008953-exon-sc0000089-1510915933:126500..127531 | Clytia hemisphaerica | exon |
| TCONS_00008953-exon-sc0000089-1575043694:126500..127531 | TCONS_00008953-exon-sc0000089-1575043694:126500..127531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:125340..127531 + |
Blast
The following BLAST results are available for this feature:
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