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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008945 ID=TCONS_00008945|Name=TCONS_00008945|organism=Clytia hemisphaerica|type=transcript|length=1874bp
gaaggatttaagaaatggttgacccctcattggattgGAAATCATCGAGA
TAATCTTCTGGGTAAATGATtaattgatttcagtgaagtgaacAATTTAT
CACCCTTTCGATGTTGTCAtttgacgtcacaaaacatcaaatttgcaata
ttttttagttttcaacgatttaaagtgaaaatcttttgttctttgggctt
acaaatcagatctttttaCTCTCCCCATCATCCAAAGGGCTTCTaatgcg
ttcagcttatctactcctcaGTGGGTGCGATGCCGGGTGATGGCTAGTTA
AGTTCCTAAAACTCAAAAGAGGGGGGTGATTCTTGGACCGGAATTTTATA
CACATAttcatcccctatatcaaaatataACAGAGGGGACACGTGCAGAC
TAGTGAAGTGTTTAGACCTAAACTATAGATCAAACAAAGCACATTCAAAA
CTGGAACATAAGCAATTCTACTCTCTGCAGTTCTCCAATCGTTGTGTTGT
TCGCTTCAAGCCAAAATCATGAGCTTCTACCACTGCATGTAGTTTTTCTT
CGCTAAGATAGTAGATGAAACAAAACACATTTCCAATTCGAAATTTGCTT
GCGGACAACAGTATTGTTTTTTCCTATCACCTTTTAACCATTCAGTGATG
AGTGACGtgctttttatttgatttttccttCTCATTATGCTATTTGTTTC
TGTGCTGGACATTATCATCTCTTTTTTTAGTTCTATTTTTATCTGACTTT
CATAATCaagtaggtccattcagcatgtggCTTGTTTAGTATACTTTGTT
TTATCTATAAAACATTTGCCATTGTGTTTTAGCTCAAGAAACGTTGCTCA
AGCATTGAGTTACGTGTTCAGCGCCATTTTTAGTATTCGTGCAAATAAAG
CACATTTGTACTGATTGTCAGCTGAAGTGGGGGAAGGGGGTGGGttcccc
ctttttcagaaaattaggATTTCCCAGGTTGATATCAATACTAATTTGGG
GGTGGGTctccttttttagaaaattaagattttcaatgttggtattgata
ccaatttagggggtgggtcccctttttttagaaaactagGATTTTCCgta
ttggtatcaataccaatttagggggttgGGCCCCATTCTTTTTAGAGAAT
TGGGATTTTCAAGTTGATACCAAATTAGGTGTGGTGTTGTCTTCTATTCT
ACCAGCTTCTACTTTCAAACCTCGtttattcgaggatttacggtacTTTT
TATCTTGGGTCTTTATCTGAACCTTCTGCATACAATGTGGAATGTGTATT
CCCCTACTCaatttgttatgctaaaatgaGATTTTGAATGTCCTAAAATA
AAAGGATATAAAAATTACATTGTTTTACAGTTAAGAATCATTACACATTG
GTATGAGTGTTGTCATTAAAAATCTGCAGAAGAATGCTGTGCTAAACATA
TGGTTGGTTCGAAAAGACATTCATTTACTTCGAAGCATAATGGGACTTTA
CTCGTTTGATGTTGGTGTTATTTTCCTATCCAGAAGAAGGATGAAGCAAT
TAAATTATAAATATCGTAGTAAAGAGGAAAGCACAGACATTTTATCCTTC
CCTTTCCATACTGCTTTGGTAGATAATGGAGGCAATATGAACACTGAGGA
AAAAAATCTTGgtgatatttttctttgtcctgaatcaataaaatcaaaat
attcaatagATGATGATAAATTACGACAAGTGTTAGTACCCCTTATAGCA
CATGGACTTTGTCATTTGTGTGGATATGTTCATGAGACGGACGCTCAATG
GCATagaatgaatgaaaaagaaagtgaaatatTACGTCTCTTTTCTGAGA
AaacgaaaagaaattttgcaccNN Run BLAST on NCBI transcript from alignment at sc0000089:35808..37681+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008945 ID=TCONS_00008945|Name=TCONS_00008945|organism=Clytia hemisphaerica|type=transcript|length=1874bp|location=Sequence derived from alignment at sc0000089:35808..37681+ (Clytia hemisphaerica)
gaaggatttaagaaatggttgacccctcattggattgGAAATCATCGAGA
TAATCTTCTGGGTAAATGATtaattgatttcagtgaagtgaacAATTTAT
CACCCTTTCGATGTTGTCAtttgacgtcacaaaacatcaaatttgcaata
ttttttagttttcaacgatttaaagtgaaaatcttttgttctttgggctt
acaaatcagatctttttaCTCTCCCCATCATCCAAAGGGCTTCTaatgcg
ttcagcttatctactcctcaGTGGGTGCGATGCCGGGTGATGGCTAGTTA
AGTTCCTAAAACTCAAAAGAGGGGGGTGATTCTTGGACCGGAATTTTATA
CACATAttcatcccctatatcaaaatataACAGAGGGGACACGTGCAGAC
TAGTGAAGTGTTTAGACCTAAACTATAGATCAAACAAAGCACATTCAAAA
CTGGAACATAAGCAATTCTACTCTCTGCAGTTCTCCAATCGTTGTGTTGT
TCGCTTCAAGCCAAAATCATGAGCTTCTACCACTGCATGTAGTTTTTCTT
CGCTAAGATAGTAGATGAAACAAAACACATTTCCAATTCGAAATTTGCTT
GCGGACAACAGTATTGTTTTTTCCTATCACCTTTTAACCATTCAGTGATG
AGTGACGtgctttttatttgatttttccttCTCATTATGCTATTTGTTTC
TGTGCTGGACATTATCATCTCTTTTTTTAGTTCTATTTTTATCTGACTTT
CATAATCaagtaggtccattcagcatgtggCTTGTTTAGTATACTTTGTT
TTATCTATAAAACATTTGCCATTGTGTTTTAGCTCAAGAAACGTTGCTCA
AGCATTGAGTTACGTGTTCAGCGCCATTTTTAGTATTCGTGCAAATAAAG
CACATTTGTACTGATTGTCAGCTGAAGTGGGGGAAGGGGGTGGGttcccc
ctttttcagaaaattaggATTTCCCAGGTTGATATCAATACTAATTTGGG
GGTGGGTctccttttttagaaaattaagattttcaatgttggtattgata
ccaatttagggggtgggtcccctttttttagaaaactagGATTTTCCgta
ttggtatcaataccaatttagggggttgGGCCCCATTCTTTTTAGAGAAT
TGGGATTTTCAAGTTGATACCAAATTAGGTGTGGTGTTGTCTTCTATTCT
ACCAGCTTCTACTTTCAAACCTCGtttattcgaggatttacggtacTTTT
TATCTTGGGTCTTTATCTGAACCTTCTGCATACAATGTGGAATGTGTATT
CCCCTACTCaatttgttatgctaaaatgaGATTTTGAATGTCCTAAAATA
AAAGGATATAAAAATTACATTGTTTTACAGTTAAGAATCATTACACATTG
GTATGAGTGTTGTCATTAAAAATCTGCAGAAGAATGCTGTGCTAAACATA
TGGTTGGTTCGAAAAGACATTCATTTACTTCGAAGCATAATGGGACTTTA
CTCGTTTGATGTTGGTGTTATTTTCCTATCCAGAAGAAGGATGAAGCAAT
TAAATTATAAATATCGTAGTAAAGAGGAAAGCACAGACATTTTATCCTTC
CCTTTCCATACTGCTTTGGTAGATAATGGAGGCAATATGAACACTGAGGA
AAAAAATCTTGgtgatatttttctttgtcctgaatcaataaaatcaaaat
attcaatagATGATGATAAATTACGACAAGTGTTAGTACCCCTTATAGCA
CATGGACTTTGTCATTTGTGTGGATATGTTCATGAGACGGACGCTCAATG
GCATagaatgaatgaaaaagaaagtgaaatatTACGTCTCTTTTCTGAGA
AaacgaaaagaaattttgcaccNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008945-exon-sc0000089-1491911889:35808..37681 | TCONS_00008945-exon-sc0000089-1491911889:35808..37681 | Clytia hemisphaerica | exon |
| TCONS_00008945-exon-sc0000089-1510915933:35808..37681 | TCONS_00008945-exon-sc0000089-1510915933:35808..37681 | Clytia hemisphaerica | exon |
| TCONS_00008945-exon-sc0000089-1575043694:35808..37681 | TCONS_00008945-exon-sc0000089-1575043694:35808..37681 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:35808..37681 + |
Blast
BLAST of TCONS_00008945 vs. Swiss-Prot (Human)
Match: YBEY (Putative ribonuclease OS=Homo sapiens GN=YBEY PE=1 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 2.484e-25 Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 2
Query: 1403 MSVVIKNLQKNAVLNIWLVRKDIHLLRSIMGLYSFDVGVIFLSRRRMKQLNYKYRSKEESTDILSFPFHTALVDNGGNMN----TEEKNLGDIFLCPESIKSKYSIDDDKLRQVLVPLIAHGLCHLCGYVHETDAQWHRMNEKESEILRLFSEKTKRNFAP 1873
MS+VI+NLQ+ + +R I ++R I+G+ FD+G+I + + ++ +N YR + TD+LSFPFH L G ++ NLGDIFL E I + ++D VL HGLCHL G+ H T+A+W +M +KE +L +T P
Sbjct: 1 MSLVIRNLQRVIPIRRAPLRSKIEIVRRILGVQKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHL--KAGEFPQPDFPDDYNLGDIFLGVEYIFHQCKENED-YNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELGRRTGTRLQP 158
The following BLAST results are available for this feature:
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